Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: DESeq2
https://packages.ecosyste.ms/registries/bioconductor.org/packages/DESeq2
Differential gene expression analysis based on the negative binomial distribution
2 versions
Latest release: 7 months ago
132 dependent packages
2,500,059 downloads total
Papers Mentioning DESeq2 9,583
10.1186/s12864-018-4471-x
Transcriptome analysis reveals mechanisms of geroprotective effects of fucoxanthin in DrosophilaCited by: 22
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Nadezhda Zemskaya, А. С. Белый, Eugenia Dobrovolskaya, Anna Patova, Zulfiya G. Guvatova, E. N. Lukyanova, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2019.00941
Deep Small RNA Sequencing of BRAF V600E Mutated Papillary Thyroid Carcinoma With Lymph Node MetastasisCited by: 2
Author(s): Azliana Mohamad Yusof, Rahman Jamal, Sazuita Saidin, Rohaizak Muhammad, Shahrun Niza Abdullah Suhaimi, Isa Mohamed Rose, Wan Fahmi Wan Mohamad Nazarie, Francis Tieng Yew Fu, Nurul Syakima Ab Mutalib
Software Mentions: 1
Published: over 4 years ago
10.1186/s40104-021-00546-6
Comprehensive evaluation of the metabolic effects of porcine CRTC3 overexpression on subcutaneous adipocytes with metabolomic and transcriptomic analysesCited by: 5
Author(s): J. Liu, Jie Li, Wentao Chen, Xintao Xie, Xingang Chu, Teresa G. Valencak, Yizhen Wang, Tizhong Shan
Software Mentions: 1
Published: about 3 years ago
10.1186/s40104-021-00574-2
Genetic basis of negative heterosis for growth traits in chickens revealed by genome-wide gene expression pattern analysisCited by: 11
Author(s): Chunning Mai, Chaoliang Wen, Zhi‐Yuan Xu, Guiyun Xu, Sirui Chen, Jiangxia Zheng, Chang Sun, Ning Yang
Software Mentions: 1
Published: about 3 years ago
10.3389/fgene.2020.00960
Prediction of Radiosensitivity in Head and Neck Squamous Cell Carcinoma Based on Multiple Omics DataCited by: 7
Author(s): Jie Liu, Mengmeng Han, Z.Q. Yue, Chao Dong, Pengbo Wen, Guoping Zhao, Lijun Wu, Junfeng Xia, Yannan Bin
Software Mentions: 1
Published: almost 4 years ago
10.1186/s40104-021-00611-0
Supplemental magnolol or honokiol attenuates adverse effects in broilers infected with Salmonella pullorum by modulating mucosal gene expression and the gut microbiotaCited by: 5
Author(s): Fang Chen, Hao Zhang, Encun Du, Qi-Wen Fan, Ning Zhao, Feng Jin, Wei Zhang, Wenjing Guo, Shaowen Huang, Jintao Wei
Software Mentions: 1
Published: almost 3 years ago
10.3389/fgene.2019.00299
A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal ChangesCited by: 46
Author(s): Marta Gòdia, Molly Estill, Anna Castelló, Sam Balasch, Joan E. Rodríguez‐Gil, Stephen A. Krawetz, Armand Sánchez, Alex Clop
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.617059
Algorithmic Annotation of Functional Roles for Components of 3,044 Human Molecular PathwaysCited by: 29
Author(s): Maxim Sorokin, Nicolas Borisov, Denis Kuzmin, Alexander Gudkov, Marianna Zolotovskaia, Andrew Garazha, Anton Buzdin
Software Mentions: 1
Published: over 3 years ago
10.3390/nu11040776
Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F1 MiceCited by: 15
Author(s): Bill J. Gurley, Isabelle R. Miousse, Intawat Nookaew, Laura Ewing, Charles M. Skinner, Piroon Jenjaroenpun, Thidathip Wongsurawat, Stefanie Kennon-McGill, Bharathi Avula, Ji Yeong Bae, Mitchell R. McGill, David W. Ussery, Ikhlas A. Khan, Igor Koturbash
