bioconductor: GSVA | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.670059

A MicroRNA-Based Network Provides Potential Predictive Signatures and Reveals the Crucial Role of PI3K/AKT Signaling for Hepatic Lineage Maturation
Cited by: 3
Author(s): Xicheng Wang, Wencheng Zhang, Yong Yang, Jiansong Wang, Hua Qiu, Lijun Liao, Tsunekazu Oikawa, Eliane Wauthier, Praveen Sethupathy, Lola M. Reíd, Zhongmin Liu, Zhiying He
Software Mentions: 3
Published: over 3 years ago

10.3389/fcell.2020.00538

Ferroptosis-Related Gene Signature Predicts Glioma Cell Death and Glioma Patient Progression
Cited by: 95
Author(s): Han-jie Liu, Huimin Hu, LI Guan-zhang, Ying Zhang, Fan Wu, Xiu Liu, Kuan‐Yu Wang, Chuanbao Zhang, Tao Jiang
Software Mentions: 3
Published: over 4 years ago

10.3389/fcell.2021.655950

Prognostic Signature for Lung Adenocarcinoma Patients Based on Cell-Cycle-Related Genes
Cited by: 12
Author(s): Weijia Jiang, Jiameng Xu, Zirui Liao, Guangbin Li, Chengpeng Zhang, Yang Feng
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0132454

Histological Stratification of Thick and Thin Plaque Psoriasis Explores Molecular Phenotypes with Clinical Implications
Cited by: 21
Author(s): Jaehwan Kim, Pranay Nadella, Dong-Joo Kim, Carrie Brodmerkel, Joel Correa da Rosa, James G. Krueger, Mayte Suárez‐Fariñas
Software Mentions: 3
Published: over 9 years ago

10.3389/fendo.2020.571151

Microarray Data of Lacrimal Gland Implicates Dysregulated Protein Processing in Endoplasmic Reticulum in Graves’ Ophthalmopathy
Cited by: 1
Author(s): Wenling Tu, Jia Yao, Zhanjun Mei, Xue Jiang, Yu-Hong Shi
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2021.729046

Construction and Validation of a Ferroptosis-Related Prognostic Model for Endometrial Cancer
Cited by: 10
Author(s): Hao Wang, Yingchen Wu, Shengfu Chen, Minzhi Hou, Yanning Yang, Mingquan Xie
Software Mentions: 3
Published: about 3 years ago

10.3389/fgene.2020.00306

RNA N6-Methyladenosine-Related Gene Contribute to Clinical Prognostic Impact on Patients With Liver Cancer
Cited by: 9
Author(s): Wei Wang, Bo Sun, Xia Yang, Shenghong Sun, Chuanchao He
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2020.634195

A Novel Framework to Predict Breast Cancer Prognosis Using Immune-Associated LncRNAs
Cited by: 8
Author(s): Zhijian Huang, Xiao Chen, Fushou Zhang, Zhifeng Zhou, Liang Yu, Changsheng Ye, Weiwei Huang, Nani Li
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22136806

Proteomics Analysis of Andrographolide-Induced Apoptosis via the Regulation of Tumor Suppressor p53 Proteolysis in Cervical Cancer-Derived Human Papillomavirus 16-Positive Cell Lines
Cited by: 5
Author(s): Pariyakorn Udomwan, Chamsai Pientong, Panwad Tongchai, Ati Burassakarn, Nuchsupha Sunthamala, Sittiruk Roytrakul, Supawadee Suebsasana, Tipaya Ekalaksananan
Software Mentions: 3
Published: over 3 years ago

10.1111/pbi.13139

Identification and characterization of a novel stay‐green <scp>QTL</scp> that increases yield in maize
Cited by: 43
Author(s): Jun Zhang, Kevin Fengler, John L. Van Hemert, Rajeev Gupta, Nick Mongar, Juan Sun, William B. Allen, Yang Wang, Benjamin P. Weers, Hua Mo, R. Lafitte, Zhenglin Hou, Angela Bryant, Farag Ibraheem, Jennifer Arp, Kankshita Swaminathan, Stephen P. Moose, Bailin Li, Bo Shen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.666833

MiR-3614-5p Is a Potential Novel Biomarker for Colorectal Cancer
Cited by: 9
Author(s): Han Lin, Yanjun Sun, Cansheng Lu, Chungeng Ma, Jian Shi, Dengqun Sun
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.202351

Four hub genes regulate tumor infiltration by immune cells, antitumor immunity in the tumor microenvironment, and survival outcomes in lung squamous cell carcinoma patients
Cited by: 6
Author(s): Tuo Zhang, Haitang Yang, Beibei Sun, Feng Yao
Software Mentions: 3
Published: almost 4 years ago

