bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3390/genes12091391

Time Course Analysis of Genome-Wide Identification of Mutations Induced by and Genes Expressed in Response to Carbon Ion Beam Irradiation in Rice (Oryza sativa L.)
Cited by: 5
Author(s): Jian Zhang, Ziai Peng, Qiling Liu, Gangyi Yang, Libin Zhou, Wenjian Li, Hui Wang, Zhiqiang Chen, Tao Guo
Software Mentions: 1
Published: about 5 years ago

10.3390/genes12081113

Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion
Cited by: 2
Author(s): Michael Schwabe, Sven Griep, Henrike Schmidtberg, Rudy Plarre, Alexander Goesmann, Andreas Vilcinskas, Heiko Vogel, Karina Brinkrolf
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-020-04239-3

Neospora caninum infection induces an isolate virulence-dependent pro-inflammatory gene expression profile in bovine monocyte-derived macrophages
Cited by: 9
Author(s): Marta García-Sánchez, Laura Jiménez-Pelayo, Pilar Horcajo, Esther Collantes-Fernández, Luís Miguel Ortega-Mora, Javier Regidor‐Cerrillo
Software Mentions: 1
Published: over 6 years ago

10.3390/genes12060909

Integrative Modelling of Gene Expression and Digital Phenotypes to Describe Senescence in Wheat
Cited by: 4
Author(s): Anyela Valentina Camargo Rodriguez
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009252

Human FcRn expression and Type I Interferon signaling control Echovirus 11 pathogenesis in mice
Cited by: 10
Author(s): Alexandra I. Wells, Kalena A. Grimes, Kenneth S. Kim, Emilie Branche, Christopher J. Bakkenist, William H. DePas, Sujan Shresta, Carolyn B. Coyne
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes12050668

The Peroxiredoxin Asp f3 Acts as Redox Sensor in Aspergillus fumigatus
Cited by: 5
Author(s): Jana M Boysen, Nauman Saeed, Thomas Wolf, Gianni Panagiotou, Falk Hillmann
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12040583

Computational and Transcriptomic Analysis Unraveled OsMATE34 as a Putative Anthocyanin Transporter in Black Rice (Oryza sativa L.) Caryopsis
Cited by: 15
Author(s): Enerand Mackon, Yafei Ma, Guibeline Charlie Jeazet Dongho Epse Mackon, Babar Usman, Yitong Zhao, Qiufeng Li, Piqing Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12040504

Transcriptional Dynamics of Genes Purportedly Involved in the Control of Meiosis, Carbohydrate, and Secondary Metabolism during Sporulation in Ganoderma lucidum
Cited by: 6
Author(s): Manjun Cai, Xiaowei Liang, Yuanchao Liu, Huiping Hu, Yizhen Xie, Shaodan Chen, Xiong Guan, Xiangmin Li, Chun Xiao, Diling Chen, Qingping Wu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12040480

Genome-Wide Analyses Reveal Genetic Convergence of Prolificacy between Goats and Sheep
Cited by: 9
Author(s): Tao Lin, Xiaoyun He, Yanting Jiang, Yufang Liu, Yina Ouyang, Yezhen Shen, Qionghua Hong
Software Mentions: 1
Published: over 5 years ago

10.1186/s13024-021-00453-4

Modulating innate immune activation states impacts the efficacy of specific Aβ immunotherapy
Cited by: 3
Author(s): Yona Levites, Cory C. Funk, Xue Wang, Paramita Chakrabarty, Karen N. McFarland, Baxter Bramblett, Veronica O’Neal, Xufei Liu, Thomas B. Ladd, Max Robinson, Mariet Allen, Minerva M. Carrasquillo, Dennis W. Dickson, Pedro Cruz, Danny Ryu, Hong Dong Li, Nathan D. Price, Nilüfer Ertekin-Taner, Todd E. Golde
Software Mentions: 1
Published: over 5 years ago

10.1186/s13024-019-0322-8

Hippocampal stem cells promotes synaptic resistance to the dysfunctional impact of amyloid beta oligomers via secreted exosomes
Cited by: 33
Author(s): Maria Adelaide Micci, Balaji Krishnan, Elizabeth A. Bishop, Wen Ru Zhang, Jutatip Guptarak, Ashley Grant, Olga Zolochevska, Batbayar Tumurbaatar, Whitney Franklin, Claudia Mariño, Steven G. Widen, Arjun Luthra, Steven G. Kernie, Giulio Taglialatela
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.20166