Software Mentions: 1
Published: about 5 years ago
10.1590/1678-7757-2019-0578
The role of Candida albicans in root caries biofilms: an RNA-seq analysisCited by: 8
Author(s): Laís Daniela Ev, Nailê Damé‐Teixeira, Thuy Do, Marisa Maltz, Clarissa Cavalcanti Fatturi Parolo
Software Mentions: 1
Published: over 4 years ago
10.1002/jat.3358
Identification of microRNA biomarker candidates in urine and plasma from rats with kidney or liver damageCited by: 33
Author(s): Francis S. Wolenski, Priyal Shah, Tomoya Sano, Tadahiro Shinozawa, Hugues Bernard, Matt Gallacher, Shylah D. Wyllie, Georgianna Varrone, Lisa A. Cicia, Mary Carsillo, Craig D. Fisher, Sean Ottinger, Erik Koenig, Patrick J. Kirby
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-016-2384-0
Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cellsCited by: 30
Author(s): Alexandra Popa, Kévin Lebrigand, Pascal Barbry, Rainer Waldmann
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-020-6747-1
Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napusCited by: 29
Author(s): Mengdi Li, Ruihua Wang, Xiaoming Wu, Jianbo Wang
Software Mentions: 1
Published: about 4 years ago
10.1016/j.jaut.2019.102329
Increased adenosine-to-inosine RNA editing in rheumatoid arthritisCited by: 46
Author(s): Nikolaos I. Vlachogiannis, Aikaterini Gatsiou, Domenico Alessandro Silvestris, Kimon Stamatelopoulos, Maria G. Tektonidou, Angela Gallo, Petros P. Sfikakis, Konstantinos Stellos
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-021-08014-1
Female developmental environment delays development of male honeybee (Apis mellifera)Cited by: 1
Author(s): Yi Bo Liu, Yi Yao, Amal Abdelmawla, Yun Lin Zheng, Zhi Zeng
Software Mentions: 1
Published: over 2 years ago
10.1128/JB.00833-16
Assessment of Insertion Sequence Mobilization as an Adaptive Response to Oxidative Stress in Acinetobacter baumannii Using IS-seqCited by: 26
Author(s): Meredith S. Wright, Stephanie Mountain, Karen Beeri, Mark D. Adams
Software Mentions: 1
Published: about 7 years ago
10.1128/JB.00779-17
Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcaniiCited by: 38
Author(s): Diego Rivera Gelsinger, Jocelyne DiRuggiero
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2020.00449
A Panel of Plasma Exosomal miRNAs as Potential Biomarkers for Differential Diagnosis of Thyroid NodulesCited by: 33
Author(s): Meihua Liang, Su Jeong Yu, Shuli Tang, Lu Bai, Jianan Cheng, Yuanlong Gu, Shuang Li, Xin Zheng, Lian Duan, Liang Wang, Yanqiao Zhang, Xiaoyi Huang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-019-6221-0
Transcriptional insights into key genes and pathways controlling muscle lipid metabolism in broiler chickensCited by: 52
Author(s): Lu Liu, Xiaojing Liu, Huanxian Cui, Ranran Liu, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-020-07209-2
Changes in transcriptomic and metabolomic profiles of morphotypes of Ophiocordyceps sinensis within the hemocoel of its host larvae, Thitarodes xiaojinensisCited by: 9
Author(s): Miaomiao Li, Qian Meng, Huan Zhang, Ruihao Shu, Yanni Zhao, Peipei Wu, Xuan Li, Guiling Zhou, Qilian Qin, Jihong Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-5917-5
Transcriptional characterisation of the Exaiptasia pallida pedal discCited by: 10
