bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1186/s12864-019-5991-8

Contrasting gene expression patterns in grain of high and low asparagine wheat genotypes in response to sulphur supply
Cited by: 18
Author(s): Tanya Y. Curtis, Sarah Raffan, Yongfang Wan, Robert C. King, Asier Gonzalez-Uriarte, Nigel G. Halford
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-019-6250-8

Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum
Cited by: 8
Author(s): Qi Yang, Shibiao Liu, Xiaoning Han, Jingyi Ma, Wenhong Deng, Xinli Wang, Hongwei Guo, Xinli Xia
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12081113

Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion
Cited by: 2
Author(s): Michael Schwabe, Sven Griep, Henrike Schmidtberg, Rudy Plarre, Alexander Goesmann, Andreas Vilcinskas, Heiko Vogel, Karina Brinkrolf
Software Mentions: 1
Published: about 4 years ago

10.3390/genes12091391

Time Course Analysis of Genome-Wide Identification of Mutations Induced by and Genes Expressed in Response to Carbon Ion Beam Irradiation in Rice (Oryza sativa L.)
Cited by: 5
Author(s): Jian Zhang, Ziai Peng, Qiling Liu, Gangyi Yang, Libin Zhou, Wenjian Li, Hui Wang, Zhiqiang Chen, Tao Guo
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.695007

Aberrant Expression of Circulating MicroRNA Leads to the Dysregulation of Alpha-Synuclein and Other Pathogenic Genes in Parkinson’s Disease
Cited by: 15
Author(s): Meng Cai, Songshan Chai, Tao Xiong, Jun Wei, Weibing Mao, Yasha Zhu, Xiang Li, Wei Wei, Xuan Dai, Bangkun Yang, Wen Li, Bing Shu, Mengyang Wang, Taojunjin Lu, Yuankun Cai, Zhixin Zheng, Zhimin Mei, Yixuan Zhou, Jingyi Yang, J. W. Zhao, Lei Shen, Joshua W. K. Ho, Jincao Chen, Nanxiang Xiong
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-021-07715-x

De novo transcriptome sequencing and anthocyanin metabolite analysis reveals leaf color of Acer pseudosieboldianum in autumn
Cited by: 16
Author(s): Yufu Gao, Dong-Hui Zhao, Jiaqi Zhang, Jia-Shuo Chen, Jialin Li, Zhuo Weng, Liping Rong
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.571677

Epidermal Growth Factor Is Essential for the Maintenance of Novel Prostate Epithelial Cells Isolated From Patient-Derived Organoids
Cited by: 12
Author(s): Katia Cheaito, Hisham F. Bahmad, Hiba A. Jalloul, Ola Hadadeh, Hiba Msheik, Albert El Hajj, Deborah Mukherji, Mohamed Al-Sayegh, Wassim Abou-Kheir
Software Mentions: 1
Published: over 4 years ago

10.1007/s13258-021-01076-1

Overlapping and non-overlapping roles of the class-I histone deacetylase-1 corepressors LET-418, SIN-3, and SPR-1 in Caenorhabditis elegans embryonic development
Cited by: 2
Author(s): Yukihiko Kubota, Yuto Ohnishi, Tasuku Hamasaki, Gen Yasui, Natsumi Ota, Hiromu Kitagawa, Arashi Esaki, Muhamad Fahmi, Masahiro Ito
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-021-07513-5

Integrative microRNAome analysis of skeletal muscle of Colossoma macropomum (tambaqui), Piaractus mesopotamicus (pacu), and the hybrid tambacu, based on next-generation sequencing data
Cited by: 3
Author(s): B. E. A. Fantinatti, Érika Stefani Perez, Bruna Tereza Thomazini Zanella, Jéssica Silvino Valente, Tassiana Gutierrez de Paula, Edson Assunção Mareco, Robson Francisco Carvalho, Silvano Piazza, Michela Alessandra Denti, Maeli Dal-Pai-Silva
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.672406

Stepwise Induction of Inner Ear Hair Cells From Mouse Embryonic Fibroblasts via Mesenchymal- to-Epithelial Transition and Formation of Otic Epithelial Cells
Cited by: 2
Author(s): Qiong Yang, Haibo Shi, Yizhou Quan, Qianqian Chen, Wang Li, Li Wang, Yonghui Wang, Zhongzhong Ji, Shankai Yin, Huiming Xu, Wei‐Qiang Gao
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2021.720858

A Model of Waardenburg Syndrome Using Patient-Derived iPSCs With a SOX10 Mutation Displays Compromised Maturation and Function of the Neural Crest That Involves Inner Ear Development
Cited by: 8
Author(s): Jie Wen, Jian Song, Yijiang Bai, Yalan Liu, Xinzhang Cai, Lingyun Mei, Lu Ma, Chufeng He, Yong Feng
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12263-019-0630-1

