Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: GSVA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
1 version
Latest release: about 1 year ago
15 dependent packages
318,257 downloads total

Papers Mentioning GSVA 893

10.7150/ijbs.55552
Ferroptosis-Related Long Non-Coding RNA signature predicts the prognosis of Head and neck squamous cell carcinoma
Cited by: 91
Author(s): Yun Tang, Cheng Li, Youjing Zhang, Zeng-Hong Wu
Software Mentions: 3
Published: almost 4 years ago
10.7150/ijbs.42080
Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma
Cited by: 32
Author(s): Zhencong Chen, Xiaodong Yang, Guoshu Bi, Jiaqi Liang, Zhengyang Hu, Mengnan Zhao, Ming Li, Tao Lu, Yuansheng Zheng, Qihai Sui, Yong Yang, Cheng Zhan, Wei Jiang, Qun Wang, Liang Tan
Software Mentions: 3
Published: almost 5 years ago
10.1002/advs.202101230
<i>IDH</i> Mutation Subgroup Status Associates with Intratumor Heterogeneity and the Tumor Microenvironment in Intrahepatic Cholangiocarcinoma
Cited by: 18
Author(s): Xiao Xiang, Ziyang Liu, Chong Zhang, Li Zhao, Jie Gao, Shun Zhang, Qi Cao, Jinghui Cheng, Hengkang Liu, Dingbao Chen, Cheng Qian, Ning Zhang, Ruidong Xue, Fan Bai, Jinmin Zhu
Software Mentions: 3
Published: over 3 years ago
10.1084/jem.20182163
Human <i>KIT</i>+ myeloid cells facilitate visceral metastasis by melanoma
Cited by: 4
Author(s): Chun I. Yu, Jan Martínek, Te-Chia Wu, Kyung In Kim, Joshy George, Elaheh Ahmadzadeh, Richard S. Maser, Florentina Marches, Patrick Metang, Pierre Authié, Vanessa K.P. Oliveira, Victor G. Wang, Jeffrey H. Chuang, Paul Robson, Jacques Banchereau, Karolina Palucka
Software Mentions: 3
Published: over 3 years ago
10.1186/s12967-021-02834-1
Identification of key methylation differentially expressed genes in posterior fossa ependymoma based on epigenomic and transcriptome analysis
Cited by: 6
Author(s): Guanyi Wang, Yibin Jia, Yuqing Ye, Enming Kang, Huijun Chen, Jiayou Wang, Xiaosheng He
Software Mentions: 3
Published: over 3 years ago
10.1136/jitc-2021-003093
PI3Kα inhibitor CYH33 triggers antitumor immunity in murine breast cancer by activating CD8<sup>+</sup>T cells and promoting fatty acid metabolism
Cited by: 18
Author(s): Pu Sun, Xi Zhang, Rong-Jing Wang, Qingyang Ma, Lan Xu, Yi Wang, Huiping Liao, Hailong Wang, Landian Hu, Xiangyin Kong, Jian Ding, Linghua Meng
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.102693
Immunological analyses reveal an immune subtype of uveal melanoma with a poor prognosis
Cited by: 15
Author(s): Hui Pan, Lu Liu, Junqi Cui, Yuan Yang, Zhaoyang Wang, Xianqun Fan
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.202163
Exploring diagnostic m6A regulators in endometriosis
Cited by: 32
Author(s): Li Jiang, Mengmeng Zhang, Jingni Wu, Sixue Wang, Yang Xiang, Mingyu Yi, Xinyue Zhang
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.49020
Antigen presentation and tumor immunogenicity in cancer immunotherapy response prediction
Cited by: 191
Author(s): Shixiang Wang, Zaoke He, Xuan Wang, Huimin Li, Xue Song Liu
Software Mentions: 3
Published: almost 5 years ago
10.1111/cpr.12988
Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
Cited by: 47
Author(s): Zeyu Wang, Guan-Hua Su, Ziyu Dai, Ming Meng, Hao Zhang, Fan Fan, Zhengzheng Liu, Longbo Zhang, Nathaniel Weygant, Fengjiao He, Ning Fang, Jintao Zhang, Quan Cheng
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.celrep.2019.04.076
Integrin-Mediated Macrophage Adhesion Promotes Lymphovascular Dissemination in Breast Cancer
Cited by: 38
Author(s): Rachel Evans, Fabián Flores-Borja, Sina Nassiri, Elena Miranda, Katherine Lawler, Anita Grigoriadis, James Monypenny, Cheryl Gillet, Julie Owen, Peter M. Gordon, Victoria Male, Anthony Cheung, Farzana Noor, Paul R. Barber, Rebecca Marlow, Erika Francesch-Domenech, Gilbert O. Fruhwirth, Mario Leonardo Squadrito, Borivoj Vojnovic, Andrew Tutt, Frederic Festy, Michele De Palma, Tony Ng
Software Mentions: 3
Published: over 5 years ago
10.1038/s41419-019-1835-3
The transcriptional landscape of lncRNAs reveals the oncogenic function of LINC00511 in ER-negative breast cancer
Cited by: 44
Author(s): Jian Zhang, Shiyao Sui, Hao Wu, Jinfeng Zhang, Xingda Zhang, Shouping Xu, Da Pang