Author(s): Peter A. Davey, Marcos Rodrigues, Jessica L. Clarke, Nick Aldred
Software Mentions: 1
Published: almost 5 years ago
10.1074/jbc.RA119.010764
Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniaeCited by: 18
Author(s): Lukas J. Troxler, Joel P. Werren, Thierry Oliver Schaffner, Nadezda Mostacci, Peter Vermathen, Martina Vermathen, Daniel Wüthrich, Cédric Simillion, Silvio D. Brugger, Rémy Bruggmann, Lucy J. Hathaway, Julien Furrer, Markus Hilty
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.594933
NETO2 Is Deregulated in Breast, Prostate, and Colorectal Cancer and Participates in Cellular SignalingCited by: 6
Author(s): Maria S. Fedorova, Anastasiya V. Snezhkina, Anastasiya V. Lipatova, Vladislav Pavlov, Anastasiya A. Kobelyatskaya, Zulfiya G. Guvatova, Elena A. Pudova, М. В. Савватеева, Irina A. Ishina, Т. Б. Демидова, Н. Н. Волченко, Trofimov D.Yu. Trofimov, Г. Т. Сухих, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.50223
Genome-wide CRISPR screening reveals genetic modifiers of mutant EGFR dependence in human NSCLCCited by: 23
Author(s): Hao Zeng, Johnny Castillo-Cabrera, Mika Manser, Bo Lü, Zinger Yang, Vaïk Strande, Damien Bégué, Raffaella Zamponi, Shumei Qiu, Frederic Sigoillot, Qiong Wang, Alicia Lindeman, John S. Reece‐Hoyes, Carsten Russ, Débora Bonenfant, Xiaomo Jiang, Youzhen Wang, Feng Cong
Software Mentions: 1
Published: over 4 years ago
10.1074/jbc.RA119.011842
The Parkinson's disease–associated kinase LRRK2 regulates genes required for cell adhesion, polarization, and chemotaxis in activated murine macrophagesCited by: 10
Author(s): Daniel Robert Siegfried Levy, Atul Udgata, Panagiotis Tourlomousis, Martyn F. Symmons, Lee Hopkins, Clare Bryant
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2021.643497
The Expression Profiles of mRNAs and lncRNAs in Buffalo Muscle Stem Cells Driving Myogenic DifferentiationCited by: 4
Author(s): Ruimen Zhang, Jinling Wang, Zhengzhong Xiao, Chao-Xia Zou, Qiang An, Hui Li, Xiaoqing Zhou, Zhuyue Wu, Deshun Shi, Yanfei Deng, Sufang Yang, Yanfei Wei
Software Mentions: 1
Published: almost 3 years ago
10.1074/jbc.RA120.015138
Coronavirus infection and PARP expression dysregulate the NAD metabolome: An actionable component of innate immunityCited by: 112
Author(s): Collin D. Heer, Daniel J. Sanderson, Lynden S Voth, Yousef M O Alhammad, Mark S. Schmidt, Samuel A.J. Trammell, Stanley Perlman, Michael S. Cohen, Anthony R. Fehr, Charles Brenner
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-020-07236-z
Initial response of ovarian tissue transcriptome to vitrification or microwave-assisted dehydration in the domestic cat modelCited by: 5
Author(s): Olga Amelkina, Pierre Comizzoli
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.677935
Neurogenesis Potential Evaluation and Transcriptome Analysis of Fetal Hypothalamic Neural Stem/Progenitor Cells With Prenatal High Estradiol ExposureCited by: 2
Author(s): Huihui Wang, Chuanpeng Zhou, Min Huang, He‐Feng Huang, Yun Sun
Software Mentions: 1
Published: almost 3 years ago
10.7554/eLife.55435
Cell and molecular transitions during efficient dedifferentiationCited by: 16
Author(s): John Me Nichols, Vlatka Antolović, Jacob D. Reich, Sophie Brameyer, Peggy Paschke, Jonathan R. Chubb
Software Mentions: 1
Published: about 4 years ago