High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with high-fat diet-induced hepatic insulin resistance in mice
Cited by: 13
Author(s): Xue Zhao, Chen Zhao, Zengyuan Zhou, Yuzheng Li, Yuan‐Yuan Wang, Zihao Zhou, Huimin Lu, Chongde Sun, Xia Chu
Software Mentions: 1
Published: over 6 years ago

10.5713/ajas.20.0248

Identification of genes involved in inbreeding depression of reproduction in Langshan chickens
Cited by: 6
Author(s): Qian Xue, Guohui Li, Yuxia Cao, Jianmei Yin, Yunji Zhu, Huiyong Zhang, Chixing Zhou, Haiyu Shen, Xiaowei Dou, Su YiJun, Kehua Wang, Jianmin Zou, Han Wang
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2021.619538

Conditional Loss of BAF (mSWI/SNF) Scaffolding Subunits Affects Specification and Proliferation of Oligodendrocyte Precursors in Developing Mouse Forebrain
Cited by: 5
Author(s): Eman Abbas, Mohamed A. Hassan, Godwin Sokpor, Kamila A. Kiszka, Linh Pham, Cemil Kerimoğlu, André Fischer, Huu Phuc Nguyen, Jochen F. Staiger, Tran Tuoc
Software Mentions: 1
Published: about 4 years ago

10.1590/1678-4685-GMB-2019-0255

Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
Cited by: 8
Author(s): Nicole Moreira Vetö, Frank Guzmán, Franceli Rodrigues Kulcheski, Ana Lúcia Anversa Segatto, Maria Eduarda G Lacerda, Rogério Margis, Andreia Carina Turchetto‐Zolet
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.661122

LECT 2 Antagonizes FOXM1 Signaling via Inhibiting MET to Retard PDAC Progression
Cited by: 2
Author(s): Xin Li, Pingping Lin, Ye Tao, Xin Jiang, Ting Li, Yunshan Wang, Chenjing Wang, Yu Cao
Software Mentions: 1
Published: over 4 years ago

10.1590/1678-4685-GMB-2019-0373

Gene expression evaluation of antioxidant enzymes in patients with hepatocellular carcinoma: RT-qPCR and bioinformatic analyses
Cited by: 7
Author(s): Andressa de Freitas Alves, Ana Carolina de Moura, Huander Felipe Andreolla, Ana Beatriz Gorini da Veiga, Marilu Fiegenbaum, Márcia Giovenardi, Silvana Almeida
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.563607

Cytomegalovirus Generates Assembly Compartment in the Early Phase of Infection by Perturbation of Host-Cell Factors Recruitment at the Early Endosome/Endosomal Recycling Compartment/Trans-Golgi Interface
Cited by: 12
Author(s): Pero Lučin, Natalia Jug Vučko, Ljerka Karleuša, Hana Mahmutefendić Lučin, Gordana Blagojević Zagorac, Berislav Lisnić, Valentino Pavišić, Marina Marcelić, Kristina Grabušić, Ilija Brizić, Silvija Lukanović Jurić
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.622539

Human Wharton’s Jelly Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles Drive Oligodendroglial Maturation by Restraining MAPK/ERK and Notch Signaling Pathways
Cited by: 10
Author(s): Marianne Joerger-Messerli, Gierin Florence Thomi, Valérie Haesler, Irene Keller, Patricia Renz, Daniel Surbek, Andreina Schoeberlein
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.609090

Blockade of Macrophage CD147 Protects Against Foam Cell Formation in Atherosclerosis
Cited by: 3
Author(s): Jianjun Lv, Hao Wang, Hong‐Yong Cui, Ze-Kun Liu, Renyu Zhang, Ling Meng, Can Li, Yu‐Le Yong, Man Liu, Hai Zhang, Tianjiao Zhang, Kun Zhang, Gang Li, Gang Nan, Cong Zhang, Shuangping Guo, Ling Wang, Zhi‐Nan Chen, Huijie Bian
Software Mentions: 1
Published: over 4 years ago

10.1097/HS9.0000000000000514

Gene Expression Profiling Predicts Sensitivity of Chronic Lymphocytic Leukemia Cells to Dasatinib
Cited by: 0
Author(s): Tamara J. Blätte, Marcin M. Machnicki, Eliza Głodkowska-Mrówka, Anna Dolnik, Marta Karp, Agnieszka Karczmarczyk, Krzysztof Giannopoulos, Lars Bullinger, Tomasz Stokłosa
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.567610

Impact of Sustained Transforming Growth Factor-β Receptor Inhibition on Chromatin Accessibility and Gene Expression in Cultured Human Endometrial MSC
Cited by: 15
Author(s): Raffaella Lucciola, Pavle Vrljicak, Shanti Gurung, Caitlin E. Filby, Saeedeh Darzi, Joanne Muter, Sascha Ott, Jan J. Brosens, Caroline E. Gargett
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.685261