The IDO inhibitor 1-methyl tryptophan activates the aryl hydrocarbon receptor response in mesenchymal stromal cells
Cited by: 23
Author(s): Christopher N. Lewis, Raghavan Chinnadurai, Steven E. Bosinger, Jacques Galipeau
Software Mentions: 1
Published: over 9 years ago

10.3390/genes12030457

Regulation of DNA (de)Methylation Positively Impacts Seed Germination during Seed Development under Heat Stress
Cited by: 17
Author(s): Jaiana Malabarba, David Windels, Wenjia Xu, Jérôme Verdier
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009534

Dual transcriptional analysis reveals adaptation of host and pathogen to intracellular survival of Pseudomonas aeruginosa associated with urinary tract infection
Cited by: 24
Author(s): Cristina Peñaranda, Nicole M. Chumbler, Deborah T. Hung
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12030329

Quantifying Fetal Reprogramming for Biomarker Development in the Era of High-Throughput Sequencing
Cited by: 0
Author(s): Fu‐Sheng Chou, Krystel Newton, Pei-Shan Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12020160

Transcriptional Differences between Canine Cutaneous Epitheliotropic Lymphoma and Immune-Mediated Dermatoses
Cited by: 1
Author(s): Nadja Gerber, Magdalena A. T. Brunner, Vidhya Jagannathan, Tosso Leeb, Nora M. Gerhards, Monika Maria Welle, Martina Dettwiler
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13024-018-0297-x

Development and validation of a simplified method to generate human microglia from pluripotent stem cells
Cited by: 217
Author(s): Amanda McQuade, Morgan A. Coburn, Christina H. Tu, Jonathan Hasselmann, Hayk Davtyan, Mathew Blurton‐Jones
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes12020179

Transcriptome Analysis and Cell Morphology of Vitis rupestris Cells to Botryosphaeria Dieback Pathogen Diplodia seriata
Cited by: 3
Author(s): Liang Zhao, Shuangmei You, Zhang Hui, Xin Guan
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes11111289

Transcriptome Analysis Reveals Functional Diversity in Salivary Glands of Plant Virus Vector, Graminella nigrifrons
Cited by: 4
Author(s): Swapna Priya Rajarapu, Raman Bansal, Priyanka Mittapelly, Andrew P. Michel
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11111354

Computational Analysis of Targeting SARS-CoV-2, Viral Entry Proteins ACE2 and TMPRSS2, and Interferon Genes by Host MicroRNAs
Cited by: 53
Author(s): Jacob B. Pierce, Viorel Simion, Basak Icli, Daniel Pérez‐Cremades, Henry S. Cheng, Mark W. Feinberg
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13024-020-00360-0

Parkinson’s disease-related Leucine-rich repeat kinase 2 modulates nuclear morphology and genomic stability in striatal projection neurons during aging
Cited by: 21
Author(s): Xi Chen, Chuanmiao Xie, Wen Tian, Lixin Sun, Zheng Wang, Sarah Hawes, Lisa Chang, Justin Kung, Jinhui Ding, Shengdi Chen, Weidong Le, Huaibin Cai
Software Mentions: 1
Published: over 6 years ago

10.1007/s12035-020-01868-8

Selected microRNAs Increase Synaptic Resilience to the Damaging Binding of the Alzheimer’s Disease Amyloid Beta Oligomers
Cited by: 19
Author(s): Olga Zolochevska, Giulio Taglialatela
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes11091096

Export of Rgg Quorum Sensing Peptides is Mediated by the PptAB ABC Transporter in Streptococcus Thermophilus Strain LMD-9
Cited by: 6
Author(s): Abarna Lingeswaran, Coralie Metton, Céline Henry, Véronique Monnet, Vincent Juillard, Rozenn Gardan
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11080919

Brassinosteroid Priming Improves Peanut Drought Tolerance via Eliminating Inhibition on Genes in Photosynthesis and Hormone Signaling
Cited by: 28
Author(s): Lüping Huang, Lei Zhang, Ruier Zeng, Xinyue Wang, Huajian Zhang, Leidi Wang, Shiyuan Liu, Xuewen Wang, Tingting Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11060615

Could the Heat Shock Proteins 70 Family Members Exacerbate the Immune Response in Multiple Sclerosis? An in Silico Study
Cited by: 17
Author(s): Luigi Chiricosta, Agnese Gugliandolo, Placido Bramantı, Emanuela Mazzon
Software Mentions: 1
Published: over 6 years ago