10.18632/aging.102914

A nine-gene signature related to tumor microenvironment predicts overall survival with ovarian cancer
Cited by: 24
Author(s): Qi Ding, Shanshan Dong, Ranran Wang, Keqiang Zhang, Hui Wang, Xiao Yan Zhou, Jing Wang, Kee H. Wong, Ying Long, Sipin Zhu, Weigang Wang, Huayi Ren, Yong Zeng
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2021.646436

Gene Expression Signature of Traumatic Brain Injury
Cited by: 6
Author(s): Yuhang Ma, Yunhui Liu, Xuelei Ruan, Xiaobai Liu, Jian Zheng, Hao Wei Teng, Lianqi Shao, Chunqing Yang, Di Wang, Yixue Xue
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.159

BD-Func: a streamlined algorithm for predicting activation and inhibition of pathways
Cited by: 11
Author(s): Charles Warden, Noriko Kanaya, Shiuan Chen, Yuan Yun
Software Mentions: 3
Published: about 11 years ago

10.3389/fgene.2020.570530

Identification of Signatures of Prognosis Prediction for Melanoma Using a Hypoxia Score
Cited by: 19
Author(s): Yanhong Shou, Lu Yang, Yue Yang, Xiao‐Dong Zhu, Feng Li, Jianhua Xu
Software Mentions: 3
Published: about 4 years ago

10.7717/peerj.11697

High expression of PIMREG predicts poor survival outcomes and is correlated with immune infiltrates in lung adenocarcinoma
Cited by: 3
Author(s): Feng Jiang, Min Liang, Xiaolu Huang, Wenjing Shi, Yumin Wang
Software Mentions: 3
Published: over 3 years ago

10.20411/pai.v5i1.348

Pharmacological Inhibition of PPARy Boosts HIV Reactivation and Th17 Effector Functions, while Preventing Progeny Virion Release and de novo Infection
Cited by: 9
Author(s): Delphine Planas, Augustine Fert, Yuwei Zhang, Jean-Philippe Goulet, Jonathan Richard, Pradeep D. Uchil, María Julia Ruiz, Laurence Raymond Marchand, Debashree Chatterjee, Huicheng Chen, Tomas Raul Wiche Salinas, Annie Gosselin, Éric A. Cohen, Jean Pierre Routy, Nicolas Chomont, Petronela Ancuța
Software Mentions: 3
Published: about 4 years ago

10.3389/fgene.2021.698570

Comprehensive Bioinformatics Analysis Identifies POLR2I as a Key Gene in the Pathogenesis of Hypertensive Nephropathy
Cited by: 4
Author(s): Shilong You, Jiaqi Xu, Boquan Wu, Shaojun Wu, Ying Zhang, Yingxian Sun, Naijin Zhang
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2021.620472

Case Report: Novel RPGRIP1L Gene Mutations Identified by Whole Exome Sequencing in a Patient With Multiple Primary Tumors
Cited by: 0
Author(s): Jianghong Guo, Yu Ye, Zhuqing Ji, Ming Yao, Xiaotian Xia, Xiaofeng Sha, Ming‐De Huang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12957-021-02354-8

N6-methyladenosine (m6A) RNA methylation regulator SNRPC is a prognostic biomarker and is correlated with immunotherapy in hepatocellular carcinoma
Cited by: 9
Author(s): Jihao Cai, Minglei Zhou, Jian‐Xin Xu
Software Mentions: 3
Published: over 3 years ago

10.1002/advs.202001018

KEAP1 Mutations Drive Tumorigenesis by Suppressing SOX9 Ubiquitination and Degradation
Cited by: 7
Author(s): Na Shao, Hong Huang, Muhammad Idris, Peng Xu, Feng Xu, Shiwu Dong, Chungang Liu
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2021.666370

lncRNA-HEIM Facilitated Liver Fibrosis by Up-Regulating TGF-β Expression in Long-Term Outcome of Chronic Hepatitis B
Cited by: 9
Author(s): Jian Yao, Changpo Lin, Jingjing Jiang, Xujun Zhang, Fengxia Li, Tianxing Liu, Hongyan Diao
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2021.611058

Hypoxic Characteristic in the Immunosuppressive Microenvironment of Hepatocellular Carcinoma
Cited by: 19
Author(s): Zhuomao Mo, Daiyuan Liu, Dade Rong, Shijun Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1002/1878-0261.12643