Transcriptome Profiling of Mouse Corpus Callosum After Cerebral Hypoperfusion
Cited by: 3
Author(s): Hajime Takase, Gen Hamanaka, Ryo Ohtomo, Hidehiro Ishikawa, Kelly K. Chung, Emiri T. Mandeville, Josephine Lok, Myriam Fornage, Karl Herrup, Kai Hei Tse, Eng H. Lo, Ken Arai
Software Mentions: 1
Published: about 4 years ago

10.1186/s41065-020-00153-x

Comparative transcriptomic analysis of the tea plant (Camellia sinensis) reveals key genes involved in pistil deletion
Cited by: 2
Author(s): Yufei Liu, Dan Pang, Yaping Tian, Youyong Li, Hong-Yan Jiang, Yanxia Sun, Lifei Xia, Linbo Chen
Software Mentions: 1
Published: almost 5 years ago

10.1186/s41065-021-00188-8

Identification and characterization of miRNAs associated with sterile flower buds in the tea plant based on small RNA sequencing
Cited by: 4
Author(s): Hao Qu, Yue Liu, Hong-Yan Jiang, Yuanyuan Liu, Weixi Song, Linbo Chen
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2021.654397

The Scleraxis Transcription Factor Directly Regulates Multiple Distinct Molecular and Cellular Processes During Early Tendon Cell Differentiation
Cited by: 11
Author(s): Han Liu, Jingyue Xu, Yu Lan, Hee‐Woong Lim, Rulang Jiang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-019-0206-7

Effective genome editing and identification of a regiospecific gallic acid 4-O-glycosyltransferase in pomegranate (Punica granatum L.)
Cited by: 28
Author(s): Liming Chang, Sheng Wu, Li Tian
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.621578

Identification of Key Histone Modifications and Their Regulatory Regions on Gene Expression Level Changes in Chronic Myelogenous Leukemia
Cited by: 6
Author(s): Lu-Qiang Zhang, Guoliang Fan, Jun-Jie Liu, Li Liu, Qian‐Zhong Li, Hao Lin
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-017-3875-3

Differential regulation of miRNA and mRNA expression in the myocardium of Nrf2 knockout mice
Cited by: 14
Author(s): Justin M. Quiles, Madhusudhanan Narasimhan, Gobinath Shanmugam, Brett Milash, John R. Hoidal, Namakkal S. Rajasekaran
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-019-5988-3

Comparative transcriptomic analysis reveals gene expression associated with cold adaptation in the tea plant Camellia sinensis
Cited by: 70
Author(s): Yeyun Li, Xuewen Wang, Qiuyan Ban, Xiangxiang Zhu, Changjun Jiang, Chaoling Wei, Jeffrey L. Bennetzen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41438-020-00455-1

Chromosome-scale genome assembly provides insights into the evolution and flavor synthesis of passion fruit (Passiflora edulis Sims)
Cited by: 52
Author(s): Zhiqiang Xia, Dongmei Huang, Shengkui Zhang, Wenquan Wang, Funing Ma, Bin Wu, Yi Xu, Biao Xu, Di Chen, Meiling Zou, Hongtao Xu, Xiaojin Zhou, Rulin Zhan, Santai Song
Software Mentions: 1
Published: over 4 years ago

10.1152/ajplung.00557.2017

The vagal ganglia transcriptome identifies candidate therapeutics for airway hyperreactivity
Cited by: 9
Author(s): Leah R. Reznikov, David K. Meyerholz, Mahmoud H. Abou Alaiwa, Shin‐Ping Kuan, Yan‐Shin Liao, Nicholas L. Bormann, Thomas B. Bair, Margaret P. Price, David A. Stoltz, Michael J. Welsh
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcvm.2021.639361

Pro-inflammatory Monocyte Phenotype During Acute Progression of Cerebral Small Vessel Disease
Cited by: 6
Author(s): Marlies P. Noz, Annemieke ter Telgte, Kim Wiegertjes, Anil M. Tuladhar, Charlotte Kaffa, Simone Kersten, Siroon Bekkering, Charlotte D C C van der Heijden, Alexander Hoischen, Leo A. B. Joosten, Mihai G. Netea, Marco Duering, Frank–Erik de Leeuw, Niels P. Riksen
Software Mentions: 1
Published: about 4 years ago

10.3389/fcvm.2021.737826

microRNA-377 Signaling Modulates Anticancer Drug-Induced Cardiotoxicity in Mice
Cited by: 4
Author(s): John Henderson, Praveen Dubey, Mallikarjun Patil, Sarojini Singh, Shubham Dubey, Rajasekaran Namakkal Soorappan, Ramaswamy Kannappan, Palaniappan Sethu, Gangjian Qin, Jianyi Zhang, Prasanna Krishnamurthy
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41438-021-00576-1

DNA repair- and nucleotide metabolism-related genes exhibit differential CHG methylation patterns in natural and synthetic polyploids (Brassica napus L.)
Cited by: 10
Author(s): Ling Yin, Zhendong Zhu, Liangjun Huang, Xuan Luo, Yun Li, Chaowen Xiao, Jin Yang, Jisheng Wang, Qiong Zou, Lanrong Tao, Zeming Kang, Rong Tang, Maolin Wang, Shaohong Fu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-018-4590-4