Software Mentions: 3
Published: over 5 years ago
10.3390/cells9071643
The E2F Pathway Score as a Predictive Biomarker of Response to Neoadjuvant Therapy in ER+/HER2− Breast Cancer
Cited by: 75
Author(s): Masanori Oshi, Hideo Takahashi, Yoshihisa Tokumaru, Li Yan, Omar M. Rashid, Masayuki Nagahashi, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 3
Published: over 4 years ago
10.1038/s41419-021-03878-3
Resolving the graft ischemia-reperfusion injury during liver transplantation at the single cell resolution
Cited by: 19
Author(s): Linhe Wang, Jie Li, Shuai He, Liu Yang, Haitian Chen, Shujiao He, Meizhen Yin, Dawei Zou, Shirui Chen, Tao Luo, Xinyu Yu, Xiaoxia Wan, Sheng Huang, Zhiyong Guo, Xiaoshun He
Software Mentions: 3
Published: over 3 years ago
10.1002/ctm2.538
A multi‐omics study delineates new molecular features and therapeutic targets for esophageal squamous cell carcinoma
Cited by: 10
Author(s): Xing Jin, Lei Liu, Junbiao Wu, Xinqiao Jin, Guanzhen Yu, Lijun Jia, Fengying Wang, Minxin Shi, Haimin Lu, Ji‐Bin Liu, Dan Liŭ, Jing Yang, Hua Li, Yan Ni, Qin Luo, Jia Wang, Wei Wang, Wen-Lian Chen
Software Mentions: 3
Published: about 3 years ago
10.7554/eLife.40947
Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer
Cited by: 45
Author(s): Anna S Trigos, Richard B. Pearson, Anthony T. Papenfuss, David Goode
Software Mentions: 3
Published: over 5 years ago
10.1038/s41419-021-03550-w
GASC1 promotes hepatocellular carcinoma progression by inhibiting the degradation of ROCK2
Cited by: 6
Author(s): Na Shao, Jiamin Cheng, Hong Huang, Xiaoshan Gong, Yong Lu, Muhammad Idris, Peng Xu, Belinda X. Ong, Qiongyi Zhang, Feng Xu, Chungang Liu
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.103251
Construction of immune-related and prognostic lncRNA clusters and identification of their immune and genomic alterations characteristics in lung adenocarcinoma samples
Cited by: 10
Author(s): Jia Li, Chenyue Zhang, Chenxing Zhang, Haiyong Wang
Software Mentions: 3
Published: over 4 years ago
10.1038/s41419-020-2478-0
E2F1 mediated DDX11 transcriptional activation promotes hepatocellular carcinoma progression through PI3K/AKT/mTOR pathway
Cited by: 32
Author(s): Yan Yu, Dan Zhao, Kongfei Li, Yubo Cai, Penglin Xu, Rui Li, Juan Li, Xiaolong Chen, Ping Chen, Guangying Cui
Software Mentions: 3
Published: over 4 years ago
10.1038/s41419-018-1232-3
ALDH1A3 induces mesenchymal differentiation and serves as a predictor for survival in glioblastoma
Cited by: 33
Author(s): Guanzhang Li, Yiming Li, Xing Liu, Zheng Wang, Chuanbao Zhang, Fan Wu, Haiyan Jiang, Wenlong Zhang, Zhaoshi Bao, Yongzhi Wang, Jinquan Cai, Liang Zhao, Ulf D. Kahlert, Tao Jiang, Wei Zhang
Software Mentions: 3
Published: almost 6 years ago
10.15252/embj.2018101443
E2F1 proteolysis via <scp>SCF</scp> ‐cyclin F underlies synthetic lethality between cyclin F loss and Chk1 inhibition
Cited by: 37
Author(s): Kamila Burdová, Hongbin Yang, Roberta Faedda, Samuel Hume, Jagat Chauhan, Daniel Ebner, Benedikt M. Kessler, Iolanda Vendrell, David H. Drewry, Carrow Wells, Stephanie B. Hatch, Grigory L. Dianov, Francesca M. Buffa, Vincenzo D’Angiolella
Software Mentions: 3
Published: over 5 years ago
10.15252/emmm.201911217
Tumors defective in homologous recombination rely on oxidative metabolism: relevance to treatments with <scp>PARP</scp> inhibitors
Cited by: 30
Author(s): Álvaro Lahiguera, Petra Hyroššová, Agnés Figueras, Diana Garzón, Roger Moreno, Vanessa Soto‐Cerrato, Iain A. McNeish, Violeta Serra, Conxi Lázaro, Maria-Pilar Barretina-Ginesta, Joan Brunet, Javier A. Menéndez, Xavier Matías‐Guiu, August Vidal, Alberto Villanueva, Barbie Taylor‐Harding, Hisashi Tanaka, Sandra Oršulić, Alexandra Junza, Óscar Yanes, Cristina Muñoz-Pinedo, Luís Palomero, Miquel Àngel Pujana, José C. Perales, Francesc Viñals
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers13040827
Sulforaphane Inhibits the Expression of Long Noncoding RNA H19 and Its Target APOBEC3G and Thereby Pancreatic Cancer Progression
Cited by: 13
Author(s): Yiqiao Luo, Bin Yan, Li Liu, Libo Yin, Huihui Ji, Xuefeng An, Jury Gladkich, Zhimin Qi, Carolina De La Torre, Ingrid Herr
Software Mentions: 3
Published: almost 4 years ago