Prognostic significance of PD‐L1 expression on cell‐surface vimentin‐positive circulating tumor cells in gastric cancer patients
Cited by: 31
Author(s): Mengyuan Liu, Ruo–Yu Wang, Xiaodi Sun, Yuting Liu, Zhi Wang, Yan Jin, Xiangyu Kong, Shangdong Liang, Qiuge Liu, Tong Zhao, Xuening Ji, Gang Wang, Fuguang Wang, Guan Wang, Liang Chen, Qingfu Zhang, Weipeng Lv, Heming Li, Mingjun Sun
Software Mentions: 3
Published: over 4 years ago

10.1186/s10020-019-0116-z

Inhibition of phosphatidylinositol 3-kinase by PX-866 suppresses temozolomide-induced autophagy and promotes apoptosis in glioblastoma cells
Cited by: 24
Author(s): Bryan Harder, Sen Peng, Chris Sereduk, Andrej M. Sodoma, Gaspar J. Kitange, Joseph C. Loftus, Jann N. Sarkaria, Nhan L. Tran
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2019.02368

Tumor-Infiltrating Immune Cells Act as a Marker for Prognosis in Colorectal Cancer
Cited by: 175
Author(s): Lele Ye, Teming Zhang, Zhengchun Kang, Gangqiang Guo, Yin‐Xia Sun, Kangming Lin, Qunjia Huang, Xinyu Shi, Zhonglin Ni, Ning Ding, Kong‐Nan Zhao, Wenjun Chang, Junjie Wang, Feng Lin, Xiangyang Xue
Software Mentions: 3
Published: about 5 years ago

10.1186/s12943-021-01322-w

Cross-talk of four types of RNA modification writers defines tumor microenvironment and pharmacogenomic landscape in colorectal cancer
Cited by: 118
Author(s): Huifang Chen, Jiameng Yao, Rujuan Bao, Yu Dong, Ting Zhang, Yanhua Du, Gaoyang Wang, Duan Ni, Zhenzhen Xun, Xiaoyin Niu, Youqiong Ye, Hua Bing Li
Software Mentions: 3
Published: almost 4 years ago

10.3390/life11080813

Novel Therapies for Tongue Squamous Cell Carcinoma Patients with High-Grade Tumors
Cited by: 7
Author(s): Hao Lin, Lu Chen, Weizhong Li, Zihao Chen
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2021.659659

SAMD9 Is Relating With M2 Macrophage and Remarkable Malignancy Characters in Low-Grade Glioma
Cited by: 16
Author(s): Wenping Ma, Kenan Zhang, Zhaoshi Bao, Tao Jiang, Ying Zhang
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2021.657951

Multidimensional Analyses of Tumor Immune Microenvironment Reveal the Possible Rationality of Immunotherapy and Identify High Immunotherapy Response Subtypes for Renal Papillary Cell Carcinoma
Cited by: 1
Author(s): Bojun Wei, Meng Yu, Jihang Yao, Mengshi Jiang, Jing An, Jieping Yang, Jiaxing Lin, Yunan Zhao, Yuyan Zhu
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2021.653711

The N6-Methyladenosine-Modified Pseudogene HSPA7 Correlates With the Tumor Microenvironment and Predicts the Response to Immune Checkpoint Therapy in Glioblastoma
Cited by: 26
Author(s): Rongrong Zhao, Boyan Li, Shouji Zhang, Zheng He, Ziwen Pan, Qindong Guo, Wei Qiu, Yanhua Qi, Shulin Zhao, Shaobo Wang, Zihang Chen, Ping Zhang, Xing Guo, Hao Xue, Gang Li
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/9915312

Ferroptosis-Related Gene Signature Promotes Ovarian Cancer by Influencing Immune Infiltration and Invasion
Cited by: 21
Author(s): You Qing Yang, Fan Qi, Jian Huang, Yaoqiu Wu, Haiyan Lin, Qingxue Zhang
Software Mentions: 3
Published: over 3 years ago

10.3389/fmolb.2020.602068

Identification of HOXA1 as a Novel Biomarker in Prognosis of Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Hui Li, Xiaomin Wang, Mingjie Zhang, Mengjun Wang, Junjie Zhang, Sai Ma
Software Mentions: 3
Published: over 3 years ago

10.1155/2019/5952836

TP53Mutations Promote Immunogenic Activity in Breast Cancer
Cited by: 45
Author(s): Zhixian Liu, Zhongshan Jiang, Yingsheng Gao, Lirui Wang, Chen Cai, Qianqian Wang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12935-020-01604-1

Identification of NEO1 as a prognostic biomarker and its effects on the progression of colorectal cancer
Cited by: 1
Author(s): Meng Zhang, Zhou Zhou, Xuekai Pan, Yunjiao Zhou, Haiou Li, Peishan Qiu, Mengna Zhang, Ruyi Peng, Haizhou Wang, Lan Liu, Jing Liu, Qiu Zhao
Software Mentions: 3
Published: about 4 years ago