Paramutation-like features of multiple natural epialleles in tomato
Cited by: 16
Author(s): Quentin Gouil, David C. Baulcombe
Software Mentions: 1
Published: over 7 years ago

10.3389/fcvm.2021.664044

Uncovering Potential lncRNAs and mRNAs in the Progression From Acute Myocardial Infarction to Myocardial Fibrosis to Heart Failure
Cited by: 9
Author(s): Shuo Wang, Enmao Wang, Qincong Chen, Yan Yang, Lei Xu, Xiaolei Zhang, Rubing Wu, Xitian Hu, Zhihong Wu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-020-0262-z

Lipidomic and transcriptomic analysis reveals reallocation of carbon flux from cuticular wax into plastid membrane lipids in a glossy “Newhall” navel orange mutant
Cited by: 20
Author(s): Hu Wan, Hongbo Liu, Jingyu Zhang, Yi Lyu, Zhuoran Li, Yuan He, Xiaoliang Zhang, Xiuxin Deng, Yariv Brotman, Alisdair R. Fernie, Yunjiang Cheng, Weiwei Wen
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.00392

Exploring the Role of SRC in Extraocular Muscle Fibrosis of the Graves’ Ophthalmopathy
Cited by: 3
Author(s): Mingyu Hao, Jingxue Sun, Yaguang Zhang, Dexin Zhang, Jun Han, Jirong Zhang, Hong Qiao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-5512-9

Sex differences in gene regulation in the dorsal root ganglion after nerve injury
Cited by: 52
Author(s): K Stephens, Weiqiang Zhou, Zhicheng Ji, Zhiyong Chen, Shaoqiu He, Hongkai Ji, Yun Guan, Sean D. Taverna
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-021-07785-x

Simultaneous changes in anthocyanin, chlorophyll, and carotenoid contents produce green variegation in pink–leaved ornamental kale
Cited by: 7
Author(s): Yang Liu, Xin Feng, Yuting Zhang, Fuhui Zhou, Pengfang Zhu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-021-07506-4

Immune-related genes of the larval Holotrichia parallela in response to entomopathogenic nematodes Heterorhabditis beicherriana LF
Cited by: 7
Author(s): Li ErTao, Jianhui Qin, Honglin Feng, Jinqiao Li, Xiaofeng Li, Innocent Nyamwasa, Yujin Cao, Weibin Ruan, Kebin Li, Jing Yin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41438-020-00366-1

The GAMYB-like gene SlMYB33 mediates flowering and pollen development in tomato
Cited by: 28
Author(s): Yan Zhang, Bo Zhang, Yang Tao, Jie Zhang, Bin Liu, Xiangqiang Zhan, Yan Liang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-018-4500-9

Transcriptomic changes in Cucurbita pepo fruit after cold storage: differential response between two cultivars contrasting in chilling sensitivity
Cited by: 20
Author(s): Fátima Carvajal, Raquel Rosales, Francisco Palma, Susana Manzano, Joaquı́n Cañizares, Manuel Jamilena, Dolores Garrido
Software Mentions: 1
Published: over 7 years ago

10.1186/s40793-019-0344-4

Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils
Cited by: 11
Author(s): Jana Voříšková, Bo Elberling, Anders Priemé
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12199-019-0840-6

Transcriptome analysis of the hippocampus in environmental noise-exposed SAMP8 mice reveals regulatory pathways associated with Alzheimer’s disease neuropathology
Cited by: 10
Author(s): Donghong Su, Wenlong Li, Huimin Chi, Honglian Yang, Xiaojun She, Kun Wang, Xiujie Gao, Kefeng Ma, Ming Zhang, Bo Cui
Software Mentions: 1
Published: over 5 years ago

10.1038/s41438-021-00518-x

A gene that underwent adaptive evolution, LAC2 (LACCASE), in Populus euphratica improves drought tolerance by improving water transport capacity
Cited by: 20
Author(s): Zhimin Niu, Guiting Li, Hongbo Hu, Jiaojiao Lv, Qiwei Zheng, Jianquan Liu, Dongshi Wan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-6391-9

Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance
Cited by: 20
Author(s): Roni Tadmor‐Levi, Adi Doron‐Faigenboim, Evgeniya Marcos‐Hadad, Jules Petit, Gideon Hulata, Maria Forlenza, G.F. Wiegertjes, Lior David
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-020-00946-1

Epigenomics and transcriptomics analyses of multiple system atrophy brain tissue supports a role for inflammatory processes in disease pathogenesis
Cited by: 4
Author(s): Conceição Bettencourt, Ignazio S. Piras, Sandrine C. Foti, Joshua S. Talboom, Yasuo Miki, Tammaryn Lashley, R. Balázs, Emmanuelle Viré, Thomas T. Warner, Matt Huentelman, Janice L. Holton
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-020-6648-3