10.3390/cancers13112705
CALD1 Modulates Gliomas Progression via Facilitating Tumor Angiogenesis
Cited by: 11
Author(s): Quan Cheng, Anliu Tang, Zeyu Wang, Ning Fang, Zhuojing Zhang, Jintao Zhang, Chuntao Li, Yu Zeng
Software Mentions: 3
Published: over 3 years ago
10.3389/fbioe.2020.00930
Immune Cytolytic Activity as an Indicator of Immune Checkpoint Inhibitors Treatment for Prostate Cancer
Cited by: 18
Author(s): Zhe Gao, Yiran Tao, Yue‐Yun Lai, Qiong Wang, Zean Li, Shirong Peng, Junxiu Chen, Wenli Cai, Kaiwen Li, Hai Huang
Software Mentions: 3
Published: over 4 years ago
10.3389/fcell.2021.729211
The Expression and Prognostic Value of SUMO1-Activating Enzyme Subunit 1 and Its Potential Mechanism in Triple-Negative Breast Cancer
Cited by: 7
Author(s): Qingshui Wang, Wenting Zhong, Lin Deng, Qili Lin, You‐Yu Lin, Hongxia Liu, Luyun Xu, Lingfang Lu, Yajuan Chen, Jianping Huang, Meiyan Jiang, Xiao Han, Jie Zhang, He Li, Yuxiang Lin, Chuan-Gui Song, Yao Lin
Software Mentions: 3
Published: about 3 years ago
10.3390/cancers13102452
Efficacy and Safety of Durvalumab Combined with Daratumumab in Daratumumab-Refractory Multiple Myeloma Patients
Cited by: 9
Author(s): Kristine A. Frerichs, Christie P.M. Verkleij, Meletios Α. Dimopoulos, Jhon A. Marin Soto, Sonja Zweegman, Mary Young, Kathryn J. Newhall, Tuna Mutis, Niels W.C.J. van de Donk
Software Mentions: 3
Published: over 3 years ago
10.3389/fcell.2020.611222
Construction and Validation of a Cell Cycle-Related Robust Prognostic Signature in Colon Cancer
Cited by: 8
Author(s): Zhiyuan Zhang, Jingwen Chen, Shichao Zhu, Dongqing Zhu, Jiacheng Xu, Guodong He
Software Mentions: 3
Published: about 4 years ago
10.3390/cancers12020284
Mechanism- and Immune Landscape-Based Ranking of Therapeutic Responsiveness of 22 Major Human Cancers to Next Generation Anti-CTLA-4 Antibodies
Cited by: 8
Author(s): Peng Zhang, Xinxin Xiong, Christian Rolfo, Xuexiang Du, Yan Zhang, Han Yang, Alessandro Russo, Martin Devenport, Penghui Zhou, Yang Liu, Pan Zheng
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.203140
A novel ferroptosis-related gene signature for prognostic prediction of patients with lung adenocarcinoma
Cited by: 13
Author(s): Jingjing Jin, Chuan Liu, Shanshan Yu, Lingyi Cai, Andriamifahimanjaka Sitrakiniaina, Ruihong Gu, Wenfeng Li, Fangfang Wu, Xiangyang Xue
Software Mentions: 3
Published: over 3 years ago
10.1186/s12920-018-0449-4
Predict drug sensitivity of cancer cells with pathway activity inference
Cited by: 34
Author(s): Xuewei Wang, Zhifu Sun, Michael T. Zimmermann, Andrej Bugrim, Jean Pierre A. Kocher
Software Mentions: 2
Published: almost 6 years ago
10.3390/cancers12123557
Degree of Early Estrogen Response Predict Survival after Endocrine Therapy in Primary and Metastatic ER-Positive Breast Cancer
Cited by: 39
Author(s): Masanori Oshi, Yoshihisa Tokumaru, Fernando A. Angarita, Li Yan, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 2
Published: almost 4 years ago
10.1002/ctm2.561
Alternative lengthening of telomeres is mechanistically linked to potential therapeutic vulnerability in the stem‐like subtype of gastric cancer
Cited by: 6
Author(s): Ji‐Yong Sung, Jae‐Ho Cheong
Software Mentions: 2
Published: about 3 years ago
10.18632/aging.202681
Establishment and validation of an eight-gene metabolic–related prognostic signature model for lung adenocarcinoma
Cited by: 6
Author(s): Weishuang Ma, Jiaming Liang, Jinhui Liu, Dan Tian, Zisheng Chen
Software Mentions: 2
Published: over 3 years ago
10.18632/aging.102748
Protein disulfide isomerases are promising targets for predicting the survival and tumor progression in glioma patients
Cited by: 23
Author(s): Zhigang Peng, Yu Chen, Hui Cao, Hecun Zou, Xin Wan, Wenjing Zeng, Yanling Liu, Jiaqing Hu, Nan Zhang, Zhiwei Xia, Zhixiong Liu, Quan Cheng
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12920-020-00816-8
Construction and investigation of a combined hypoxia and stemness index lncRNA-associated ceRNA regulatory network in lung adenocarcinoma
Cited by: 8
Author(s): Lili Guo, Hongxia Li, Weiying Li, Jiaguang Tang
Software Mentions: 2
Published: about 4 years ago
10.1093/bioinformatics/btt292
Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data
Cited by: 5
Author(s): Luca Beltrame, Luca Bianco, Paolo Fontana, Duccio Cavalieri
Software Mentions: 2
Published: over 11 years ago
10.3390/cancers13112559
Enhanced Thermogenesis in Triple-Negative Breast Cancer Is Associated with Pro-Tumor Immune Microenvironment
Cited by: 21
Author(s): Shipra Gandhi, Masanori Oshi, Vijayashree Murthy, Elizabeth A. Repasky, Kazuaki Takabe
Software Mentions: 2
Published: over 3 years ago
10.3389/fcell.2021.654407
TERT Mutation Is Accompanied by Neutrophil Infiltration and Contributes to Poor Survival in Isocitrate Dehydrogenase Wild-Type Glioma
Cited by: 10
Author(s): Mengqi Gao, Yi Hui Lin, Xing Liu, Zheng Zhao, Zhiyuan Zhu, Hongbo Zhang, Yunchao Ban, Yanan Bie, Xiaozheng He, Xiang Sun, Shizhong Zhang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12967-019-1899-y
A robust six-gene prognostic signature for prediction of both disease-free and overall survival in non-small cell lung cancer
Cited by: 42
Author(s): Shuguang Zuo, Min Wei, Hailin Zhang, Anxian Chen, Junhua Wu, Jiwu Wei, Jie Dong
Software Mentions: 2
Published: over 5 years ago
10.1186/s40478-015-0270-7
Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups
Cited by: 26
Author(s): Benjamin H. Hinrichs, Scott Newman, Christina L. Appin, William D. Dunn, Lee Cooper, Rini Pauly, Jeanne Kowalski, Michael R. Rossi, Daniel J. Brat
Software Mentions: 2
Published: almost 9 years ago
10.1155/2021/5897907
Bioinformatic Analysis of Key Genes and Pathways Related to Keloids
Cited by: 5
Author(s): Siwei Bi, Ruiqi Liu, Beiyi Wu, Linfeng He, Jun Gu
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2020.609940
Chromatin Accessibility Regulates Gene Expression and Correlates With Tumor-Infiltrating Immune Cells in Gastric Adenocarcinoma
Cited by: 12
Author(s): Chenshen Huang, Runzhi Huang, Hong Chen, Zhizhan Ni, Qi Huang, Zongqiang Huang, Bujun Ge
Software Mentions: 2
Published: almost 4 years ago
10.18632/oncotarget.17653
Immune signature of metastatic breast cancer: Identifying predictive markers of immunotherapy response
Cited by: 21
Author(s): Jiyeon Kim, Eun-Jin Lee, Kyunghee Park, Woong-Yang Park, Hae Hyun Jung, Jin Seok Ahn, Young‐Hyuck Im, Yeon Hee Park
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-63391-z
YAP Activity is Not Associated with Survival of Uveal Melanoma Patients and Cell Lines
Cited by: 13
Author(s): Yong Joon Kim, Sung Chul Lee, Sung Eun Kim, Seo Hee Kim, Sang Kyum Kim, Christopher S. Lee
Software Mentions: 2
Published: over 4 years ago
10.1155/2021/6699131
Construction of Immune-Associated Nomogram for Predicting the Recurrence Survival Risk of Stage I Cervical Cancer
Cited by: 0
Author(s): Yajuan Wang, Lejing Zhang, Bin Wang, Yuanfang Cheng
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-71340-z
Distinct tumor immune microenvironments in primary and metastatic lesions in gastric cancer patients
Cited by: 16
Author(s): Seung-Myoung Son, Chang Gok Woo, Daehoon Kim, Hyo Yung Yun, Hong-Sik Kim, Hee Kyung Kim, Yaewon Yang, Jihyun Kwon, Minsuk Kwon, Tae Yong Kim, Hyung Don Kim, Joon Koh, Su–Hyung Park, Eui Cheol Shin, Hye Sook Han
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72791-0
OTUD4 enhances TGFβ signalling through regulation of the TGFβ receptor complex
Cited by: 5
Author(s): Patrick Jaynes, Prasanna Vasudevan Iyengar, Sarah Kit Leng Lui, Tuan Zea Tan, Natali Vasilevski, Sarah Christine Elizabeth Wright, Giuseppe Verdile, Anand D. Jeyasekharan, Pieter J.A. Eichhorn
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72480-y
A computational guided, functional validation of a novel therapeutic antibody proposes Notch signaling as a clinical relevant and druggable target in glioma
Cited by: 12
Author(s): Dayana Herrera-Rios, Guanzhang Li, Dilaware Khan, Julia Tsiampali, Ann-Christin Nickel, Philippe Aretz, Michael Hewera, Abiagail Kora Suwala, Tao Jiang, Hans‐Jakob Steiger, Marcel A. Kamp, Sajjad Muhammad, Daniel Hänggi, Jarosław Maciaczyk, Wei Zhang, Ulf D. Kahlert
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2020.581197
Characterization of ROS Metabolic Equilibrium Reclassifies Pan-Cancer Samples and Guides Pathway Targeting Therapy
Cited by: 8