10.1074/jbc.RA120.015452
Comparative interactomes of HSF1 in stress and disease reveal a role for CTCF in HSF1-mediated gene regulationCited by: 11
Author(s): Eileen T. Burchfiel, Anniina Vihervaara, Michael J. Guertin, Rocío Gómez-Pastor, Dennis J. Thiele
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-5967-8
Gene expression profile of human T cells following a single stimulation of peripheral blood mononuclear cells with anti-CD3 antibodiesCited by: 11
Author(s): Isabel Garcia Sousa, Kelly Cristina Rodrigues Simi, Manuela Maragno do Almo, Maryani Andressa Gomes Bezerra, Gero Doose, Tainá Raiol, Peter F. Stadler, Steve Hoffmann, Andréa Queiroz Maranhão, Marcelo M. Brigido
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-020-07034-7
Single cell transcriptomes reveal expression patterns of chemoreceptor genes in olfactory sensory neurons of the Caribbean spiny lobster, Panulirus argusCited by: 19
Author(s): Mihika T. Kozma, Hanh Ngo-Vu, Matthew T. Rump, Yuriy V. Bobkov, Barry W. Ache, Charles D. Derby
Software Mentions: 1
Published: over 3 years ago
10.1074/jbc.RA120.015402
A cell-nonautonomous mechanism of yeast chronological aging regulated by caloric restriction and one-carbon metabolismCited by: 18
Author(s): Elisa Enriquez-Hesles, Daniel L. Smith, Nazif Maqani, Margaret B. Wierman, Matthew D. Sutcliffe, Ryan D. Fine, Agata Kalita, Sean M. Santos, Michael J. Muehlbauer, James R. Bain, Kevin A. Janes, John L. Hartman, Matthew D. Hirschey, Jeffrey S. Smith
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-6352-3
Transcriptome and microbiome of coconut rhinoceros beetle (Oryctes rhinoceros) larvaeCited by: 24
Author(s): Matan Shelomi, Shih-Shun Lin, Liyu Liu
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-021-07605-2
Identification of the specific long-noncoding RNAs involved in night-break mediated flowering retardation in Chenopodium quinoaCited by: 5
Author(s): Qi Wu, Yiming Luo, Xiaoyong Wu, Xue Bai, Xueling Ye, Changying Liu, Yan Wan, Dabing Xiang, Qiang Li, Liang Zou, Gang Zhao
Software Mentions: 1
Published: about 3 years ago
10.3389/fgene.2020.00709
Gonadal Transcriptome Analysis of Sex-Related Genes in the Protandrous Yellowfin Seabream (Acanthopagrus latus)Cited by: 13
Author(s): Shi-Zhu Li, Genmei Lin, Wenyu Fang, Peilin Huang, Guang‐Hui Dong, Jing Huang, Jingui Xie, Jianguo Lü
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2020.00048
Analysis of Alternative Splicing and Alternative Polyadenylation in Populus alba var. pyramidalis by Single-Molecular Long-Read SequencingCited by: 17
Author(s): Hongbo Hu, Wenbo Yang, Zeyu Zheng, Zhimin Niu, Yongzhi Yang, Dongshi Wan, Jianquan Liu, Tao Ma
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00068
Transcriptomic Study of Porcine Small Intestine Epithelial Cells Reveals Important Genes and Pathways Associated With Susceptibility to Escherichia coli F4ac DiarrheaCited by: 8
Author(s): Serafino M. A. Augustino, Qiang Xu, Xueqin Liu, Lei Liu, Qin Zhang, Ying Yu
Software Mentions: 1
Published: about 4 years ago
10.1016/j.jbc.2021.100852
H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerveCited by: 4
Author(s): Phu Duong, Ki H., Raghu Ramesh, John J. Moran, Seongsik Won, John Svaren
Software Mentions: 1
Published: almost 3 years ago
10.3389/fgene.2021.651971