Sexual-biased gene expression of olfactory-related genes in the antennae of Conogethes pinicolalis (Lepidoptera: Crambidae)
Cited by: 7
Author(s): Dapeng Jing, Tiantao Zhang, Shuxiong Bai, Kanglai He, Sivaprasath Prabu, Jing Luan, Zhenying Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5987-4

Deep RNA-Seq reveals miRNome differences in mammary tissue of lactating Holstein and Montbéliarde cows
Cited by: 24
Author(s): Pierre-Alexis Billa, Yannick Faulconnier, T. Ye, Mathilde Chervet, Fabienne Le Provost, José Pires, Christine Leroux
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41438-020-00451-5

Lignin provides mechanical support to herbaceous peony (Paeonia lactiflora Pall.) stems
Cited by: 26
Author(s): Daqiu Zhao, Yuting Luan, Xing Xia, Wanliang Shi, Yuhan Tang, Jun Tao
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.52168

Single cell analysis reveals human cytomegalovirus drives latently infected cells towards an anergic-like monocyte state
Cited by: 37
Author(s): Miri Shnayder, Aharon Nachshon, Batsheva Rozman, Biana Bernshtein, Michael Lavi, Noam Fein, Emma Poole, Selmir Avdic, Emily Blyth, David Gottlieb, Allison Abendroth, Barry Slobedman, John Sinclair, Noam Stern-Ginossar, Michal Schwartz
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07528-y

Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
Cited by: 14
Author(s): B. Dnate’ Baxter, Eric D. Larson, Laëtitia Merle, Paul Feinstein, Arianna Gentile Polese, Andrew N. Bubak, Christy S. Niemeyer, James E. Hassell, Doug P. Shepherd, Vijay R. Ramakrishnan, Maria A. Nagel, Diego Restrepo
Software Mentions: 1
Published: over 4 years ago

10.1186/s12940-019-0535-x

Transcriptome-wide analysis of changes in the fetal placenta associated with prenatal arsenic exposure in the New Hampshire Birth Cohort Study
Cited by: 19
Author(s): Emily F. Winterbottom, Yuguang Ban, Xiaodian Sun, Anthony J. Capobianco, Carmen J. Marsit, Xi Chen, Lily Wang, Margaret R. Karagas, David J. Robbins
Software Mentions: 1
Published: over 5 years ago

10.1530/ERC-18-0134

Oncometabolite induced primary cilia loss in pheochromocytoma
Cited by: 7
Author(s): Samuel O'Toole, David S. Watson, Tatiana Novoselova, Lisa E.L. Romano, Peter King, Teisha Y. Bradshaw, Claire Thompson, Martin M. Knight, Tyson V. Sharp, Michael R. Barnes, Umasuthan Srirangalingam, William M Drake, J. Paul Chapple
Software Mentions: 1
Published: over 6 years ago

10.1038/s41438-021-00520-3

The histone variant Sl_H2A.Z regulates carotenoid biosynthesis and gene expression during tomato fruit ripening
Cited by: 13
Author(s): Xuedong Yang, Xuelian Zhang, Youxin Yang, Hui Zhang, Weimin Zhu, Wen-Feng Nie
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-021-07888-5

Research on the drought tolerance mechanism of Pennisetum glaucum (L.) in the root during the seedling stage
Cited by: 14
Author(s): Ailing Zhang, Jicheng Yang, Min Sun, Chuang Lin, Puding Zhou, Juncai Ren, Dan Luo, Xiaoshan Wang, Congyu Ma, Xinquan Zhang, Guangyan Feng, Gang Nie, Linkai Huang
Software Mentions: 1
Published: about 4 years ago

10.1152/ajpcell.00112.2020

TNFα and IL-17 alkalinize airway surface liquid through CFTR and pendrin
Cited by: 21
Author(s): Tayyab Rehman, Ian M. Thornell, Alejandro A. Pezzulo, Andrew L. Thurman, Guillermo S. Romano Ibarra, Philip H. Karp, Ping Tan, Michael E. Duffey, Michael J. Welsh
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-019-0231-6

The ability to manipulate ROS metabolism in pepper may affect aphid virulence
Cited by: 8
Author(s): Mengjing Sun, Roeland E. Voorrips, Martijn van Kaauwen, Richard G. F. Visser, Ben Vosman
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3334-6

Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression
Cited by: 24
Author(s): Pallavi Chauhan, Maren Wellenreuther, Bengt Hansson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41438-021-00588-x

Dynamic changes in transposable element and gene methylation in mulberry (Morus notabilis) in response to Botrytis cinerea
Cited by: 15
Author(s): Youchao Xin, Bi Ma, Qiwei Zeng, Wenmin He, Meiling Qin, Ningjia He
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.24771

Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring
Cited by: 48
Author(s): Markus Vallaster, Shweta Kukreja, Xin Yang Bing, Jennifer Ngolab, Rubing Zhao-Shea, Paul Gardner, Andrew R. Tapper, Oliver J. Rando
Software Mentions: 1
Published: over 8 years ago

10.1016/j.ajhg.2015.05.009

Biallelic Mutations in NBAS Cause Recurrent Acute Liver Failure with Onset in Infancy
Cited by: 95
Author(s): Tobias B. Haack, Christian Staufner, Marlies Köpke, Beate K. Straub, Stefan Kölker, Christian Thiel, Peter Freisinger, Ivo Barić, Patrick McKiernan, Nicola Dikow, Inga Harting, Flemming Beisse, Peter Burgard, Urania Kotzaeridou, J. Kühr, Urban Himbert, Robert W. Taylor, Felix Distelmaier, Jerry Vockley, Lina Ghaloul‐Gonzalez, Johannes Zschocke, Laura S. Kremer, Elisabeth Graf, Thomas Schwarzmayr, Daniel M. Bader, Julien Gagneur, Thomas Wieland, Caterina Terrile, Tim M. Strom, Thomas Meitinger, Georg F. Hoffmann, Holger Prokisch
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-021-07951-1

Transcriptomic analysis of the seminal vesicle response to the reproductive toxicant acrylamide
Cited by: 6
Author(s): David A. Skerrett‐Byrne, Brett Nixon, Elizabeth G. Bromfield, James Breen, Natalie A. Trigg, Simone J. Stanger, Ilana R. Bernstein, Andy Anderson, Tessa Lord, Raymond Aitken, Shaun D. Roman, Sarah A. Robertson, John E. Schjenken
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41438-020-00387-w

Depicting the battle between nectarine and Monilinia laxa: the fruit developmental stage dictates the effectiveness of the host defenses and the pathogen’s infection strategies
Cited by: 21
Author(s): Marta Balsells-Llauradó, Christian J. Silva, J. Usall, Núria Vall‐llaura, Sandra Serrano-Prieto, Neus Teixidó, Saskia D Mesquida-Pesci, Antonieta De Cal, Bárbara Blanco-Ulate, Rosário Torres
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.ibror.2018.06.001

The transcriptome of the rat subfornical organ is altered in response to early postnatal overnutrition
Cited by: 7
Author(s): Colleen S. Peterson, Shuo Huang, Samantha A. Lee, Alastair V. Ferguson, Mark Fry
Software Mentions: 1
Published: over 6 years ago

10.1080/22221751.2019.1700762

Transcriptional response to metal starvation in the emerging pathogen Mycoplasma genitalium is mediated by Fur-dependent and –independent regulatory pathways
Cited by: 6
Author(s): Carlos Martínez-Torró, Sergi Torres-Puig, Marta Monge, Lucía Sánchez-Alba, Miguel González-Martín, Marina Marcos-Silva, Alex Perálvarez‐Marín, Françesc Canals, Enrique Querol, Jaume Piñol, Óscar Q. Pich
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.7966

Extensive alternative splicing triggered by mitonuclear mismatch in naturally introgressed Rhinolophus bats
Cited by: 2
Author(s): Wenli Chen, Xiuguang Mao
Software Mentions: 1
Published: about 4 years ago

10.1002/iid3.366

Transcriptomic analysis reveals novel mechanisms of SARS‐CoV‐2 infection in human lung cells
Cited by: 12
Author(s): Shaomin Yang, Songbin Wu, Zhijian Yu, Jia-Bin Huang, X.Y. Zhong, Xiao Dong Liu, Hua Zhu, Lizu Xiao, Qi Deng, Wuping Sun
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-018-4451-1

Differential gene expression in the evolution of sex pheromone communication in New Zealand’s endemic leafroller moths of the genera Ctenopseustis and Planotortrix
Cited by: 9
Author(s): Alessandro Grapputo, Amali H. Thrimawithana, Bernd Steinwender, Richard D. Newcomb
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-5319-0

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle
Cited by: 13
Author(s): Prerna Vohra, Roy R. Chaudhuri, Matthew Mayho, Christina Vrettou, Cosmin Chintoan-Uta, Nicholas R. Thomson, Jayne Hope, John Hopkins, Mark P. Stevens
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.5100

The harmful algae,Cochlodinium polykrikoidesandAureococcus anophagefferens, elicit stronger transcriptomic and mortality response in larval bivalves (Argopecten irradians) than climate change stressors
Cited by: 7
Author(s): Andrew W. Griffith, Matthew J. Harke, Elizabeth DePasquale, Dianna L. Berry, Christopher J. Gobler
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-019-6120-4

RNA-Seq based transcriptome analysis during bovine viral diarrhoea virus (BVDV) infection
Cited by: 28
Author(s): Cun Liu, Yanhan Liu, Lin Liang, Shangjin Cui, Yanming Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.immuni.2018.06.012