10.1111/cns.13254

High expression of COPB2 predicts adverse outcomes: A potential therapeutic target for glioma
Cited by: 13
Author(s): Yan Zhou, Xuan Wang, Xing Huang, Xu‐Dong Li, Kai Chen, Hao Yu, Yujie Zhou, Ping Lv, Xiao Jiang
Software Mentions: 3
Published: about 5 years ago

10.1111/cns.13380

Molecular and clinical characterization of PARP9 in gliomas: A potential immunotherapeutic target
Cited by: 13
Author(s): Hao Xu, Songshan Chai, Yihao Wang, Jiajing Wang, Dongdong Xiao, Junjun Li, Nanxiang Xiong
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.202165

Autophagy-mediated regulation patterns contribute to the alterations of the immune microenvironment in periodontitis
Cited by: 6
Author(s): Xiaoqi Zhang, Yu Jin, Qingxuan Wang, Jian Fan, Minqi Li, Hu Long, Wenli Lai
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41416-020-01178-9

EMTome: a resource for pan-cancer analysis of epithelial-mesenchymal transition genes and signatures
Cited by: 94
Author(s): Suhas Vasaikar, Abhijeet Deshmukh, Petra den Hollander, Sridevi Addanki, Nick A. Kuburich, Sriya Kudaravalli, Robiya Joseph, Jeffrey T. Chang, Rama Soundararajan, Sendurai A. Mani
Software Mentions: 3
Published: almost 4 years ago

10.1155/2021/5512325

Classification of Lung Adenocarcinoma Based on Immune Checkpoint and Screening of Related Genes
Cited by: 6
Author(s): Ting Zhou, Ping Yang, Sanyuan Tang, Zhongshan Zhu, Xiaobing Li, Yang Zhou, Ruoxi Wu, Xuefei Tian, Liang Li
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.01269

The Better Survival of MSI Subtype Is Associated With the Oxidative Stress Related Pathways in Gastric Cancer
Cited by: 23
Author(s): Lei Cai, Yanjun Sun, Kezhou Wang, Wei Guan, Juanqing Yue, Junlei Li, Ruifen Wang, Lifeng Wang
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2019.01470

Biological Determinants of Chemo-Radiotherapy Response in HPV-Negative Head and Neck Cancer: A Multicentric External Validation
Cited by: 16
Author(s): Martijn van der Heijden, Paul Essers, Monique C. de Jong, Reinout H. de Roest, Sebastian Sanduleanu, Caroline V.M. Verhagen, Olga Hamming‐Vrieze, Frank Hoebers, Philippe Lambin, Harry Bartelink, C. René Leemans, Marcel Verheij, Ruud H. Brakenhoff, Michiel W. M. van den Brekel, Conchita Vens
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20202870

Identification of a thirteen-gene signature predicting overall survival for hepatocellular carcinoma
Cited by: 3
Author(s): Xiaohan Zhou, Chengdong Liu, Hanyi Zeng, De‐Hua Wu, Li Liu
Software Mentions: 3
Published: over 3 years ago

10.1042/BSR20193308

Genomic analysis and clinical implications of immune cell infiltration in gastric cancer
Cited by: 11
Author(s): Ming Wu, Yadong Wang, Huan Liu, Jukun Song, Jie Ding
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.706883

High Expression of SLC16A1 as a Biomarker to Predict Poor Prognosis of Urological Cancers
Cited by: 5
Author(s): Ling Zhang, Zhengshuai Song, Zhishun Wang, Yonglian Guo, Changgeng Xu, Hao Shen
Software Mentions: 3
Published: about 3 years ago

10.1042/BSR20194200

Genome-wide analysis of the hypoxia-related DNA methylation-driven genes in lung adenocarcinoma progression
Cited by: 19
Author(s): Hongxia Li, Tong Li, Tao Hong, Zhe Liu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2020.602555

Development of an Immune-Related Gene Signature for Prognosis in Melanoma
Cited by: 13
Author(s): Mengli Zhang, Xu Zhou, Dan Huang, Chao Luan, Heng Gu, Ju Mei, Kun Chen
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.595182

A Combined Epithelial Mesenchymal Transformation and DNA Repair Gene Panel in Colorectal Cancer With Prognostic and Therapeutic Implication
Cited by: 2
Author(s): Xiaoliang Huang, Jungang Liu, Haizhou Liu, Xianwei Mo, Yongsheng Meng, Lihua Zhang, Yuqing Deng, Yawei Zhang, Weizhong Tang
Software Mentions: 3
Published: almost 4 years ago