10.1007/s12035-019-1585-3

Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions
Cited by: 32
Author(s): Maria Sobol, Joakim Klar, Loora Laan, Mansoureh Shahsavani, Jens Schuster, Göran Annerén, Anne Konzer, Jia Mi, Jonas Bergquist, Jessica Nordlund, Jan Hoeber, Mikael Huss, Anna Falk, Niklas Dahl
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11040422

Comparative Transcriptomic Analysis of Subcutaneous Adipose Tissue from Local Pig Breeds
Cited by: 21
Author(s): André Albuquerque, Cristina Óvilo, Yolanda Núñez, Rita Benítez, Adrián López-García, Fabián García, Maria do Rosário Félix, Marta Laranjo, Rui Charneca, J.M. Martins
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020122

Identification of ADPKD-Related Genes and Pathways in Cells Overexpressing PKD2
Cited by: 4
Author(s): Zhe Zhang, Yanna Dang, Zizengceng Wang, Huanan Wang, Yuchun Pan, Jin He
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1009887

Aconitate decarboxylase 1 participates in the control of pulmonary Brucella infection in mice
Cited by: 13
Author(s): Aurore Demars, Armelle Vitali, Audrey Comein, Elodie Carlier, Abdulkader Azouz, Stanislas Goriely, Justine Smout, Véronique Flamand, Mégane Van Gysel, Johan Wouters, Jan Abendroth, Thomas E. Edwards, Arnaud Machelart, Eik Hoffmann, Priscille Brodin, Xavier De Bolle, Eric Muraille
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11020229

Ubiquitin E3 Ligase AaBre1 Responsible for H2B Monoubiquitination Is Involved in Hyphal Growth, Conidiation and Pathogenicity in Alternaria alternata
Cited by: 2
Author(s): Ye Liu, Jingjing Xin, Lina Liu, Aiping Song, Yuan Liao, Zhiyong Guan, Weimin Fang, Fadi Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020228

Comparative Transcriptome Analysis Reveals Stem Secondary Growth of Grafted Rosa rugosa ‘Rosea’ Scion and R. multiflora ‘Innermis’ Rootstock
Cited by: 5
Author(s): Jie Sun, Ruiyang Hu, Fuling Lv, Yongqiang Yang, Zhimin Tang, Guangshun Zheng, Jianbo Li, Hua Tian, Yan Xu, Shaofeng Li
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020177

Transcriptomic and Metabolomic Changes Triggered by Fusarium solani in Common Bean (Phaseolus vulgaris L.)
Cited by: 22
Author(s): Limin Chen, Quancong Wu, Tianjun He, Jianjun Liu, Ding Li, Liu Ting-fu, Qianqian Wu, Yiming Pan, Tingting Chen
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms17081324

Genes Expressed Differentially in Hessian Fly Larvae Feeding in Resistant and Susceptible Plants
Cited by: 7
Author(s): Ming‐Shun Chen, Sanzhen Liu, Haiyan Wang, Xiaoyan Cheng, Mustapha El Bouhssini, R. Jeff Whitworth
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms17101758

Stage-Wise Identification and Analysis of miRNA from Root-Knot Nematode Meloidogyne incognita
Cited by: 12
Author(s): Parthiban Subramanian, Inchan Choi, Vimalraj Mani, Jun Hyung Park, Sathiyamoorthy Subramaniyam, Kang-Hyun Choi, Ji Hyun Sim, Chang-Muk Lee, Jun Mo Koo, Bum-Soo Hahn
Software Mentions: 1
Published: about 10 years ago

10.3390/genes10121035

Comparative Transcriptome Analysis of Gonads for the Identification of Sex-Related Genes in Giant Freshwater Prawns (Macrobrachium Rosenbergii) Using RNA Sequencing
Cited by: 21
Author(s): Jianping Jiang, Xiang Yuan, Qiu Qingqing, Guanghua Huang, Qinyang Jiang, Penghui Fu, Yu Zhang, Yinhai Jia, Xiurong Yang, Hesheng Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1093/pcmedi/pbaa037

Vegetarian diets, circulating miRNA expression and healthspan in subjects living in the Blue Zone
Cited by: 9
Author(s): Tiantian Liu, Nicole M. Gatto, Zhong Chen, Hongyu Qiu, Grace Lee, Penelope J. Duerksen-Hughes, Gary E. Fraser, Charles Wang
Software Mentions: 1
Published: about 6 years ago

10.1111/mmi.14156

Characterisation of the Toxoplasma gondii tyrosine transporter and its phosphorylation by the calcium‐dependent protein kinase 3
Cited by: 17
Author(s): Bethan A. Wallbank, Caia Dominicus, Malgorzata Broncel, Nathalie Legrave, Gavin Kelly, James I. MacRae, Henry M. Staines, Moritz Treeck
Software Mentions: 1
Published: almost 8 years ago