Author(s): Shuai Shen, Zhiqiang Yan, Jianqing Wu, Xing Liu, Gefei Guan, Cunyi Zou, Qing Guo, Chen Zhu, Tianqi Liu, Chen Chen, Ling Chen, Cheng Peng, Wen Cheng, Anhua Wu
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2021.662010
The Expression of PD-L1 and B7-H4 in Thymic Epithelial Tumor and Its Relationship With Tumor Immune-Infiltrating Cells
Cited by: 3
Author(s): Xiaotian Yan, Jun Feng, Bo Hong, Yun Qian
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2020.575711
A Comprehensive Analysis of Alterations in DNA Damage Repair Pathways Reveals a Potential Way to Enhance the Radio-Sensitivity of Esophageal Squamous Cell Cancer
Cited by: 10
Author(s): Guangchao Wang, Shichao Guo, Weimin Zhang, Zhangfu Li, Jiancheng Xu, Dan Li, Yan Wang, Qimin Zhan
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-021-82780-6
The mitotic checkpoint is a targetable vulnerability of carboplatin-resistant triple negative breast cancers
Cited by: 15
Author(s): Stijn Moens, Peihua Zhao, Maria Francesca Baietti, Oliviero Marinelli, Delphi Van Haver, Francis Impens, Giuseppe Floris, Elisabetta Marangoni, Patrick Neven, Daniela Annibali, Anna Sablina, Frédéric Amant
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0223918
The CSF-1-receptor inhibitor, JNJ-40346527 (PRV-6527), reduced inflammatory macrophage recruitment to the intestinal mucosa and suppressed murine T cell mediated colitis
Cited by: 9
Author(s): Carl L. Manthey, Beverley A. Moore, Yanqing Chen, Matthew Loza, Xiang Yao, Hao Líu, Stanley M. Belkowski, Holly Raymond-Parks, Paul J. Dunford, Francisco León, Jennifer E. Towne, Scott E. Plevy
Software Mentions: 2
Published: about 5 years ago
10.18632/oncotarget.14414
The effect of androgen receptor expression on clinical characterization of metastatic breast cancer
Cited by: 7
Author(s): Jiyeon Kim, Kyunghee Park, Eun-Jin Lee, Hae Hyun Jung, Jin Seok Ahn, Young‐Hyuck Im, Woong-Yang Park, Yeon Hee Park
Software Mentions: 2
Published: almost 8 years ago
10.1155/2021/8872977
A Novel Glucose Metabolism-Related Gene Signature for Overall Survival Prediction in Patients with Glioblastoma
Cited by: 14
Author(s): Chaocai Zhang, Minjie Wang, Fenghu Ji, Yizhong Peng, Bo Wang, Jun Zhao, Jiandong Wu, Hongyang Zhao
Software Mentions: 2
Published: almost 4 years ago
10.1155/2020/2147397
A 5-Gene Signature Is Closely Related to Tumor Immune Microenvironment and Predicts the Prognosis of Patients with Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Jia Li, Huiyu Wang, Zhao-Yan Li, Chenyue Zhang, Chenxing Zhang, Li Cheng, Haining Yu, Haiyong Wang
Software Mentions: 2
Published: almost 5 years ago
10.3389/fonc.2020.579625
Tre2-Bub2-Cdc16 Family Proteins Based Nomogram Serve as a Promising Prognosis Predicting Model for Melanoma
Cited by: 7
Author(s): Ling Tang, Cong Peng, Susi Zhu, Zhe Zhou, Han Li, Quan Cheng, Xiaoping Chen
Software Mentions: 2
Published: about 4 years ago
10.1038/s41419-019-1943-0
DPEP1 is a direct target of miR-193a-5p and promotes hepatoblastoma progression by PI3K/Akt/mTOR pathway
Cited by: 29
Author(s): Xichun Cui, Xin Liu, Qicai Han, Jianming Zhu, Jianhao Li, Zhigang Ren, Liwen Liu, Yanbing Luo, Zhifang Wang, Dandan Zhang, Yun Fan, Da Zhang, Gang Dong
Software Mentions: 2
Published: about 5 years ago
10.3389/fonc.2021.642030
MiR-21-3p Promotes Hepatocellular Carcinoma Progression via SMAD7/YAP1 Regulation
Cited by: 21
Author(s): Yinghui Hong, Mingliang Ye, Fan Wang, Jun Fang, Chun Wang, Jie Luo, Jialiang Li, Jing Liu, Lan Liu, Qiu Zhao, Ying Chang
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2021.753330
Extracellular Matrix Characterization in Gastric Cancer Helps to Predict Prognosis and Chemotherapy Response
Cited by: 12
Author(s): Zhi Yang, Feifei Xue, Minhuan Li, Xuyou Zhu, Xiaofeng Lu, Chao Wang, En Xu, Xingzhou Wang, Liang Zhang, Heng Yu, Chuanfu Ren, Hao Wang, Yizhou Wang, Jie Chen, Wenxian Guan, Xuefeng Xia
Software Mentions: 2
Published: about 3 years ago
10.1038/s41598-021-92695-x
GREB1L overexpression correlates with prognosis and immune cell infiltration in lung adenocarcinoma
Cited by: 12
Author(s): Yilin Yu, Zhiping Wang, Qunhao Zheng, Jiancheng Li
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2019.00904
