Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DTA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DTA

Dynamic Transcriptome Analysis
1 version
Latest release: about 1 year ago
1 dependent package
21,420 downloads total

Papers Mentioning DTA 21

10.1186/s41512-021-00094-7

Methods for Evaluation of medical prediction Models, Tests And Biomarkers (MEMTAB) 2020 Symposium
Cited by: 0
Author(s):
Software Mentions: 5
Published: over 3 years ago

<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracy
Cited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0147649

MorphoTester: An Open Source Application for Morphological Topographic Analysis
Cited by: 53
Author(s): Julia M. Winchester
Software Mentions: 5
Published: almost 9 years ago

10.7717/peerj.9371

pulseTD: RNA life cycle dynamics analysis based on pulse model of 4sU-seq time course sequencing data
Cited by: 0
Author(s): Xin Wang, Siyu He, Jian Li, Jun Wang, Chengyi Wang, Mingwei Wang, Danni He, Xingfeng Lv, Qiuyan Zhong, Hongjiu Wang, Zhenzhen Wang
Software Mentions: 4
Published: over 4 years ago

10.3389/fvets.2020.00176

Animal Disease Surveillance in the 21st Century: Applications and Robustness of Phylodynamic Methods in Recent U.S. Human-Like H3 Swine Influenza Outbreaks
Cited by: 1
Author(s): Moh A. Alkhamis, Chong Li, Montserrat Torremorell
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2105-8-483

PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system
Cited by: 17
Author(s): Arnaud Droit, Joanna M. Hunter, Michèle Rouleau, Chantal Éthier, Aude Picard-Cloutier, David Bourgais, Guy G. Poirier
Software Mentions: 3
Published: about 17 years ago

10.1186/1471-2164-14-552

De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading
Cited by: 82
Author(s): Caiqin Li, Yanyan Wang, Xu-Ming Huang, Jiang Li, Huicong Wang, Jianguo Li
Software Mentions: 3
Published: almost 12 years ago

10.3389/fgene.2020.598318

Applications of Support Vector Machine in Genomic Prediction in Pig and Maize Populations
Cited by: 17
Author(s): Wei Zhao, Xueshuang Lai, Dengying Liu, Zhenyang Zhang, Peipei Ma, Qishan Wang, Zhe Zhang, Yuchun Pan
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pntd.0009449

Mathematical modelling and phylodynamics for the study of dog rabies dynamics and control: A scoping review
Cited by: 13
Author(s): Maylis Layan, Simon Dellicour, Guy Baele, Simon Cauchemez, Hervé Bourhy
Software Mentions: 2
Published: over 3 years ago

10.3390/polym12061272

Study on Cellulose Acetate Butyrate/Plasticizer Systems by Molecular Dynamics Simulation and Experimental Characterization
Cited by: 12
Author(s): Weizhe Wang, Lijie Li, Shaohua Jin, Yalun Wang, Yu Chen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1007189

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration
Cited by: 19
Author(s): Jing Yang, Nicola F. Müller, Remco R. Bouckaert, Bing Xu, Alexei J. Drummond
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13174297

Relevant and Non-Redundant Feature Selection for Cancer Classification and Subtype Detection
Cited by: 7
Author(s): Pratip Rana, Phuc Thai, Thang N. Dinh, Preetam Ghosh
Software Mentions: 2
Published: over 3 years ago

10.1111/pce.13078

Complex bud architecture and cell-specific chemical patterns enable supercooling of<i>Picea abies</i>bud primordia
Cited by: 34
Author(s): Edith Kuprian, Caspar Munkler, Anna Resnyak, Sonja Zimmermann, Tan D. Tuong, Notburga Gierlinger, Thomas Müller, David P. Livingston, Gilbert Neuner
Software Mentions: 2
Published: about 7 years ago

10.3390/s19092191

Plummeting Broadcast Storm Problem in Highways by Clustering Vehicles Using Dominating Set and Set Cover
Cited by: 9
Author(s): S. Kamakshi, V. S. Shankar Sriram
Software Mentions: 1
Published: over 5 years ago

10.3390/ma10070758

A New Biphasic Dicalcium Silicate Bone Cement Implant
Cited by: 8
Author(s): Fausto Zuleta, A. Murciano, Sérgio Alexandre Gehrke, José Eduardo Maté-Sánchez de Val, José Luís Calvo-Guirado, Piedad N. De Aza
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1005421

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation
Cited by: 203
Author(s): Nicola De Maio, Chieh-Hsi Wu, Kathleen O’Reilly, Daniel J. Wilson
Software Mentions: 1
Published: over 9 years ago

10.1007/s00294-014-0453-y

A novel role for lncRNAs in cell cycle control during stress adaptation
Cited by: 36
Author(s): Carme Solé, Mariona Nadal-Ribelles, Eulàlia de Nadal, Francesc Posas
Software Mentions: 1
Published: about 10 years ago

10.1155/2018/9042180

Telemedicine and Geriatrics in France: Inventory of Experiments
Cited by: 12
Author(s): Abrar Ahmad Zulfiqar, Amir Hajjam El Hassani, Samy Talha, Mohamed Hajjam, Jawad Hajjam, Sylvie Ervé
Software Mentions: 1
Published: over 6 years ago

10.3389/fncel.2015.00435

Automated measurement of fast mitochondrial transport in neurons
Cited by: 12
Author(s): Kyle E. Miller, Xin An Liu, Sathyanarayanan V. Puthanveettil
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2018.01561

Novel Traits, Flower Symmetry, and Transcriptional Autoregulation: New Hypotheses From Bioinformatic and Experimental Data
Cited by: 9
Author(s): Aniket Sengupta, Lena C. Hileman
Software Mentions: 1
Published: about 6 years ago

10.1002/anie.202014567

Pre‐Planarized Triphenylamine‐Based Linear Mixed‐Valence Charge‐Transfer Systems
Cited by: 10
Author(s): Marcel Krug, Nina Fröhlich, Dominik Fehn, Alexander L. Vogel, Frank Röminger, Karsten Meyer, Timothy Clark, Milan Kivala, Dirk M. Guldi
Software Mentions: 1
Published: almost 4 years ago