10.1073/pnas.1811768116

Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain
Cited by: 44
Author(s): Anne L. Sapiro, Anat Shmueli, Gilbert L. Henry, Qin Li, Tali Shalit, Orly Yaron, Yoav Paas, Galit Shohat-Ophir
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.molmet.2021.101227

The Mediator complex kinase module is necessary for fructose regulation of liver glycogen levels through induction of glucose-6-phosphatase catalytic subunit (G6pc)
Cited by: 3
Author(s): Dou Yeon Youn, Alus M. Xiaoli, Haihong Zong, Junichi Okada, Li Liu, Jacob B. Pessin, Jeffrey E. Pessin, Fajun Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-020-2284-y

Transcriptome profiling of differentially expressed genes in cytoplasmic male-sterile line and its fertility restorer line in pigeon pea (Cajanus cajan L.)
Cited by: 11
Author(s): Swati Saxena, Sarika Sahu, Tanvi Kaila, Deepti Nigam, Pavan K. Chaduvla, A. Ramachandra Rao, Sankaran Sandhya, Nagendra Singh, Kishor Gaikwad
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes10121034

Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.
Cited by: 3
Author(s): Yaru Fu, Tianyu Dong, Tan Li-zhi, Danni Yin, Miaomiao Zhang, Guomiao Zhao, Meixia Ye, Rongling Wu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms18091977

Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection
Cited by: 44
Author(s): Libo He, Aidi Zhang, Lv Xiong, Yongming Li, Rong Huang, Lanjie Liao, Zhu Zhang, And Yaping Wang
Software Mentions: 1
Published: about 9 years ago

10.1073/pnas.1912074117

Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters
Cited by: 21
Author(s): Mathieu Boulard, Sofia Rucli, John Edwards, Timothy H. Bestor
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10120951

Transcriptome Analysis and Identification of Insecticide Tolerance-Related Genes after Exposure to Insecticide in Sitobion avenae
Cited by: 19
Author(s): Ning Wei, Yongzhi Zhong, Lulu Lin, Minghui Xie, Guangling Zhang, Weihua Su, Chuanren Li, Haoliang Chen
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.molmet.2017.07.014

Single-cell RNA-sequencing reveals a distinct population of proglucagon-expressing cells specific to the mouse upper small intestine
Cited by: 64
Author(s): Leslie Glass, Fernando J. Calero-Nieto, Wajid Jawaid, Pierre Larraufie, Richard G. Kay, Berthold Göttgens, Frank Reimann, Fiona M. Gribble
Software Mentions: 1
Published: about 9 years ago

10.3390/genes10110929

Genomic Variance and Transcriptional Comparisons Reveal the Mechanisms of Leaf Color Affecting Palatability and Stressed Defense in Tea Plant
Cited by: 11
Author(s): Xuewen Wang, Benying Liu, Qingshi Zhao, Xuemei Sun, Youyong Li, Duan ZhiFen, Xinli Miao, Shan Luo, Jianbin Li
Software Mentions: 1
Published: about 7 years ago

10.1073/pnas.2026183118

Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD + capping
Cited by: 14
Author(s): Hailei Zhang, Huan Zhong, Xufeng Wang, Shoudong Zhang, Xiaojian Shao, Hao Hu, Zhi‐Ling Yu, Zongwei Cai, Xuemei Chen, Yiji Xia
Software Mentions: 1
Published: over 5 years ago

10.1016/j.molmet.2017.08.016

Host–microbiota interaction induces bi-phasic inflammation and glucose intolerance in mice
Cited by: 29
Author(s): Antonio Molinaro, Robert Caesar, Louise Mannerås Holm, Valentina Tremaroli, Patrice D. Cani, Fredrik Bäckhed
Software Mentions: 1
Published: about 9 years ago

10.3390/genes10100821

Non-Coding RNA Sequencing of Equine Endometrium During Maternal Recognition of Pregnancy
Cited by: 7
Author(s): K.M. Klohonatz, Stephen J. Coleman, Ashley D. Cameron, Ann Hess, Kailee J. Reed, Ángela Cánovas, Juan F. Medrano, Alma Islas–Trejo, Theodore S. Kalbfleisch, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: about 7 years ago