Immune System and Neuroinflammation in Idiopathic Parkinson’s Disease: Association Analysis of Genetic Variants and miRNAs InteractionsCited by: 8
Author(s): Claudia Strafella, Valerio Caputo, Andrea Termine, Francesca Assogna, Clelia Pellicano, Francesco E. Pontieri, Lucia Macchiusi, Giulietta Minozzi, Stefano Gambardella, Diego Centonze, Paola Bossù, Gianfranco Spalletta, Carlo Caltagirone, Emiliano Giardina, Raffaella Cascella
Software Mentions: 1
Published: almost 3 years ago
10.3389/fgene.2020.00604
Transcriptome Profiling of Pacu (Piaractus mesopotamicus) Challenged With Pathogenic Aeromonas hydrophila: Inference on Immune Gene ResponseCited by: 7
Author(s): Vito A. Mastrochirico-Filho, Milene Elissa Hata, Rafael Yutaka Kuradomi, Milena V. Freitas, Raquel B. Ariede, Daniel Guariz Pinheiro, Diego Robledo, Ross D. Houston, Diogo Teruo Hashimoto
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13036-019-0159-2
Systematic analysis of the effects of different nitrogen source and ICDH knockout on glycolate synthesis in Escherichia coliCited by: 8
Author(s): Kangjia Zhu, Guohui Li, Ren Wei, Yin Mao, Yang Zhao, Aiyong He, Zhonghu Bai, Yu Deng
Software Mentions: 1
Published: about 5 years ago
10.1186/s13036-019-0217-9
HMEJ-mediated efficient site-specific gene integration in chicken cellsCited by: 11
Author(s): Liang Xie, Juanjuan Sun, Lifen Mo, Tianpeng Xu, Qaisar Shahzad, Dongyang Chen, Wenhao Yang, Yuying Liao, Yangqing Lu
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00541
MicroRNA-mRNA Co-sequencing Identifies Transcriptional and Post-transcriptional Regulatory Networks Underlying Muscle Wasting in Cancer CachexiaCited by: 17
Author(s): Geysson Javier Fernández, Juarez Henrique Ferreira, Ivan J. Vechetti, Leonardo Nazário de Moraes, Sarah Santiloni Cury, Paula Paccielli Freire, Jayson Gutiérrez, Renato Ferretti, Maeli Dal-Pai-Silva, Sílvia Regina Rogatto, Robson Francisco Carvalho
Software Mentions: 1
Published: almost 4 years ago
10.1002/jbmr.4145
Exome Sequencing Reveals a Phenotype Modifying Variant in ZNF528 in Primary Osteoporosis With a COL1A2 DeletionCited by: 4
Author(s): Sini Skarp, Ji‐Han Xia, Qin Zhang, Marika Löija, Alice Costantini, Lloyd W. Ruddock, Outi Mäkitie, Gong‐Hong Wei, Minna Männikkö
Software Mentions: 1
Published: over 3 years ago
10.1002/jcsm.12255
Abstracts of the 10th International Conference on Cachexia, Sarcopenia and Muscle Wasting, Rome, Italy, 8-10 December 2017 (Part 1)Cited by: 2
Author(s):
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2019.00672
Comparative Transcriptomic and Proteomic Analyses Identify Key Genes Associated With Milk Fat Traits in Chinese Holstein CowsCited by: 13
Author(s): Chixing Zhou, Dan Shen, Cong Liu, Wentao Cai, Shuli Liu, Hongwei Yin, Shaolei Shi, Mengli Cao, Shengli Zhang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2020.00700
Characterizing Extracellular Vesicles and Their Diverse RNA ContentsCited by: 125
Author(s): Eren M. Veziroglu, George I. Mias
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-019-5668-3
Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elementsCited by: 15
Author(s): Alexandra A. Erwin, Justin P. Blumenstiel
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-019-5594-4
Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicidaCited by: 12
