bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.623738

TULP2, a New RNA-Binding Protein, Is Required for Mouse Spermatid Differentiation and Male Fertility
Cited by: 10
Author(s): Meimei Zheng, Chen Xu, Yiqiang Cui, Wen Li, Haiqian Dai, Qiuling Yue, Hao Zhang, Zheng Ying, Xuejiang Guo, Hui Zhu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.695007

Aberrant Expression of Circulating MicroRNA Leads to the Dysregulation of Alpha-Synuclein and Other Pathogenic Genes in Parkinson’s Disease
Cited by: 15
Author(s): Meng Cai, Songshan Chai, Tao Xiong, Jun Wei, Weibing Mao, Yasha Zhu, Xiang Li, Wei Wei, Xuan Dai, Bangkun Yang, Wen Li, Bing Shu, Mengyang Wang, Taojunjin Lu, Yuankun Cai, Zhixin Zheng, Zhimin Mei, Yixuan Zhou, Jingyi Yang, J. W. Zhao, Lei Shen, Joshua W. K. Ho, Jincao Chen, Nanxiang Xiong
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.03201

Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
Cited by: 18
Author(s): Lisa Franziska Bischof, M. Florencia Haurat, Lena Hoffmann, Andreas Albersmeier, Jacqueline Wolf, Astrid Neu, Trong Khoa Pham, Stefan P. Albaum, Tobias Jakobi, Stefan Schouten, Meina Neumann‐Schaal, Phillip C. Wright, Jörn Kalinowski, Bettina Siebers, Sonja Albers
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcell.2020.571677

Epidermal Growth Factor Is Essential for the Maintenance of Novel Prostate Epithelial Cells Isolated From Patient-Derived Organoids
Cited by: 12
Author(s): Katia Cheaito, Hisham F. Bahmad, Hiba A. Jalloul, Ola Hadadeh, Hiba Msheik, Albert El Hajj, Deborah Mukherji, Mohamed Al-Sayegh, Wassim Abou-Kheir
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-017-4400-4

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)
Cited by: 33
Author(s): Kisun Pokharel, Jaana Peippo, Mervi Honkatukia, Arja Seppälä, Johanna Rautiainen, Nasser Ghanem, Tuula-Marjatta Hamama, M.A. Crowe, Magnus Andersson, Menghua Li, Juha Kantanen
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcell.2021.672406

Stepwise Induction of Inner Ear Hair Cells From Mouse Embryonic Fibroblasts via Mesenchymal- to-Epithelial Transition and Formation of Otic Epithelial Cells
Cited by: 2
Author(s): Qiong Yang, Haibo Shi, Yizhou Quan, Qianqian Chen, Wang Li, Li Wang, Yonghui Wang, Zhongzhong Ji, Shankai Yin, Huiming Xu, Wei‐Qiang Gao
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.720858

A Model of Waardenburg Syndrome Using Patient-Derived iPSCs With a SOX10 Mutation Displays Compromised Maturation and Function of the Neural Crest That Involves Inner Ear Development
Cited by: 8
Author(s): Jie Wen, Jian Song, Yijiang Bai, Yalan Liu, Xinzhang Cai, Lingyun Mei, Lu Ma, Chufeng He, Yong Feng
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.619538

Conditional Loss of BAF (mSWI/SNF) Scaffolding Subunits Affects Specification and Proliferation of Oligodendrocyte Precursors in Developing Mouse Forebrain
Cited by: 5
Author(s): Eman Abbas, Mohamed A. Hassan, Godwin Sokpor, Kamila A. Kiszka, Linh Pham, Cemil Kerimoğlu, André Fischer, Huu Phuc Nguyen, Jochen F. Staiger, Tran Tuoc
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.661122

LECT 2 Antagonizes FOXM1 Signaling via Inhibiting MET to Retard PDAC Progression
Cited by: 2
Author(s): Xin Li, Pingping Lin, Ye Tao, Xin Jiang, Ting Li, Yunshan Wang, Chenjing Wang, Yu Cao
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02558

Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates
Cited by: 99
Author(s): Emmanuelle H. Crost, Gwénaëlle Le Gall, Jenny A. Laverde-Gomez, Indrani Mukhopadhya, Harry J. Flint, Nathalie Juge
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2020.563607