10.1155/2021/5557649

Tumor Immune Microenvironment Characterization of Primary Lung Adenocarcinoma and Lymph Node Metastases
Cited by: 2
Author(s): Yuan Zhou, Xiaojian Shi, Huan Chen, Beibei Mao, Song Xue, Lingling Gao, Jiao Zhang, Ying Yang, Henghui Zhang, Wei Guo, Wei Zhuang
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.642159

RNA Modification of N6-Methyladenosine Predicts Immune Phenotypes and Therapeutic Opportunities in Kidney Renal Clear Cell Carcinoma
Cited by: 29
Author(s): Huihuang Li, Jiao Hu, Anze Yu, Belaydi Othmane, Tao Guo, Jinhui Liu, Chunliang Cheng, Jinbo Chen, Xiongbing Zu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.666313

The Role of Long Noncoding RNA AL161431.1 in the Development and Progression of Pancreatic Cancer
Cited by: 10
Author(s): Gang Ma, Guichen Li, Wufeng Fan, Yuanhong Xu, Shuai Song, Guo Ke, Zhe Liu
Software Mentions: 3
Published: over 3 years ago

10.18632/oncotarget.13181

OTX015 (MK-8628), a novel BET inhibitor, exhibits antitumor activity in non-small cell and small cell lung cancer models harboring different oncogenic mutations
Cited by: 38
Author(s): María E. Riveiro, Lucile Astorgues‐Xerri, Ramiro Vàzquez, Roberta Frapolli, Ivo Kwee, Andrea Rinaldi, Elodie Odore, Keyvan Rezai, Mohamed Békradda, Giorgio Inghirami, Maurizio D’Incalci, Kay Noel, Esteban Cvitkovic, Éric Raymond, Francesco Bertoni
Software Mentions: 3
Published: about 8 years ago

10.18632/oncotarget.15881

Clinical implications of genomic profiles in metastatic breast cancer with a focus on TP53 and PIK3CA, the most frequently mutated genes
Cited by: 22
Author(s): Jiyeon Kim, Eun-Jin Lee, Kyunghee Park, Woong-Yang Park, Hae Hyun Jung, Jin Seok Ahn, Young‐Hyuck Im, Yeon Hee Park
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2021.639724

Loss of IL-34 Expression Indicates Poor Prognosis in Patients With Lung Adenocarcinoma
Cited by: 7
Author(s): Zhendong Wang, Zhu Jun, Tianyi Wang, Hao Zhou, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Jiahai Shi
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.628677

Risk Signature of Cancer-Associated Fibroblast–Secreted Cytokines Associates With Clinical Outcomes of Breast Cancer
Cited by: 7
Author(s): Chunxiao Sun, Siwei Wang, Yuchen Zhang, Fan Yang, Tianyu Zeng, Fanchen Meng, Mingli Yang, Yiqi Yang, Yijia Hua, Ziyi Fu, Jun Li, Xiang Huang, Hao Wu, Yuan Yin, Wei Li
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00931

Novel Potential Biomarkers Associated With Epithelial to Mesenchymal Transition and Bladder Cancer Prognosis Identified by Integrated Bioinformatic Analysis
Cited by: 10
Author(s): Chengyuan Wang, Yujing Yang, Lei Yin, Ningde Wei, Tao Hong, Zuyu Sun, Jiaxi Yao, Zhi Li, Tao Liu
Software Mentions: 3
Published: over 4 years ago

10.18632/oncotarget.23517

Treatment-associated TP53 DNA-binding domain missense mutations in the pathogenesis of secondary gliosarcoma
Cited by: 20
Author(s): Margaret Pain, Huaien Wang, Eunjee Lee, Maya Strahl, Wissam Hamou, Robert Sebra, Jun Zhu, Raymund L. Yong
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2021.685823

A Novel Classification of Glioma Subgroup, Which Is Highly Correlated With the Clinical Characteristics and Tumor Tissue Characteristics, Based on the Expression Levels of Gβ and Gγ Genes
Cited by: 4
Author(s): Zehao Cai, Chunna Yu, Shenglan Li, Can Wang, Yaqiong Fan, Qiang Ji, Feng Chen, Wenbin Li
Software Mentions: 3
Published: over 3 years ago

10.1186/s12920-020-00868-w

Prognostic value of eight immune gene signatures in pancreatic cancer patients
Cited by: 1
Author(s): Wenting Wang, Zhijian Xu, Ning Wang, Ruyong Yao, Tao Qin, Hao Lin, Lu Yue
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.715541