Integrin Beta 5 Is a Prognostic Biomarker and Potential Therapeutic Target in Glioblastoma
Cited by: 26
Author(s): Luyang Zhang, Qing Guo, Gefei Guan, Wen Cheng, Cheng Peng, Anhua Wu
Software Mentions: 2
Published: about 5 years ago
10.1186/s13054-021-03661-y
The predicting roles of carcinoembryonic antigen and its underlying mechanism in the progression of coronavirus disease 2019
Cited by: 7
Author(s): Runzhi Huang, Tong Meng, Qiongfang Zha, Kebin Cheng, Xin Zhou, Junhua Zheng, Dingyu Zhang, Ruilin Liu
Software Mentions: 2
Published: over 3 years ago
10.3390/cancers12123856
High Expression of NRF2 Is Associated with Increased Tumor-Infiltrating Lymphocytes and Cancer Immunity in ER-Positive/HER2-Negative Breast Cancer
Cited by: 32
Author(s): Masanori Oshi, Fernando A. Angarita, Yoshihisa Tokumaru, Li Yan, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 2
Published: almost 4 years ago
10.3389/fcell.2021.652599
Identification and Validation of an 11-Ferroptosis Related Gene Signature and Its Correlation With Immune Checkpoint Molecules in Glioma
Cited by: 16
Author(s): Zhuohui Chen, Tong Wu, Zhouyi Yan, Mengqi Zhang
Software Mentions: 2
Published: over 3 years ago
10.1038/s41419-021-03911-5
Circular RNA hsa_circ_0000277 sequesters miR-4766-5p to upregulate LAMA1 and promote esophageal carcinoma progression
Cited by: 29
Author(s): Peng Zhou, Zhengyang Wu, Wenguang Zhang, Miao Xu, Jianzhuang Ren, Qinhui Zhang, Zhanguo Sun, Xinwei Han
Software Mentions: 2
Published: over 3 years ago
10.1155/2021/6173206
m5C-Related Signatures for Predicting Prognosis in Cutaneous Melanoma with Machine Learning
Cited by: 4
Author(s): Mengling Huang, Yi Zhang, Xiaohong Ou, Caiyun Wang, Xueqing Wang, Bibo Qin, Qiong Zhang, Jun Yu, Jianxiang Zhang
Software Mentions: 2
Published: over 3 years ago
10.3389/fcvm.2021.701058
Knockdown of lnc-KCNC3-3:1 Alleviates the Development of Atherosclerosis via Downregulation of JAK1/STAT3 Signaling Pathway
Cited by: 4
Author(s): Limin Sun, Xin He, Tao Zhang, Tao Gao, Xin Wang
Software Mentions: 2
Published: about 3 years ago
10.1186/s13058-020-01286-7
Antitumor activity of Z-endoxifen in aromatase inhibitor-sensitive and aromatase inhibitor-resistant estrogen receptor-positive breast cancer
Cited by: 10
Author(s): Swaathi Jayaraman, Xiaonan Hou, Mary J. Kuffel, Vera J. Suman, Tanya L. Hoskin, Kathryn E. Reinicke, David G. Monroe, Krishna R. Kalari, Xiaojia Tang, Megan A. Zeldenrust, Jingfei Cheng, Elizabeth S. Bruinsma, Sarah A. Buhrow, Renee M. McGovern, Stephanie L. Safgren, Chad A. Walden, Jodi M. Carter, Joel M. Reid, James N. Ingle, Matthew M. Ames, John R. Hawse, Matthew P. Goetz
Software Mentions: 2
Published: over 4 years ago
10.18632/aging.202941
Immune subgroup analysis for non-small cell lung cancer may be a good choice for evaluating therapeutic efficacy and prognosis
Cited by: 1
Author(s): Yuan Tian, Jingnan Wang, Qing Wen, Guohai Su, Yehuan Sun
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-99238-4
Peripheral blood microbial signatures in current and former smokers
Cited by: 6
Author(s): Jarrett Morrow, Peter J. Castaldi, Robert Chase, Jeong H. Yun, Sool Lee, Yang‐Yu Liu, Craig P. Hersh
Software Mentions: 2
Published: about 3 years ago
10.1111/cns.13464
A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
Cited by: 2
Author(s): LI Guan-zhang, Fan Wu, Fan Zeng, You Zhai, Yuemei Feng, Yuanhao Chang, Di Wang, Tao Jiang, Wei Zhang
Software Mentions: 2
Published: about 4 years ago
10.3389/fmolb.2021.675437
Hyperbaric Oxygen Ameliorates Bleomycin-Induced Pulmonary Fibrosis in Mice
Cited by: 4
Author(s): Yuan Yuan, Yali Li, Guoqiang Qiao, Yilu Zhou, Zijian Xu, Catherine M. Hill, Zheng‐Lin Jiang, Yihua Wang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12935-020-01257-0
MicroRNA-19b-3p suppresses gastric cancer development by negatively regulating neuropilin-1
Cited by: 12
Author(s): Yu Wei, Sheng Guo, Jianhua Tang, Jian-jun Wen, Huifen Wang, Xiaobo Hu
Software Mentions: 2
Published: over 4 years ago
10.1002/cam4.2613
MiR‐26b suppresses hepatocellular carcinoma development by negatively regulating ZNRD1 and Wnt/β‐catenin signaling
Cited by: 16