Author(s): Miriam Khider, Erik Hjerde, Hilde Hansen, Nils Peder Willassen
Software Mentions: 1
Published: about 5 years ago
10.7150/jca.46324
Systematic Analysis of the Clinical Relevance of Cell Division Cycle Associated Family in Endometrial CarcinomaCited by: 11
Author(s): Wenchao Zhang, Xiaofeng Qiu, Di Sun, Danye Zhang, Yue Qi, Xiao Li, Bing-Ying Liu, Juanjuan Liu, Bei Lin
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2021.644292
Deinococcus radiodurans UWO298 Dependence on Background Radiation for Optimal GrowthCited by: 7
Author(s): Hugo Castillo, Xiaoping Li, Geoffrey B. Smith
Software Mentions: 1
Published: about 3 years ago
10.3389/fgene.2021.594285
New Structural and Single Nucleotide Mutations in Type I and Type II Collagens in Taiwanese Children With Type I and Type II CollagenopathiesCited by: 0
Author(s): Meng‐Che Tsai, Yen-Yin Chou, Chia-Yi Li, Yi-Chieh Wang, Huang Yu, Chia‐Hsiang Chen, Peng Chen
Software Mentions: 1
Published: almost 3 years ago
10.3389/fgene.2017.00163
Identification and Characterization of MicroRNAs in the Goat (Capra hircus) Rumen during Embryonic DevelopmentCited by: 13
Author(s): Tao Zhong, Jiangtao Hu, Ping Xiao, Siyuan Zhan, Linjie Wang, Jiazhong Guo, Li Li, Hongping Zhang, Lili Niu
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2021.678194
Differentially Expressed MiRNAs of Goat Submandibular Glands Among Three Developmental Stages Are Involved in Immune FunctionsCited by: 5
Author(s): Aili Wang, Zhibin Ji, Rong Xuan, Xiaodong Zhao, Lei Hou, Qing Li, Yunpeng Chu, Tianle Chao, Jianmin Wang
Software Mentions: 1
Published: almost 3 years ago
10.3389/fgene.2020.00278
A Systematic Way to Infer the Regulation Relations of miRNAs on Target Genes and Critical miRNAs in CancersCited by: 35
Author(s): Peng Xu, Qian Wu, Jing Yu, Yongsheng Rao, Zheng Kou, Gang Fang, Xiaolong Shi, Wenbin Liu, Henry Han
Software Mentions: 1
Published: about 4 years ago
10.7150/jca.47292
TTC36 inactivation induce malignant properties via Wnt-β-catenin pathway in gastric carcinomaCited by: 9
Author(s): Lei Song, Xiaonong Guo, Fei Zhao, Wei Wang, Zhigang Zhao, Long Jin, Chengli Wu, Jiangchao Yao, Zhiyong Ma
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.728177
Updated Genome Assembly of Bighead Carp (Hypophthalmichthys nobilis) and Its Differences Between Male and Female on Genomic, Transcriptomic, and Methylation LevelCited by: 5
Author(s): Bishi Fu, Ying Zhou, Haiyang Liu, Xin Yu, Jingou Tong
Software Mentions: 1
Published: over 2 years ago
10.3389/fgene.2019.01360
Transcriptional Profiling Reveals the Regulatory Role of CXCL8 in Promoting Colorectal CancerCited by: 16
Author(s): Jie Li, Qin Liu, Xuan Huang, Yurui Cai, Song Li, Qianrong Xie, Fuchuan Liu, Xiaochun Chen, Peng Xu, Fanwei Zeng, Yanpeng Chu, Fanxin Zeng
Software Mentions: 1
Published: over 4 years ago
10.1111/acel.12825
A molecular signature for delayed graft functionCited by: 25
Author(s): Dagmara McGuinness, Suhaib Mohammed, Laura Monaghan, P. David Wilson, David Kingsmore, Oliver Shapter, Karen Stevenson, Shana M. Coley, Luke Devey, Robert B. Kirkpatrick, Paul G. Shiels
Software Mentions: 1
Published: almost 6 years ago
10.7150/jca.52286
Heterogeneity Analysis of Esophageal Squamous Cell Carcinoma in Cell Lines, Tumor Tissues and Patient-Derived XenograftsCited by: 12