PD-1 Controls Follicular T Helper Cell Positioning and Function
Cited by: 294
Author(s): Jingwen Shi, Shiyue Hou, Qian Fang, Xin Liu, Xiaolong Liu, Hai Qi
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-021-07876-9

Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma
Cited by: 8
Author(s): Christos Dimitrakopoulos, Sravanth K. Hindupur, Marco Colombi, Dritan Liko, Charlotte K.Y. Ng, Salvatore Piscuoglio, Jonas Behr, Ariane L. Moore, Jochen Singer, Hans‐Joachim Ruscheweyh, Matthias S. Matter, Dirk Mossmann, Luigi Terracciano, Michael N. Hall, Niko Beerenwinkel
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.immuni.2019.01.009

Chemokine Receptor Redundancy and Specificity Are Context Dependent
Cited by: 83
Author(s): Douglas P. Dyer, Laura Medina-Ruiz, Robin Bartolini, Fabian Schuette, Catherine E. Hughes, Kenneth Pallas, Francesca Vidler, Megan K. L. MacLeod, Christopher J. Kelly, Kit Ming Lee, Christopher A.H. Hansell, Gerard J. Graham
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.5413

Gene expression correlates of facultative predation in the blow flyChrysomya rufifacies(Diptera: Calliphoridae)
Cited by: 6
Author(s): Meaghan L. Pimsler, Sing‐Hoi Sze, Sunday Saenz, Shuhua Fu, Jeffery K. Tomberlin, Aaron M. Tarone
Software Mentions: 1
Published: about 6 years ago

10.1016/j.immuni.2019.05.004

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells
Cited by: 202
Author(s): Sara Omenetti, Claudio Bussi, Amina Metidji, Andrea Iseppon, Sunjae Lee, Mauro Tolaini, Ying Liu, Gavin Kelly, Probir Chakravarty, Saeed Shoaie, Maximiliano G. Gutiérrez, Brigitta Stockinger
Software Mentions: 1
Published: about 6 years ago

10.1002/ece3.5563

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO2 vent
Cited by: 16
Author(s): Sven Uthicke, Nandan P. Deshpande, Michelle Liddy, Frances Patel, Miles D. Lamare, Marc R. Wilkins
Software Mentions: 1
Published: almost 6 years ago

10.15252/embr.201948354

A distinct metabolic state arises during the emergence of 2‐cell‐like cells
Cited by: 34
Author(s): Diego Rodriguez-Terrones, Götz Hartleben, Xavier Gaume, André Eid, Manuel Guthmann, Ane Iturbide, Maria-Elena Torres-Padilla
Software Mentions: 1
Published: over 5 years ago

10.15252/embr.201949583

Lipoic acid rejuvenates aged intestinal stem cells by preventing age‐associated endosome reduction
Cited by: 22
Author(s): Gang Du, Yicheng Qiao, Zhangpeng Zhuo, Jiaqi Zhou, Xiaorong Li, Zhiming Liu, Li Yang, Haiyang Chen
Software Mentions: 1
Published: about 5 years ago

10.4049/immunohorizons.1900099

The Taste Receptor TAS1R3 Regulates Small Intestinal Tuft Cell Homeostasis
Cited by: 42
Author(s): Michael R. Howitt, Ying Cao, Matthew B Gologorsky, Jessica A. Li, Adam L. Haber, Moshe Biton, Jessica Lang, Monia Michaud, Aviv Regev, Wendy S. Garrett
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-06961-9

Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks
Cited by: 16
Author(s): Jing Liu, Fei Shen, Yumei Xiao, Hongcheng Fang, Changwei Qiu, Wei Li, Ting Wu, Xuefeng Xu, Yi Wang, Xinzhong Zhang, Zhenhai Han
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.02106-18

Investigating the Biological Relevance of In Vitro -Identified Putative Packaging Signals at the 5′ Terminus of Satellite Tobacco Necrosis Virus 1 Genomic RNA
Cited by: 9
Author(s): Ioly Kotta‐Loizou, Hadrien Peyret, Keith Saunders, Robert H.A. Coutts, George P. Lomonossoff
Software Mentions: 1
Published: about 6 years ago

10.15252/embr.201948789

Non‐apoptotic TRAIL function modulates NK cell activity during viral infection
Cited by: 11
Author(s): Ludmila Cardoso Alves, Michael Berger, Θεόδωρος Κουτσανδρέας, Nick Kirschke, Christoph Lauer, Roman Spörri, Aristotelis Chatziioannou, Nadia Corazza, Philippe Krebs
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10091291

Dietary Cows’ Milk Protein A1 Beta-Casein Increases the Incidence of T1D in NOD Mice
Cited by: 25
Author(s): Joanne S. J. Chia, Jennifer L. McRae, Ashwantha Kumar Enjapoori, Christophe Lefèvre, Sonja Kukuljan, Karen M. Dwyer
Software Mentions: 1
Published: almost 7 years ago