Author(s): Xiaobo Hu, Ruifang Wang, Zhigang Ren, Xiaorui Liu, Junsheng Gu, Guangying Cui, Qinggang Li
Software Mentions: 2
Published: about 5 years ago
10.1155/2018/5975216
MEGF10, a Glioma Survival-Associated Molecular Signature, Predicts IDH Mutation Status
Cited by: 8
Author(s): Guanzhang Li, Zhiliang Wang, Chuanbao Zhang, Xing Liu, Fusheng Yang, Lihua Sun, Jingshan Liang, Huimin Hu, Yanwei Liu, Guoxiang You, Zhaoshi Bao, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: almost 7 years ago
10.3389/fimmu.2021.640778
Illumination of Molecular Pathways in Multiple Sclerosis Lesions and the Immune Mechanism of Matrine Treatment in EAE, a Mouse Model of MS
Cited by: 10
Author(s): Mengmeng Dou, Xueliang Zhou, Lifeng Li, Mingliang Zhang, Wenbin Wang, Mengru Wang, Yilei Jing, Rui Ma, Jie Zhao, Lin Zhu
Software Mentions: 2
Published: over 3 years ago
10.1155/2021/4731349
Analyzing mRNAsi-Related Genes Identifies Novel Prognostic Markers and Potential Drug Combination for Patients with Basal Breast Cancer
Cited by: 5
Author(s): Kai Huang, Yu Wu, Ying Xie, Liying Huang, Hong Liu
Software Mentions: 2
Published: about 3 years ago
10.3389/fimmu.2021.693314
A Signature-Based Classification of Gastric Cancer That Stratifies Tumor Immunity and Predicts Responses to PD-1 Inhibitors
Cited by: 9
Author(s): Song Li, Jing Gao, Qian Xu, Xue Zhang, Miao Hao, Xin Dai, Kai Huang, Lian Liu
Software Mentions: 2
Published: over 3 years ago
10.1002/cam4.3466
Correlation of tumor‐infiltrating immune cells of melanoma with overall survival by immunogenomic analysis
Cited by: 18
Author(s): Lili Huang, Hong Chen, Yu Xu, Jianhua Chen, Zhuqing Liu, Qing Xu
Software Mentions: 2
Published: about 4 years ago
10.1111/1759-7714.14089
Lung adenocarcinoma patients with <scp>KEAP1</scp> mutation harboring low immune cell infiltration and low activity of immune environment
Cited by: 9
Author(s): Wei Cheng, Bin Xu, Haitao Zhang, Shencun Fang
Software Mentions: 2
Published: over 3 years ago
10.3390/toxins13020146
ERK and mTORC1 Inhibitors Enhance the Anti-Cancer Capacity of the Octpep-1 Venom-Derived Peptide in Melanoma BRAF(V600E) Mutations
Cited by: 7
Author(s): Javier Moral-Sanz, Manuel A. Fernández‐Rojo, Jeremy Potriquet, Pamela Mukhopadhyay, Andreas Brust, Patrick Wilhelm, Taylor B. Smallwood, Richard J. Clark, Bryan G. Fry, Paul F. Alewood, Nicola Waddell, John J. Miles, Jason Mulvenna, Maria P. Ikonomopoulou
Software Mentions: 2
Published: almost 4 years ago
10.18632/aging.203008
Aging-related genes are potential prognostic biomarkers for patients with gliomas
Cited by: 10
Author(s): Gelei Xiao, Xiangyang Zhang, Xun Zhang, Yuanbing Chen, Zhiwei Xia, Hui Cao, Jun Huang, Quan Cheng
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms21186708
Intra-Tumoral Angiogenesis Is Associated with Inflammation, Immune Reaction and Metastatic Recurrence in Breast Cancer
Cited by: 59
Author(s): Masanori Oshi, Stephanie Newman, Yoshihisa Tokumaru, Li Yan, Ryusei Matsuyama, Itaru Endo, Masayuki Nagahashi, Kazuaki Takabe
Software Mentions: 2
Published: about 4 years ago
10.1101/2021.01.12.426381
Male sex and age biases viral burden, viral shedding, and type 1 and 2 interferon responses during SARS-CoV-2 infection in ferrets
Cited by: 3
Author(s): Magen E. Francis, Brian Richardson, Mara McNeil, Melissa Rioux, Mary K. Foley, Anni Ge, Roger D. Pechous, Jason Kindrachuk, Cheryl M. Cameron, Christopher T. Richardson, J. Lew, Mark J. Cameron, Volker Gerdts, Darryl Falzarano, Alyson A. Kelvin
Software Mentions: 2
Published: almost 4 years ago
10.3389/fimmu.2018.00232
Unique Immune Gene Expression Patterns in Bronchoalveolar Lavage and Tumor Adjacent Non-Neoplastic Lung Tissue in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Chih Hsi Kuo, Chien Ying Liu, Stelios Pavlidis, Yu Lun Lo, Yen Wen Wang, Chih‐Hung Chen, How Wen Ko, Fu‐Tsai Chung, Tin Yu Lin, Tsai Yu Wang, Kang Yun Lee, Yi Guo, Tzu Hao Wang, Cheng‐Ta Yang
Software Mentions: 2
Published: almost 7 years ago
10.3389/fimmu.2021.693062
Clinical Significance and Immunologic Landscape of a Five-IL(R)-Based Signature in Lung Adenocarcinoma
Cited by: 13
Author(s): Tao Fan, Shize Pan, Shuo Yang, Bo Hao, Lin Zhang, Donghang Li, Qing Geng
Software Mentions: 2