Long Noncoding RNA AC007639.1 Promotes the Pathogenesis and Progression of Hepatocellular Carcinoma Through Inhibiting Apoptosis and Stimulating Chemotherapeutic Resistance
Cited by: 1
Author(s): Yun Bai, Meijuan Ding, Dan Lü, Yiwen Li, Shuai Yao, Lei Wang, Hui Li, Guanghua Cui, Xue Li, Xiaoke Sun, Yang Yu
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2021.608842

High Expression of Hyaluronan-Mediated Motility Receptor Predicts Adverse Outcomes: A Potential Therapeutic Target for Head and Neck Squamous Cell Carcinoma
Cited by: 12
Author(s): Tianzhu Lu, Yahan Zheng, Xiaomeng Gong, Qiao‐Li Lv, Junjun Chen, Ziwei Tu, Lin Shen, Qiaojuan Guo, Jingao Li
Software Mentions: 3
Published: over 3 years ago

10.1186/s12967-021-02865-8

Metabolic classification of bladder cancer based on multi-omics integrated analysis to predict patient prognosis and treatment response
Cited by: 11
Author(s): Chaozhi Tang, Meng Yu, Jiakang Ma, Yuyan Zhu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2019.01285

Patterns of Immune Infiltration in HNC and Their Clinical Implications: A Gene Expression-Based Study
Cited by: 28
Author(s): Jukun Song, Zhili Deng, Jiaming Su, Dongbo Yuan, Jianguo Liu, Jianguo Zhu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphar.2021.713331

Inhibition of BCL9 Modulates the Cellular Landscape of Tumor-Associated Macrophages in the Tumor Immune Microenvironment of Colorectal Cancer
Cited by: 4
Author(s): Wei Zhuang, Ming Yang, Mei Feng, Zhongen Wu, Rina Rosin‐Arbesfeld, Jianyu Dong, Di Zhu
Software Mentions: 3
Published: about 3 years ago

10.3389/fpsyt.2021.628361

A Potential Autophagy-Related Competing Endogenous RNA Network and Corresponding Diagnostic Efficacy in Schizophrenia
Cited by: 12
Author(s): Rongjie Li, Qiaoye Wang, Yufen Qiu, Youshi Meng, Lei Wei, Hao Wang, Ruikang Mo, Donghua Zou, Chunbin Liu
Software Mentions: 3
Published: over 3 years ago

10.1186/s12885-019-5308-y

Crosslink between Temozolomide and PD-L1 immune-checkpoint inhibition in glioblastoma multiforme
Cited by: 37
Author(s): Sabrina Heynckes, Karam Daka, Pamela Franco, Annette Gaebelein, Jan Hendrik Frenking, Roberto Doria-Medina, Irina Mader, Daniel Delev, Oliver Schnell, Dieter Henrik Heiland
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12967-020-02691-4

Model based on five tumour immune microenvironment-related genes for predicting hepatocellular carcinoma immunotherapy outcomes
Cited by: 24
Author(s): Xinyu Gu, Jun Guan, Jia Xu, Qiuxian Zheng, Chao Chen, Qin Yang, ChunHong Huang, Wang Gang, Haibo Zhou, Zhi Chen, Haihong Zhu
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12885-020-07298-y

HPV infection related immune infiltration gene associated therapeutic strategy and clinical outcome in HNSCC
Cited by: 8
Author(s): Hao Zeng, Xindi Song, Jianrui Ji, Linyan Chen, Qimeng Liao, Xuelei Ma
Software Mentions: 3
Published: about 4 years ago

10.1186/s12885-019-6470-y

Gene signature characteristic of elevated stromal infiltration and activation is associated with increased risk of hematogenous and lymphatic metastasis in serous ovarian cancer
Cited by: 36
Author(s): Huiran Yue, Jieyu Wang, Ruifang Chen, Xiaoman Hou, Jun Li, Xin Lu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08356-9

Genome instability-related long non-coding RNA in clear renal cell carcinoma determined using computational biology
Cited by: 9
Author(s): Yutao Wang, Kexin Yan, Linhui Wang, Jianbin Bi
Software Mentions: 3
Published: over 3 years ago

10.1186/s12967-020-02647-8

Co-expression of cancer driver genes: IDH-wildtype glioblastoma-derived tumorspheres
Cited by: 4
Author(s): Seon‐Jin Yoon, Ho‐Young Son, Jae Yong Shim, Ju Hyung Moon, Eui Hyun Kim, Jong Hee Chang, Wan Yee Teo, Se Hoon Kim, Park Sw, Yong Min Huh, Seok‐Gu Kang
Software Mentions: 3
Published: almost 4 years ago