10.1186/s10020-018-0009-6

Analysis of menstrual effluent: diagnostic potential for endometriosis
Cited by: 44
Author(s): Laura Warren, Andrew Shih, Susana Marquez Renteira, Tamer Seckin, Brandon Blau, Kim R. Simpfendorfer, Annette Lee, Christine N. Metz, Peter K. Gregersen
Software Mentions: 1
Published: over 8 years ago

10.3390/genes10100749

Coding RNA Sequencing of Equine Endometrium during Maternal Recognition of Pregnancy
Cited by: 12
Author(s): K.M. Klohonatz, Stephen J. Coleman, Alma Islas–Trejo, Juan F. Medrano, Ann Hess, Theodore S. Kalbfleisch, M. G. Thomas, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10100824

Implications of Gene Inheritance Patterns on the Heterosis of Abdominal Fat Deposition in Chickens
Cited by: 13
Author(s): Chunning Mai, Chaoliang Wen, Chang Sun, Zhi‐Yuan Xu, Sirui Chen, Ning Yang
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.21577

Tamoxifen sensitivity-related microRNA-342 is a useful biomarker for breast cancer survival
Cited by: 37
Author(s): Joseph C. Young, Tsutomu Kawaguchi, Li Yan, Qianya Qi, Song Liu, Kazuaki Takabe
Software Mentions: 1
Published: about 9 years ago

10.1186/s12866-020-01873-w

Genome sequence and spore germination-associated transcriptome analysis of Corynespora cassiicola from cucumber
Cited by: 10
Author(s): Shigang Gao, Rong Zeng, Lihui Xu, Zhiwei Song, Ping Gao, Fangyin Dai
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.22216

GEJ cancers: gastric or esophageal tumors? searching for the answer according to molecular identity
Cited by: 14
Author(s): Williams Fernandes Barra, Fabiano Cordeiro Moreira, Aline Cruz, André Salim Khayat, Danielle Queiroz Calcagno, Ney Pereira Carneiro dos Santos, Rui Wanderley Mascarenhas, Taíssa Maíra Thomaz Araújo, Geraldo Ishak, Sâmia Demachki, Rommel Rodrı́guez Burbano, Ândrea Ribeiro-dos-Santos, Sidney Emanuel Batista dos Santos, Gregory J. Riggins, Paulo Pimentel de Assumpção
Software Mentions: 1
Published: about 9 years ago

10.3390/genes10090712

The Pituitary Transcriptional Response Related to Feed Conversion in Pigs
Cited by: 6
Author(s): Katarzyna Piórkowska, Kacper Żukowski, M. Tyra, Magdalena Szyndler-Nędza, K. Szulc, E. Skrzypczak, Katarzyna Ropka‐Molik
Software Mentions: 1
Published: about 7 years ago

10.1007/s13238-020-00811-w

Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection
Cited by: 63
Author(s): Rongjuan Pei, Jianqi Feng, Yecheng Zhang, Hao Sun, Lian Li, Xuejie Yang, Jiangping He, Shuqi Xiao, Ji Xiong, Ying Lin, Kai Wen, Hongwei Zhou, Jiekai Chen, Zhili Rong, Xinwen Chen
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms19051467

Circulating MicroRNAs in Young Patients with Acute Coronary Syndrome
Cited by: 19
Author(s): Kind-Leng Tong, Ahmad Syadi Mahmood Zuhdi, Wan Azman Wan Ahmad, Paul M. Vanhoutte, João Pedro de Magalhães, Mohd Rais Mustafa, Pooi-Fong Wong
Software Mentions: 1
Published: over 8 years ago

10.3390/genes10080601

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Cited by: 30
Author(s): Johanna Nelkner, Gonzalo Arturo Torres Tejerizo, Julia Hassa, Timo Wentong Lin, J. Witte, Bart Verwaaijen, Anderson M. Winkler, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Rita Grosch, Alfred Pühler, Andreas Schlüter
Software Mentions: 1
Published: over 7 years ago

10.1007/s00213-018-5094-2

Altered fecal microbiota composition in the Flinders sensitive line rat model of depression
Cited by: 39
Author(s): Sandra Tillmann, Anders Abildgaard, Gudrun Winther, Gregers Wegener
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.21877

Azacitidine combined with the selective FLT3 kinase inhibitor crenolanib disrupts stromal protection and inhibits expansion of residual leukemia-initiating cells in FLT3-ITD AML with concurrent epigenetic mutations
Cited by: 14
Author(s): Anne-Kathrin Garz, Saskia Wolf, Sonja Grath, Verena I. Gaidzik, Stefan Habringer, Binje Vick, Martina Rudelius, Christoph Ziegenhain, Sylvia Herold, Marie‐Theresa Weickert, Martha Smets, Christian Peschel, Robert A.J. Oostendorp, Sebastian Bultmann, Irmela Jeremias, Christian Thiede, Konstanze Döhner, Ulrich Keller, Katharina Götze
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.22724