Author(s): Fayang Ma, Kyle Vaughn Laster, Wenna Nie, Fangfang Liu, Dong Joon Kim, Mee-Hyun Lee, Ruihua Bai, Rendong Yang, Kangdong Liu, Zigang Dong
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00246
Identification of MicroRNAs and Their Targets That Respond to Powdery Mildew Infection in Cucumber by Small RNA and Degradome SequencingCited by: 13
Author(s): Xuewen Xu, Cailian Zhong, Min Keng Tan, Ya Kun Song, Xiaohua Qi, Qiang Xu, Xuehao Chen
Software Mentions: 1
Published: about 4 years ago
10.3389/fcell.2021.695545
TCF3 Regulates the Proliferation and Apoptosis of Human Spermatogonial Stem Cells by Targeting PODXLCited by: 7
Author(s): Dai Zhou, Jingyu Fan, Zhizhong Liu, Ruiling Tang, Xingming Wang, Hao Bo, Fang Zhu, Xueheng Zhao, Zeng-Hui Huang, Xing Liu, Ke Tao, Han Zhang, Hongchuan Nie, Huan Zhang, Wenbing Zhu, Zuping He, Liqing Fan
Software Mentions: 1
Published: almost 3 years ago
10.3389/fcell.2021.673765
Establishment of Repertoire of Placentome-Associated MicroRNAs and Their Appearance in Blood Plasma Could Identify Early Establishment of Pregnancy in Buffalo (Bubalus bubalis)Cited by: 2
Author(s): Parul Sarwalia, Mustafa Raza, Apoorva Soni, Pratiksha Dubey, Rajeev Chandel, Rakesh Kumar, A. Kumaresan, Suneel Kumar Onteru, Ankit Pal, Kalpana Singh, Mir Asif Iquebal, Sarika Jaiswal, Dinesh Kumar, Tirtha Kumar Datta
Software Mentions: 1
Published: over 2 years ago
10.7554/eLife.13325
Constitutive auxin response in Physcomitrella reveals complex interactions between Aux/IAA and ARF proteinsCited by: 113
Author(s): Meirav Lavy, Michael J. Prigge, Sibo Tao, Stephanie Shain, April Kuo, Kerstin Kirchsteiger, Mark Estelle
Software Mentions: 1
Published: almost 8 years ago
10.1083/jcb.201904148
Mitochondrial stress causes neuronal dysfunction via an ATF4-dependent increase in L-2-hydroxyglutarateCited by: 36
Author(s): Rachel J. Hunt, Lucy Granat, Gregory S. McElroy, Ramya Ranganathan, Navdeep S. Chandel, J.E. Bateman
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-015-1436-1
Endogenous siRNAs and piRNAs derived from transposable elements and genes in the malaria vector mosquito Anopheles gambiaeCited by: 32
Author(s): Inna Biryukova, Tao Ye
Software Mentions: 1
Published: about 9 years ago
10.3389/fcell.2021.640856
Phenotypic Robustness of Epidermal Stem Cell Number in C. elegans Is Modulated by the Activity of the Conserved N-acetyltransferase nath-10/NAT10Cited by: 7
Author(s): Mark Hintze, Dimitris Katsanos, Vahid Shahrezaei, Michalis Barkoulas
Software Mentions: 1
Published: about 3 years ago
10.3389/fcell.2020.604026
Rbm24a Is Necessary for Hair Cell Development Through Regulating mRNA Stability in ZebrafishCited by: 10
Author(s): Yan Zhang, Yanfei Wang, Xuebo Yao, Changquan Wang, Fangyi Chen, Dong Liu, Ming Shao, Zhigang Xu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-5125-8
Genome-wide transcriptome profiling of transgenic hop (Humulus lupulus L.) constitutively overexpressing HlWRKY1 and HlWDR1 transcription factorsCited by: 13
Author(s): Ajay Kumar Mishra, G Duraisamy, Manish Khare, Tomáš Kocábek, Jernej Jakše, J. Břı́za, Josef Patzak, Teruo Shimmen, J. Matoušek
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.54590
A new genetic strategy for targeting microglia in development and diseaseCited by: 83