Cytomegalovirus Generates Assembly Compartment in the Early Phase of Infection by Perturbation of Host-Cell Factors Recruitment at the Early Endosome/Endosomal Recycling Compartment/Trans-Golgi Interface
Cited by: 12
Author(s): Pero Lučin, Natalia Jug Vučko, Ljerka Karleuša, Hana Mahmutefendić Lučin, Gordana Blagojević Zagorac, Berislav Lisnić, Valentino Pavišić, Marina Marcelić, Kristina Grabušić, Ilija Brizić, Silvija Lukanović Jurić
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.622539

Human Wharton’s Jelly Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles Drive Oligodendroglial Maturation by Restraining MAPK/ERK and Notch Signaling Pathways
Cited by: 10
Author(s): Marianne Joerger-Messerli, Gierin Florence Thomi, Valérie Haesler, Irene Keller, Patricia Renz, Daniel Surbek, Andreina Schoeberlein
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.556064

Transcriptomic and Phenotypic Analysis of a spoIIE Mutant in Clostridium beijerinckii
Cited by: 7
Author(s): Mamou Diallo, Nicolas Kint, Marc Monot, Florent Collas, Isabelle Martin‐Verstraete, John van der Oost, S.W.M. Kengen, Ana M. López-Contreras
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.718487

Resource Allocation During the Transition to Diazotrophy in Klebsiella oxytoca
Cited by: 5
Author(s): Christopher Waite, Anya Lindström Battle, Mark H. Bennett, Matthew Carey, Chun K Hong, Ioly Kotta‐Loizou, Martin Buck, Julia Schumacher
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.609090

Blockade of Macrophage CD147 Protects Against Foam Cell Formation in Atherosclerosis
Cited by: 3
Author(s): Jianjun Lv, Hao Wang, Hong‐Yong Cui, Ze-Kun Liu, Renyu Zhang, Ling Meng, Can Li, Yu‐Le Yong, Man Liu, Hai Zhang, Tianjiao Zhang, Kun Zhang, Gang Li, Gang Nan, Cong Zhang, Shuangping Guo, Ling Wang, Zhi‐Nan Chen, Huijie Bian
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.567610

Impact of Sustained Transforming Growth Factor-β Receptor Inhibition on Chromatin Accessibility and Gene Expression in Cultured Human Endometrial MSC
Cited by: 15
Author(s): Raffaella Lucciola, Pavle Vrljicak, Shanti Gurung, Caitlin E. Filby, Saeedeh Darzi, Joanne Muter, Sascha Ott, Jan J. Brosens, Caroline E. Gargett
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.685261

Transcriptome Profiling of Mouse Corpus Callosum After Cerebral Hypoperfusion
Cited by: 3
Author(s): Hajime Takase, Gen Hamanaka, Ryo Ohtomo, Hidehiro Ishikawa, Kelly K. Chung, Emiri T. Mandeville, Josephine Lok, Myriam Fornage, Karl Herrup, Kai Hei Tse, Eng H. Lo, Ken Arai
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.46703

A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes
Cited by: 21
Author(s): Joo Lee, Christina Taylor, Kristopher M. Barnes, Ao Shen, Emerson V. Stewart, Allison Chen, Yang Xiang, Zhejing Bao, Kang Shen
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-07177-7

Uterine transcriptome analysis reveals mRNA expression changes associated with the ultrastructure differences of eggshell in young and aged laying hens
Cited by: 12
Author(s): Jia Feng, Haijun Zhang, Shu‐geng Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.654397

The Scleraxis Transcription Factor Directly Regulates Multiple Distinct Molecular and Cellular Processes During Early Tendon Cell Differentiation
Cited by: 11
Author(s): Han Liu, Jingyue Xu, Yu Lan, Hee‐Woong Lim, Rulang Jiang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.621578

Identification of Key Histone Modifications and Their Regulatory Regions on Gene Expression Level Changes in Chronic Myelogenous Leukemia
Cited by: 6
Author(s): Lu-Qiang Zhang, Guoliang Fan, Jun-Jie Liu, Li Liu, Qian‐Zhong Li, Hao Lin
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcvm.2021.639361

Pro-inflammatory Monocyte Phenotype During Acute Progression of Cerebral Small Vessel Disease
Cited by: 6
Author(s): Marlies P. Noz, Annemieke ter Telgte, Kim Wiegertjes, Anil M. Tuladhar, Charlotte Kaffa, Simone Kersten, Siroon Bekkering, Charlotte D C C van der Heijden, Alexander Hoischen, Leo A. B. Joosten, Mihai G. Netea, Marco Duering, Frank–Erik de Leeuw, Niels P. Riksen
Software Mentions: 1
Published: over 5 years ago