Optimizing prognosis-related key miRNA-target interactions responsible for cancer metastasis
Cited by: 1
Author(s): Hongying Zhao, Huating Yuan, Jing Hu, Chaohan Xu, Gaoming Liao, Wenkang Yin, Liwen Xu, Li Wang, Xinxin Zhang, Shi Ai, Jing Li, Yun Xiao
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes10060465

Transcriptome Changes during Major Developmental Transitions Accompanied with Little Alteration of DNA Methylome in Two Pleurotus Species
Cited by: 8
Author(s): Jiawei Wen, Zhibin Zhang, Lei Gong, Hongwei Xun, Juzuo Li, Qiyu Bao, Qi Wang, Yongming Li, Li Yu, Liu B
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10020111

Identification of Genes Involved in Low Temperature-Induced Senescence of Panicle Leaf in Litchi chinensis
Cited by: 2
Author(s): Congcong Wang, Hao Liu, Shanlin Yu, Houbin Chen, Fuchu Hu, Huiling Zhan, Xifen Pan, Yuhua Lao, Silin Zhong, Biyan Zhou
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes10020145

Dynamic Expression of Interferon Lambda Regulated Genes in Primary Fibroblasts and Immune Organs of the Chicken
Cited by: 10
Author(s): Arslan Mehboob, Xin Yang, Diwakar Santhakumar, Xingjian Liu, Xiaoyuan Hu, Muhammad Munir, Yinü Li, Zhifang Zhang
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19092631

Transcriptome Analysis of Novosphingobium pentaromativorans US6-1 Reveals the Rsh Regulon and Potential Molecular Mechanisms of N-acyl-l-homoserine Lactone Accumulation
Cited by: 8
Author(s): Haijun Lu, Yili Huang
Software Mentions: 1
Published: about 8 years ago

10.1098/rsos.171743

Glucocorticoids modulate gastrointestinal microbiome in a wild bird
Cited by: 74
Author(s): José C. Noguera, Manuel Aira, Marcos Pérez‐Losada, Jorge Domínguez, Alberto Velando
Software Mentions: 1
Published: over 8 years ago

10.3390/genes9120624

Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila ananassae
Cited by: 18
Author(s): Annabella Königer
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes9120627

A-to-I RNA Editing Affects lncRNAs Expression after Heat Shock
Cited by: 4
Author(s): Roni Haas, Nabeel S. Ganem, Ayya Keshet, Angela Orlov, Ayelet Fishman, Ayelet T. Lamm
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2020.00672

Analysis of Dynamic Global Transcriptional Atlas Reveals Common Regulatory Networks of Hormones and Photosynthesis Across Nicotiana Varieties in Response to Long-Term Drought
Cited by: 13
Author(s): Jing Wang, Shihua Zhang, Yunpeng Fu, Tiantian He, Xuewen Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00370

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii
Cited by: 22
Author(s): Marina Puigvert, Rodrigo Guarischi-Sousa, Paola Zuluaga, Núria S. Coll, Alberto P. Macho, João Carlos Setúbal, Marc Valls
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.632788

Association Mapping and Transcriptome Analysis Reveal the Genetic Architecture of Maize Kernel Size
Cited by: 3
Author(s): Jian Ma, Lifeng Wang, Yongsong Cao, Hao Wang, Huiyong Li
Software Mentions: 1
Published: over 5 years ago

10.1016/j.redox.2019.101323

A Caenorhabditis elegans ortholog of human selenium-binding protein 1 is a pro-aging factor protecting against selenite toxicity
Cited by: 16
Author(s): Karl Köhnlein, Nadine Urban, David Guerrero-Gómez, Holger Steinbrenner, Pavel Urbánek, Josephine Priebs, Philipp Koch, Christoph Kaether, Antonio Miranda‐Vizuete, Lars‐Oliver Klotz
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19102924

Genome Wide Transcriptome Analysis Reveals Complex Regulatory Mechanisms Underlying Phosphate Homeostasis in Soybean Nodules
Cited by: 47
Author(s): Yingbin Xue, Q. J. Zhuang, Shengnan Zhu, Bi-Xian Xiao, Chaojie Liang, Hong Liao, Jichun Tian
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms19103158