Author(s): Gabriel L. McKinsey, Carlos O Lizama, Amber E Keown-Lang, Abraham Niu, Nicolás Santander, Amara Larpthaveesarp, Elin Chee, Fernando Gonzalez, Thomas D. Arnold
Software Mentions: 1
Published: almost 4 years ago
10.1111/jcmm.14328
Machine‐learning based radiogenomics analysis of <scp>MRI</scp> features and metagenes in glioblastoma multiforme patients with different survival timeCited by: 35
Author(s): Xin Liao, Bo Cai, Bin Tian, Yilin Luo, Sijian Wen, Yinglong Li
Software Mentions: 1
Published: about 5 years ago
10.1111/jcmm.14425
RDM1 promotes critical processes in breast cancer tumorigenesisCited by: 8
Author(s): Yajun Chen, Zhengwang Sun, Tianying Zhong
Software Mentions: 1
Published: almost 5 years ago
10.3389/fcell.2021.702462
Depletion of Demethylase KDM6 Enhances Early Neuroectoderm Commitment of Human PSCsCited by: 5
Author(s): Yajing Meng, Tianzhe Zhang, Ran Zheng, Song Ding, Jie Yang, Ran Liu, Yingan Jiang, Wei Jiang
Software Mentions: 1
Published: over 2 years ago
10.3389/fcell.2020.580367
YTHDF2 Regulates Maternal Transcriptome Degradation and Embryo Development in GoatCited by: 12
Author(s): Mingtian Deng, BaoBao Chen, Zifei Liu, Yu Cai, Yongjie Wan, Guomin Zhang, Yixuan Fan, Yanli Zhang
Software Mentions: 1
Published: over 3 years ago
10.1111/jcmm.15209
Ischaemic post‐conditioning in rats: Responder and non‐responder differ in transcriptome of mitochondrial proteinsCited by: 12
Author(s): Rolf Schreckenberg, Johann Klein, Hanna Sarah Kutsche, Rainer Schulz, Kamilla Gömöri, Péter Bencsik, Bettina Benczik, Bence Ágg, Éva Sághy, Péter Ferdinándy, Klaus‐Dieter Schlüter
Software Mentions: 1
Published: about 4 years ago
10.1111/jcmm.15335
Hypomethylation of PRDM1 is associated with recurrent pregnancy lossCited by: 7
Author(s): Guizhen Du, Mingming Yu, Qiaoqiao Xu, Zhenyao Huang, Xiaomin Huang, Lei Han, Yun Fan, Yan Zhang, Ruohan Wang, Shanshan Xu, Xiumei Han, Guangbo Fu, Shuyan Lv, Yufeng Qin, Xinru Wang, Chuncheng Lu, Yankai Xia
Software Mentions: 1
Published: about 4 years ago
10.3389/fcell.2021.644346
Bhlhe40/Sirt1 Axis-Regulated Mitophagy Is Implicated in All-Trans Retinoic Acid-Induced Spina Bifida ApertaCited by: 6
Author(s): Lu Zhao, Dan Liú, Wei Ma, Hui Gu, Xiaowei Wei, Wenting Luo, Zhengwei Yuan
Software Mentions: 1
Published: about 3 years ago
10.3389/fcell.2021.724310
Transcriptome Analysis Reveals an Inhibitory Effect of Dihydrotestosterone-Treated 2D- and 3D-Cultured Dermal Papilla Cells on Hair Follicle GrowthCited by: 6
Author(s): Yufan Zhang, Junfei Huang, Danlan Fu, Zhen Liu, Hailin Wang, Jin Wang, Qian Qu, Kaitao Li, Zhexiang Fan, Yong Miao
Software Mentions: 1
Published: over 2 years ago
10.3389/fcell.2020.585879
RAD-Deficient Human Cardiomyocytes Develop Hypertrophic Cardiomyopathy Phenotypes Due to Calcium DysregulationCited by: 7
Author(s): Yanan Li, Yun Chang, Xiaolei Li, Xiaowei Li, Jian Gao, Yuanyuan Zhou, Fujian Wu, Rui Bai, Tao Dong, Shuhong Ma, Siyao Zhang, Wenjing Lü, Xiaoqiu Tan, Yongming Wang, Feng Lan
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-6264-2
Spatial organization of endometrial gene expression at the onset of embryo attachment in pigsCited by: 22
Author(s): Shuqin Zeng, Susanne E. Ulbrich, Stefan Bauersachs
Software Mentions: 1
Published: over 4 years ago