10.7150/jca.45553

The miR-370/UQCRC2 axis facilitates tumorigenesis by regulating epithelial-mesenchymal transition in Gastric Cancer
Cited by: 11
Author(s): Danwen Wang, Fei Su, Tao Zhang, Tiecheng Yang, Huaqiao Wang, Lei Yang, Fenfang Zhou, Feng Mao
Software Mentions: 3
Published: almost 5 years ago

10.1111/jcmm.15595

Mining TCGA database for genes of prognostic value in gastric cancer microenvironment
Cited by: 10
Author(s): Qingzhi Lan, Peng Wang, Shan Tian, Weiguo Dong
Software Mentions: 3
Published: over 4 years ago

10.1111/jcmm.16181

Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
Cited by: 32
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12859-019-3271-x

Dynamically characterizing individual clinical change by the steady state of disease-associated pathway
Cited by: 2
Author(s): Shaoyan Sun, Xiangtian Yu, Fengnan Sun, Ying Tang, Juan Zhao, Tao Zeng
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12967-020-02552-0

Profiling pro-neural to mesenchymal transition identifies a lncRNA signature in glioma
Cited by: 18
Author(s): Qingyu Liang, Gefei Guan, Xue Li, Chunmi Wei, Jianqing Wu, Cheng Peng, Anhua Wu, Wen Cheng
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-015-0510-7

Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia
Cited by: 12
Author(s): Xinan Yang, Meiyi Li, Bin Wang, Wei Zhu, Aurelie Desgardin, Kenan Onel, Jill de Jong, Jianjun Chen, Luonan Chen, John M. Cunningham
Software Mentions: 3
Published: over 9 years ago

10.1111/jcmm.16536

FABP5 enhances malignancies of lower‐grade gliomas via canonical activation of NF‐κB signaling
Cited by: 19
Author(s): Yichang Wang, Alafate Wahafu, Wei Wu, Jianyang Xiang, Longwei Huo, Xudong Ma, Ning Wang, Hao Líu, Xia Bai, Dongze Xu, Wei Xie, Maode Wang, Jia Wang
Software Mentions: 3
Published: over 3 years ago

10.1038/s41597-019-0225-0

A multi-modal data resource for investigating topographic heterogeneity in patient-derived xenograft tumors
Cited by: 8
Author(s): Satwik Rajaram, Maike A. Roth, Julia Malato, Scott R. VandenBerg, Byron Hann, Chloé E. Atreya, Steven J. Altschuler, Lani F. Wu
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-04961-6

A Novel Unsupervised Algorithm for Biological Process-based Analysis on Cancer
Cited by: 3
Author(s): Tianci Song, Sha Cao, Sheng Ce Tao, Shuhua Liang, Wei Du, Yanchun Liang
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-23858-6

Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element
Cited by: 15
Author(s): Ryo Miyazaki, Hirokazu Yano, Vladimir Sentchilo, van der Peter Meer
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-25357-0

Invasive lobular and ductal breast carcinoma differ in immune response, protein translation efficiency and metabolism
Cited by: 64
Author(s): Tian Du, Li Zhu, Kevin M. Levine, Nilgun Tasdemir, Adrian V. Lee, Dario A.A. Vignali, Bennett Van Houten, George C. Tseng
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-27897-x

TIMP2 is a Poor Prognostic Factor and Predicts Metastatic Biological Behavior in Gastric Cancer
Cited by: 25
Author(s): Wei Wang, Yifan Zhang, Mingxing Liu, Yang Wang, Tao Yang, Dongsheng Li, Feng Ding, Guang Bai, Qing Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-38568-w

Brg1 promotes liver regeneration after partial hepatectomy via regulation of cell cycle
Cited by: 20
Author(s): Baocai Wang, Benedikt Kaufmann, Thomas Engleitner, Liyun Miao, Carolin Mogler, Victor Olsavszky, Rupert Öllinger, Suyang Zhong, Cyrill Géraud, Zhao Cheng, Roland Rad, Roland M. Schmid, Helmut Friess, Norbert Hüser, Daniel Hartmann, Guido von Figura
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.202224

Expression profiles revealed potential kidney injury caused by SARS-CoV-2: a systematic analysis of ACE2 and clinical lessons learned from this discovery
Cited by: 2
Author(s): Jukun Song, Jianguo Zhu, Wei-Ming Chen, Guohua Zhu, Wei Wang, Chi Chen, Zhenyu Jia, Yan Zha, Ping Xu, Zheng Wang, Fa Sun, Xiangyan Zhang
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-019-43409-x