Comparative Analysis of the Integument Transcriptomes between stick Mutant and Wild-Type Silkworms
Cited by: 3
Author(s): Tan D, Hai Hu, Xiaoling Tong, Minjin Han, Songyuan Wu, Xin Ding, Fangyin Dai, Cheng Lü
Software Mentions: 1
Published: about 8 years ago

10.1007/s00438-020-01674-w

Disruption of carotene biosynthesis leads to abnormal plastids and variegated leaves in Brassica napus
Cited by: 5
Author(s): Xiaobin Zhao, Kaining Hu, Mei Yan, Bin Yi, Jing Wen, Chaozhi Ma, Tingdong Fu, Jinxing Tu
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.629089

Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.)
Cited by: 14
Author(s): Martina Kintlová, Jan Vrána, Roman Hobza, Nicolas Blavet, Vojtěch Hudzieczek
Software Mentions: 1
Published: over 5 years ago

10.1530/REP-21-0209

Effect of in vitro growth on mouse oocyte competency, mitochondria and transcriptome
Cited by: 6
Author(s): Tomoya Takashima, Tsubasa Fujimaru, Yayoi Obata
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01064

Unraveling the Transcriptional Basis of Temperature-Dependent Pinoxaden Resistance in Brachypodium hybridum
Cited by: 16
Author(s): Maor Matzrafi, Lidor Shaar-Moshe, Baruch Rubin, Zvi Peleg
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.660226

Exogenous Gene Expression and Insect Resistance in Dual Bt Toxin Populus × euramericana ‘Neva’ Transgenic Plants
Cited by: 11
Author(s): Yachao Ren, Xinglu Zhou, Yan Dong, Jun Zhang, Jinmao Wang, Minsheng Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.01188

Plant Immune System Activation Upon Citrus Leprosis Virus C Infection Is Mimicked by the Ectopic Expression of the P61 Viral Protein
Cited by: 13
Author(s): Gabriella Dias Arena, Pedro Luis Ramos-González, Bryce W. Falk, Clare L. Casteel, Juliana Freitas-Astúa, Marcos Antônio Machado
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.00776

Identification of QTLs Containing Resistance Genes for Sclerotinia Stem Rot in Brassica napus Using Comparative Transcriptomic Studies
Cited by: 31
Author(s): Muhammad Uzair Qasim, Qing Zhao, Muhammad Shahid, Rana Abdul Samad, Sunny Ahmar, Jian Wu, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2019.01574

Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici
Cited by: 20
Author(s): Sowmya Ramachandran, Nicholas A. Mueth, Ping Zheng, Scot H. Hulbert
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.598483

Variation Between Three Eragrostis tef Accessions in Defense Responses to Rhopalosiphum padi Aphid Infestation
Cited by: 6
Author(s): Nathan M Gyan, Beery Yaakov, Nati Weinblum, Anuradha Singh, Alon Cna’ani, Shiran Ben‐Zeev, Yehoshua Saranga, Vered Tzin
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2019.01341

Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus
Cited by: 6
Author(s): Rubina Jibran, Jessica Spencer, Gina E. Fernandez, Amparo Monfort, Mourad Mnejja, Helge Dzierzon, Jibran Tahir, Kevin Davies, David Chagné, Toshi Foster
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.664792

Alternative Oxidase Inhibition Impairs Tobacco Root Development and Root Hair Formation
Cited by: 3
Author(s): Yang Liu, Lulu Yu, Peng Ye, Geng Xinxin, Fei Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.02056

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)—A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes
Cited by: 30
Author(s): Karolina Chwiałkowska, Urszula Korotko, Joanna Kosińska, Iwona Szarejko, Mirosław Kwaśniewski
Software Mentions: 1
Published: almost 9 years ago

10.3389/fphys.2021.660402

Acute Effects on the Human Peripheral Blood Transcriptome of Decompression Sickness Secondary to Scuba Diving
Cited by: 8
Author(s): Kurt Magri, Ingrid Eftedal, Vanessa Petroni Magri, Lyubisa Matity, Charles Paul Azzopardi, Stephen Muscat, Nikolai Paul Pace
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2019.01568

Comparative Transcriptome Analysis of the Heat Stress Response in Monochamus alternatus Hope (Coleoptera: Cerambycidae)
Cited by: 27
Author(s): Hui Li, Xinyi Zhao, Heng Qiao, Xuanyu He, Jiajin Tan, Dejun Hao
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2020.565307