Published: about 3 years ago
10.3390/ijms21082921
G2M Cell Cycle Pathway Score as a Prognostic Biomarker of Metastasis in Estrogen Receptor (ER)-Positive Breast Cancer
Cited by: 100
Author(s): Masanori Oshi, Hideo Takahashi, Yoshihisa Tokumaru, Li Yan, Omar M. Rashid, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 2
Published: over 4 years ago
10.1038/s41418-021-00745-8
Evidence that polyploidy in esophageal adenocarcinoma originates from mitotic slippage caused by defective chromosome attachments
Cited by: 7
Author(s): Stacey J. Scott, Xiaodun Li, Sriganesh Jammula, Ginny Devonshire, Catherine Lindon, Rebecca C. Fitzgerald, Pier Paolo D’Avino
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.704965
Interferon-Induced Transmembrane Protein 3 Shapes an Inflamed Tumor Microenvironment and Identifies Immuno-Hot Tumors
Cited by: 27
Author(s): Yun Cai, Wenfei Ji, Changhua Sun, Rui Xu, Xuechun Chen, Yifan Deng, Jiadong Pan, Jiayue Yang, Hongjun Zhu, Jie Mei
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.628966
PDIA5 is Correlated With Immune Infiltration and Predicts Poor Prognosis in Gliomas
Cited by: 34
Author(s): Hao Zhang, Jialin He, Ziyu Dai, Zeyu Wang, Xisong Liang, Fengjiao He, Zhiwei Xia, Shi Feng, Hui Cao, Jintao Zhang, Quan Cheng
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12967-019-1914-3
ARL3 is downregulated and acts as a prognostic biomarker in glioma
Cited by: 19
Author(s): Yulin Wang, Wenjin Zhao, Xin Liu, Gefei Guan, Minghua Zhuang
Software Mentions: 2
Published: over 5 years ago
10.1186/s13046-016-0463-3
GANT61, a GLI inhibitor, sensitizes glioma cells to the temozolomide treatment
Cited by: 49
Author(s): Jianlong Li, Jinquan Cai, Shijun Zhao, Kun Yao, Ying Sun, Yongli Li, Lingchao Chen, Ruiyan Li, Xiuwei Zhai, Junhe Zhang
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13046-019-1370-1
miR-504 suppresses mesenchymal phenotype of glioblastoma by directly targeting the FZD7-mediated Wnt–β-catenin pathway
Cited by: 47
Author(s): Qiang Liu, Yanlei Guan, Zhenhang Li, Yao Wang, Yu Liu, Run Cui, Yunjie Wang
Software Mentions: 2
Published: over 5 years ago
10.1186/s12967-021-03062-3
Increased sensitivity to SMAC mimetic LCL161 identified by longitudinal ex vivo pharmacogenomics of recurrent, KRAS mutated rectal cancer liver metastases
Cited by: 5
Author(s): Kushtrim Kryeziu, Seyed H. Moosavi, Christian H. Bergsland, Marianne G. Guren, Peter W. Eide, Max Z. Totland, Kristoffer Lassen, Andreas Abildgaard, Arild Nesbakken, Anita Sveen, Ragnhild A. Lothe
Software Mentions: 2
Published: about 3 years ago
10.3389/fimmu.2019.01610
Transcriptional Effects of Ozone and Impact on Airway Inflammation
Cited by: 43
Author(s): Sharon Mumby, Kian Fan Chung, Ian M. Adcock
Software Mentions: 2
Published: over 5 years ago
10.18632/aging.203045
Accumulation of CD45RO+CD8+ T cells is a diagnostic and prognostic biomarker for clear cell renal cell carcinoma
Cited by: 5
Author(s): Ke Wu, Xinyi Zheng, Zhixian Yao, Zhong Zheng, Wenjie Huang, Xingyu Mu, Feng Sun, Zhihong Liu, Junhua Zheng
Software Mentions: 2
Published: over 3 years ago
10.1186/s13046-021-02108-0
Tumor cell-derived SPON2 promotes M2-polarized tumor-associated macrophage infiltration and cancer progression by activating PYK2 in CRC
Cited by: 33
Author(s): Chengmei Huang, Ruizhang Ou, Xiaoning Chen, Yaxin Zhang, Jiexi Li, Yi-Hao Liang, Xiaohui Zhu, Lei Liu, Mingzhou Li, Daowei Lin, Jun-Feng Qiu, Guanglong Liu, Lingjie Zhang, Yuanyuan Wu, Huiyi Tang, Yanmin Liu, Liang Li, Yan‐Qing Ding, Wenting Liao
Software Mentions: 2
Published: about 3 years ago
10.3390/cancers12082227
Pre-Existing Tumoral B Cell Infiltration and Impaired Genome Maintenance Correlate with Response to Chemoradiotherapy in Locally Advanced Rectal Cancer
Cited by: 11
Author(s): Juan M. Sendoya, Soledad Iseas, Mariana Coraglio, Mariano Golubicki, Juan Robbio, Rubén Salanova, Mirta Kujaruk, Vanesa Mikolaitis, Mariana Rizzolo, Gonzalo Ruiz, Ana Cabanne, Ubaldo Gualdrini, Guillermo Méndez, Stella Hirmas, Cecilia Rotondaro, Julieta Viglino, Martín Eleta, Elmer Fernández, Martı́n C. Abba, Osvaldo L. Podhajcer, Enrique Roca, Andrea S. Llera
Software Mentions: 2
Published: over 4 years ago