TGFβ-induced cytoskeletal remodeling mediates elevation of cell stiffness and invasiveness in NSCLC
Cited by: 22
Author(s): Evgeny Gladilin, Sebastian Ohse, Melanie Boerries, Hauke Busch, Cong Xu, Martin Schneider, Michael Meister, Roland Eils
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103974

Comprehensive analysis of cancer hallmarks in cutaneous melanoma and identification of a novel unfolded protein response as a prognostic signature
Cited by: 7
Author(s): Qi Wan, Lin Jin, Zhichong Wang
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-019-50220-1

Drivers of AR indifferent anti-androgen resistance in prostate cancer cells
Cited by: 41
Author(s): Florian Handle, Stefan Prekovic, Christine Helsen, Thomas Van den Broeck, Elien Smeets, Lisa Moris, Roy Eerlings, Sarah El Kharraz, Alfonso Urbanucci, Ian G. Mills, Steven Joniau, Gerhardt Attard, Frank Claessens
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-50963-x

Gene network approach reveals co-expression patterns in nasal and bronchial epithelium
Cited by: 11
Author(s): Kai Imkamp, Victor Bernal, Marco Grzegorzcyk, Péter Horvatovich, Cornelis J Vermeulen, Irene H. Heijink, Victor Guryev, Huib A. M. Kerstjens, Maarten van den Berge, Alen Faiz
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-84465-6

B2M overexpression correlates with malignancy and immune signatures in human gliomas
Cited by: 34
Author(s): Hao Zhang, Biqi Cui, Yulai Zhou, Xinxing Wang, Wantao Wu, Zeyu Wang, Ziyu Dai, Quan Cheng, Kui Yang
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-90507-w

High expression of PARD3 predicts poor prognosis in hepatocellular carcinoma
Cited by: 4
Author(s): Song-Wei Li, Jian Huang, Fan Yang, Haiping Zeng, Yuyun Tong, Kejia Li
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.103601

PDIA3 correlates with clinical malignant features and immune signature in human gliomas
Cited by: 29
Author(s): Hao Zhang, Yulai Zhou, Quan Cheng, Ziyu Dai, Zeyu Wang, Fangkun Liu, Fan Fan, Biqi Cui, Hui Cao
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-94784-3

A prospective study revealing the role of an immune-related eRNA, WAKMAR2, in breast cancer
Cited by: 7
Author(s): Linbang Wang, Jingkun Liu, Jiaojiao Tai, Nina Zhou, Tianji Huang, Yuzhou Xue, Zhengxue Quan
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.203102

Alterations in the RTK/Ras/PI3K/AKT pathway serve as potential biomarkers for immunotherapy outcome of diffuse gliomas
Cited by: 11
Author(s): Song Han, Pengfei Wang, Hong‐Qing Cai, Jinghai Wan, Shouwei Li, Ze-Huan Lin, Chunmei Yu, Yan Chen
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-95064-w

Myeloid-resident neuropilin-1 influences brown adipose tissue in obesity
Cited by: 1
Author(s): Roberto Diaz-Marin, Sergio Crespo-Garcia, Ariel M. Wilson, Manuel Buscarlet, Agnieszka Dejda, Frédérik Fournier, Rachel Juneau, Thierry Alquier, Przemysław Sapieha
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-96952-x

RNA-seq profiling reveals PBMC RNA as a potential biomarker for hepatocellular carcinoma
Cited by: 14
Author(s): Zhiyi Han, Wenxing Feng, Rui Hu, Qinyu Ge, Wenfeng Ma, Wei Zhang, Shaomin Xu, Bolin Zhan, Lai Zhang, Xinfeng Sun, Xiaozhou Zhou
Software Mentions: 3
Published: about 3 years ago

10.7150/thno.48711

Identification of glycogene-type and validation of ST3GAL6 as a biomarker predicts clinical outcome and cancer cell invasion in urinary bladder cancer
Cited by: 23
Author(s): Sumiya Dalangood, Zhen Zhu, Zhihui Ma, Jiaxuan Li, Qinghe Zeng, Yi‐Lin Yan, Bing Shen, Jun Yan, Ruimin Huang
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.202625

FAM72 serves as a biomarker of poor prognosis in human lung adenocarcinoma
Cited by: 14
Author(s): Yilin Yu, Zhiping Wang, Qunhao Zheng, Jiancheng Li
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.203456

m6A regulator-mediated methylation modification patterns and tumor microenvironment infiltration characterization in hepatocellular carcinoma
Cited by: 13
Author(s): Xiongpei Huang, Zecheng Qiu, Liusheng Li, Bin Chen, Peiyuan Huang
Software Mentions: 3
Published: about 3 years ago

Projects: bioconductor: GSVA

Papers Mentioning GSVA 893