10.1128/IAI.00866-16

The Rhomboid Protease GlpG Promotes the Persistence of Extraintestinal Pathogenic Escherichia coli within the Gut
Cited by: 18
Author(s): Colin W. Russell, Amanda C Richards, Alexander S. Chang, Matthew Mulvey
Software Mentions: 1
Published: about 8 years ago

10.1128/IAI.01423-15

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91 −/− phox Mice
Cited by: 22
Author(s): A. Grant, Olusegun Oshota, Roy R. Chaudhuri, Matthew Mayho, Sarah Peters, Simon Clare, Duncan J. Maskell, Pietro Mastroeni
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-5493-8

Genome-wide transcriptome analysis reveals the molecular mechanism of high temperature-induced floral abortion in Litchi chinensis
Cited by: 13
Author(s): Hao Líu, Congcong Wang, Houbin Chen, Biyan Zhou
Software Mentions: 1
Published: over 6 years ago

10.1128/IAI.00661-18

Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002
Cited by: 15
Author(s): Kelli Wuerth, Ahwon Lee, Reza Falsafi, Erin E. Gill, Robert E. W. Hancock
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-017-4400-4

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)
Cited by: 33
Author(s): Kisun Pokharel, Jaana Peippo, Mervi Honkatukia, Arja Seppälä, Johanna Rautiainen, Nasser Ghanem, Tuula-Marjatta Hamama, M.A. Crowe, Magnus Andersson, Menghua Li, Juha Kantanen
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.202012005

COCO/DAND5 inhibits developmental and pathological ocular angiogenesis
Cited by: 4
Author(s): Natalija Popović, Erika Hooker, A Barabino, Anthony Flamier, Frédéric Provost, Manuel Buscarlet, Gilbert Bernier, Bruno Larrivée
Software Mentions: 1
Published: over 4 years ago

10.15252/emmm.201707825

The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology
Cited by: 58
Author(s): Ana Martinez Hernandez, Hendrik Urbanke, Alan L. Gillman, Joon Lee, Sergey Ryazanov, Hope Yao Agbemenyah, Eva Benito, Gaurav Jain, Lalit Kaurani, Gayane Grigorian, Andrei Leonov, Nasrollah Rezaei‐Ghaleh, Petra Wilken, Fernando Terán Arce, Jens A. Wagner, Martin Fuhrman, Mario Caruana, Angelique Camilleri, Neville Vassallo, Markus Zweckstetter, Roland Benz, Armin Giese, Anja Schneider, Martin Körte, Ratnesh Lal, Christian Griesinger, Gregor Eichele, André Fischer
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201606743

<scp>ROCK</scp> signaling promotes collagen remodeling to facilitate invasive pancreatic ductal adenocarcinoma tumor cell growth
Cited by: 100
Author(s): Nicola Rath, Jennifer P. Morton, Linda Julian, Lena Helbig, Shereen Kadir, Ewan J. McGhee, Kurt I. Anderson, Gabriela Kalna, Margaret Mullin, Andreia V. Pinho, Ilse Rooman, Michael S. Samuel, Michael F. Olson
Software Mentions: 1
Published: over 8 years ago

10.3390/insects11020139

Transcriptomic Analysis of the Brown Planthopper, Nilaparvata lugens, at Different Stages after Metarhizium anisopliae Challenge
Cited by: 5
Author(s): Yifan Peng, Jifeng Tang, Jiaqin Xie
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-07177-7

Uterine transcriptome analysis reveals mRNA expression changes associated with the ultrastructure differences of eggshell in young and aged laying hens
Cited by: 12
Author(s): Jia Feng, Haijun Zhang, Shu‐geng Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 1
Published: over 4 years ago

10.3390/insects11030171

Transcriptome Analyses of Diaphorina citri Midgut Responses to Candidatus Liberibacter Asiaticus Infection
Cited by: 28
Author(s): Hai‐Zhong Yu, Ning‐Yan Li, Xiang-Dong Zeng, Jian-Chun Song, Yu Xj, Huanan Su, Ci-Xiang Chen, Long Yi, Zhanjun Lu
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201708184

Loss of kallikrein‐related peptidase 7 exacerbates amyloid pathology in Alzheimer's disease model mice
Cited by: 34
Author(s): Kiwami Kidana, Takuya Tatebe, Kaori Ito, Norikazu Hara, Akiyoshi Kakita, Takashi Saito, Sho Takatori, Yasuyoshi Ouchi, Takeshi Ikeuchi, Mitsuhiro Makino, Takaomi C. Saido, Masahiro Akishita, Takeshi Iwatsubo, Yukiko Hori, Taisuke Tomita
Software Mentions: 1
Published: over 7 years ago

10.3390/insects12030237

Regulation of Juvenile Hormone on Summer Diapause of Geleruca daurica and Its Pathway Analysis
Cited by: 32
Author(s): Hong-Yue Ma, Yanyan Li, Ling Li, Yao Tan, Bao-Ping Pang
Software Mentions: 1
Published: over 4 years ago

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