Identification of Potentially Relevant Genes for Excessive Exercise-Induced Pathological Cardiac Hypertrophy in Zebrafish
Cited by: 6
Author(s): Zuoqiong Zhou, Lan Zheng, Cui Tang, Zhanglin Chen, Runkang Zhu, Xiyang Peng, Xiushan Wu, Ping Zhu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2021.648056

Gestational Low Protein Diet Modulation on miRNA Transcriptome and Its Target During Fetal and Breastfeeding Nephrogenesis
Cited by: 2
Author(s): Letícia de Barros Sene, Gabriela Leme Lamana, André Schwambach Vieira, Wellerson Rodrigo Scarano, José Antônio Rocha Gontijo, Patrícia Aline Bôer
Software Mentions: 1
Published: over 5 years ago

10.1002/mgg3.1451

NPC1 silent variant induces skipping of exon 11 (p.V562V) and unfolded protein response was found in a specific Niemann‐Pick type C patient
Cited by: 5
Author(s): Marisa Encarnação, Maria Francisca Coutinho, Soo Min Cho, Maria Teresa Cardoso, Isaura Ribeiro, Paulo H.M. Chaves, Juliana Inês Santos, Dulce Quelhas, Lúcia Lacerda, Elisa Leão‐Teles, Anthony H. Futerman, Laura Vilarinho, Sandra Alves
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.27528

Synergistic cytotoxic activity of cannabinoids fromcannabis sativaagainst cutaneous T-cell lymphoma (CTCL)in-vitroandex-vivo
Cited by: 24
Author(s): Moran Mazuz, Amir Tiroler, Lilach Moyal, Emmilia Hodak, Stalin Nadarajan, A. C. Vinayaka, Batia Gorovitz-Haris, Ido Lubin, Avi Drori, Guy Drori, Owen Van Cauwenberghe, Adi Faigenboim, Dvora Namdar, Iris Amitay‐Laish, Hinanit Koltai
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-1295-4

Expression of SMARCD1 interacts with age in association with asthma control on inhaled corticosteroid therapy
Cited by: 4
Author(s): Michael J. McGeachie, Joanne E. Sordillo, Amber Dahlin, Alberta L. Wang, Sharon M. Lutz, Kelan G. Tantisira, Ronald Allan M Panganiban, Quan Lu, Satria Sajuthi, Cydney Urbanek, Rachel S. Kelly, Benjamin Saef, Celeste Eng, Sam S. Oh, Alvin T. Kho, Damien C. Croteau‐Chonka, Scott T. Weiss, Benjamin A. Raby, Angel C. Y. Mak, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold, Ann Chen Wu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2020.588082

Transcriptomic Analyses Reveal the Protective Immune Regulation of Conjugated Linoleic Acids in Sheep Ruminal Epithelial Cells
Cited by: 10
Author(s): Chunlei Yang, Wei Lan, Shijie Ye, Binna Zhu, Zhengwei Fu
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-020-01402-3

T2 and T17 cytokines alter the cargo and function of airway epithelium-derived extracellular vesicles
Cited by: 12
Author(s): Elisabeth Ax, Zala Jevnikar, Aleksander Cvjetkovic, Carina Malmhäll, Henric Olsson, Madeleine Rådinger, Cecilia Lässer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-01522-w

Dexamethasone rescues TGF-β1-mediated β2-adrenergic receptor dysfunction and attenuates phosphodiesterase 4D expression in human airway smooth muscle cells
Cited by: 7
Author(s): Elena Chung, Christie A. Ojiaku, Gaoyuan Cao, Vishal Parikh, B.T. Deeney, Shengjie Xu, Serena Wang, Reynold A. Panettieri, Cynthia Koziol‐White
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-021-01645-8

Qi-Long-Tian formula extract alleviates symptoms of acute high-altitude diseases via suppressing the inflammation responses in rat
Cited by: 7
Author(s): Xing Fu, Chunyan Yang, Bing Chen, Kexing Zeng, Siyuan Chen, Fujin Yi
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules25020354

The Effects of Ultraviolet A/B Treatments on Anthocyanin Accumulation and Gene Expression in Dark-Purple Tea Cultivar ‘Ziyan’ (Camellia sinensis)
Cited by: 49
Author(s): Li Wei, Liqiang Tan, Yao Zou, Xiaoqin Tan, Jiacheng Huang, Wei Chen, Qian Tang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2020.630037

Transcriptomic and Metabolomic Analyses of Diaphorina citri Kuwayama Infected and Non-infected With Candidatus Liberibacter Asiaticus
Cited by: 6
Author(s): Kai Liu, Jiawei He, Ziying Guan, Mingzhao Zhong, Rui Pang, Qunxin Han
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583