Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2019.02887

https://doi.org/10.3389/fimmu.2019.02887

Cited by: 29
Author(s): Hung Jen Chen, Andrew Y. Li Yim, Guillermo R. Griffith, Wouter J. de Jonge, Marcel M.A.M. Mannens, Enrico Ferrero, Peter Henneman, Menno P.J. de Winther
Published: over 4 years ago

Software Mentions 13

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: arrayQualityMetrics

Quality metrics report for microarray data sets
Papers that mentioned: 190

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: GeneMeta

MetaAnalysis for High Throughput Experiments
Papers that mentioned: 19

bioconductor: GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: oligo

Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: Archive

Simple library that provides a common interface for extracting zip and tar archives.
Papers that mentioned: 363

pypi: oligo

UNOFFICIAL Python client for i-DE
Papers that mentioned: 204