Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: GeneMeta
https://packages.ecosyste.ms/registries/bioconductor.org/packages/GeneMeta
MetaAnalysis for High Throughput Experiments
1 version
Latest release: about 1 year ago
2 dependent packages
37,431 downloads total
Papers Mentioning GeneMeta 19
10.3389/fimmu.2019.02887
Meta-Analysis of in vitro-Differentiated Macrophages Identifies Transcriptomic Signatures That Classify Disease Macrophages in vivoCited by: 29
Author(s): Hung Jen Chen, Andrew Y. Li Yim, Guillermo R. Griffith, Wouter J. de Jonge, Marcel M.A.M. Mannens, Enrico Ferrero, Peter Henneman, Menno P.J. de Winther
Software Mentions: 13
Published: almost 5 years ago
10.1186/1751-0473-5-3
MADAM - An open source meta-analysis toolbox for R and BioconductorCited by: 20
Author(s): Karl G. Kugler, Laurin A. J. Mueller, Armin Graber
Software Mentions: 10
Published: over 14 years ago
10.1038/s41597-020-0527-2
Transcriptome data of temporal and cingulate cortex in the Rett syndrome brainCited by: 6
Author(s): Kimberly A. Aldinger, Andrew E. Timms, James W. MacDonald, Hanna K. McNamara, Jennifer Herstein, Theo K. Bammler, Oleg V. Evgrafov, James A. Knowles, Pat Levitt
Software Mentions: 5
Published: over 4 years ago
10.1186/s12885-017-3103-1
Meta-analysis of gene expression in relapsed childhood B-acute lymphoblastic leukemiaCited by: 21
Author(s): Yock-Ping Chow, Hamidah Alias, Rahman Jamal
Software Mentions: 5
Published: almost 8 years ago
10.7554/eLife.63745
Perinatal granulopoiesis and risk of pediatric asthmaCited by: 2
Author(s): Benjamin A. Turturice, Juliana Theorell, Mary Dawn Koenig, Lisa Tussing‐Humphreys, Diane R. Gold, Augusto A. Litonjua, Emily Oken, Sheryl L. Rifas–Shiman, David L. Perkins, Patricia W. Finn
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12872-020-01819-0
Integrative transcriptomic, proteomic, and machine learning approach to identifying feature genes of atrial fibrillation using atrial samples from patients with valvular heart diseaseCited by: 14
Author(s): Yaozhong Liu, Fan Bai, Zhenwei Tang, Na Liu, Qiming Liu
Software Mentions: 4
Published: almost 4 years ago
10.1186/1471-2105-11-408
Comparison study of microarray meta-analysis methodsCited by: 85
Author(s): Anna Campain, Jean Yee Hwa Yang
Software Mentions: 4
Published: over 14 years ago
10.1186/s12920-015-0133-x
Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathwaysCited by: 115
Author(s): David Adrian Ewald, Dana Malajian, James G. Krueger, Christopher T. Workman, Tianjiao Wang, Suyan Tian, Thomas Litman, Emma Guttman‐Yassky, Mayte Suárez‐Fariñas
Software Mentions: 4
Published: about 9 years ago
10.1186/s12859-018-2491-9
Classical and Bayesian random-effects meta-analysis models with sample quality weights in gene expression studiesCited by: 4
Author(s): Umaporn Siangphoe, Kellie J. Archer, Nitai D. Mukhopadhyay
Software Mentions: 4
Published: almost 6 years ago
10.1186/s13637-015-0034-5
Gene expression analysis supports tumor threshold over 2.0 cm for T-category breast cancerCited by: 2
Author(s): Hiroko Kato Solvang, Arnoldo Frigessi, Fatemeh Kaveh, Margit Riis, Torben Lüders, Ida Rashida Khan Bukholm, Vessela N. Kristensen, Bettina Kulle Andreassen
Software Mentions: 3
Published: almost 9 years ago
10.1186/s13395-015-0059-1
A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with agingCited by: 72
Author(s): Jing Su, Carl Johan Ekman, Nikolay Oskolkov, Leo Lahti, Kristoffer Ström, Alvis Brāzma, Leif Groop, Johan Rung, Ola Hansson
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0152342
Identification of Differentially Expressed Genes through Integrated Study of Alzheimer’s Disease Affected Brain RegionsCited by: 68
Author(s): Nisha Puthiyedth, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-2105-9-305
MAID : An effect size based model for microarray data integration across laboratories and platformsCited by: 13
Author(s): Ivan Borozan, Limin Chen, Bryan Paeper, Jenny Heathcote, A.M. Edwards, Michael A. Katze, Zhaolei Zhang, Ian McGilvray
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2164-14-220
Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approachCited by: 30
Author(s): Bouabid Badaoui, Christopher K. Tuggle, Zhi-Liang Hu, James M. Reecy, Tahar Aït-Ali, Anna Anselmo, Sara Botti
Software Mentions: 2
Published: almost 12 years ago
10.1186/1471-2105-15-226
Meta-analysis based on weighted ordered P-values for genomic data with heterogeneityCited by: 14
Author(s): Yihan Li, Debashis Ghosh
Software Mentions: 2
Published: over 10 years ago
10.3390/genes10110864
Meta-Analysis of Polymyositis and Dermatomyositis Microarray Data Reveals Novel Genetic BiomarkersCited by: 4
Author(s): Jaeseung Song, Daeun Kim, Juyeon Hong, Go Woon Kim, Junghyun Jung, Se Jin Park, Hee Jung Park, Jong Wha J. Joo, Wonhee Jang
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49967-4
Multi-view based integrative analysis of gene expression data for identifying biomarkersCited by: 14
Author(s): Ziyi Yang, Xiaoying Li, Jun Shu, Hui Zhang, Yanqiong Ren, Xu Zhao, Yong Liang
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0004710
Meta-Analysis and Gene Set Enrichment Relative to ER Status Reveal Elevated Activity of MYC and E2F in the “Basal” Breast Cancer SubgroupCited by: 89
Author(s): M. Chehani Alles, Margaret Gardiner-Garden, David J. Nott, Yixin Wang, John A. Foekens, Robert L. Sutherland, Elizabeth A. Musgrove, Christopher J. Ormandy
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2407-7-89
Cross-study analysis of gene expression data for intermediate neuroblastoma identifies two biological subtypesCited by: 31
Author(s): Patrick Warnat, André Oberthuer, Matthias Fischer, Frank Westermann, Roland Eils, Benedikt Brors
Software Mentions: 1
Published: over 17 years ago