10.3389/fcvm.2021.737826

microRNA-377 Signaling Modulates Anticancer Drug-Induced Cardiotoxicity in Mice
Cited by: 4
Author(s): John Henderson, Praveen Dubey, Mallikarjun Patil, Sarojini Singh, Shubham Dubey, Rajasekaran Namakkal Soorappan, Ramaswamy Kannappan, Palaniappan Sethu, Gangjian Qin, Jianyi Zhang, Prasanna Krishnamurthy
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1247-4

H2A.Z marks antisense promoters and has positive effects on antisense transcript levels in budding yeast
Cited by: 19
Author(s): Muxin Gu, Yanin Naiyachit, Thomas J. Wood, Catherine B. Millar
Software Mentions: 1
Published: over 11 years ago

10.3390/ani11030834

Characterization and Comparative Transcriptomic Analysis of Skeletal Muscle in Pekin Duck at Different Growth Stages Using RNA-Seq
Cited by: 7
Author(s): Zhigang Hu, Junting Cao, Liyan Ge, Jianqin Zhang, Huilin Zhang, Xiaolin Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcvm.2021.664044

Uncovering Potential lncRNAs and mRNAs in the Progression From Acute Myocardial Infarction to Myocardial Fibrosis to Heart Failure
Cited by: 9
Author(s): Shuo Wang, Enmao Wang, Qincong Chen, Yan Yang, Lei Xu, Xiaolei Zhang, Rubing Wu, Xitian Hu, Zhihong Wu
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.00392

Exploring the Role of SRC in Extraocular Muscle Fibrosis of the Graves’ Ophthalmopathy
Cited by: 3
Author(s): Mingyu Hao, Jingxue Sun, Yaguang Zhang, Dexin Zhang, Jun Han, Jirong Zhang, Hong Qiao
Software Mentions: 1
Published: over 6 years ago

10.1186/s40793-019-0344-4

Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils
Cited by: 11
Author(s): Jana Voříšková, Bo Elberling, Anders Priemé
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.02829

A Similar Secretome Disturbance as a Hallmark of Non-pathogenic Botrytis cinerea ATMT-Mutants?
Cited by: 15
Author(s): Amélie de Vallée, Pascal Bally, Christophe Bruel, Lucie Chandat, Mathias Choquer, Cindy Dieryckx, Jean-William Dupuy, Sophie Kaiser, Marie‐Pascale Latorse, Elise Loisel, Géraldine Mey, Georges Morgant, Christine Rascle, Julia Schumacher, Adeline Simon, Eytham Souibgui, Muriel Viaud, François Villalba, Nathalie Poussereau
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.01602

Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet
Cited by: 36
Author(s): Ruirui Wang, Hui Li, Xin Yang, Xinhe Xue, Liman Deng, Jian Shen, Menghui Zhang, Liping Zhao, Chenhong Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-4361-7

Training the salmon’s genes: influence of aerobic exercise, swimming performance and selection on gene expression in Atlantic salmon
Cited by: 12
Author(s): Nick Robinson, Gerrit Timmerhaus, Matthew Baranski, Øivind Andersen, Harald Takle, Aleksei Krasnov
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12199-019-0840-6

Transcriptome analysis of the hippocampus in environmental noise-exposed SAMP8 mice reveals regulatory pathways associated with Alzheimer’s disease neuropathology
Cited by: 10
Author(s): Donghong Su, Wenlong Li, Huimin Chi, Honglian Yang, Xiaojun She, Kun Wang, Xiujie Gao, Kefeng Ma, Ming Zhang, Bo Cui
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12940-019-0535-x

Transcriptome-wide analysis of changes in the fetal placenta associated with prenatal arsenic exposure in the New Hampshire Birth Cohort Study
Cited by: 19
Author(s): Emily F. Winterbottom, Yuguang Ban, Xiaodian Sun, Anthony J. Capobianco, Carmen J. Marsit, Xi Chen, Lily Wang, Margaret R. Karagas, David J. Robbins
Software Mentions: 1
Published: almost 7 years ago

10.1530/ERC-18-0134

Oncometabolite induced primary cilia loss in pheochromocytoma
Cited by: 7
Author(s): Samuel O'Toole, David S. Watson, Tatiana Novoselova, Lisa E.L. Romano, Peter King, Teisha Y. Bradshaw, Claire Thompson, Martin M. Knight, Tyson V. Sharp, Michael R. Barnes, Umasuthan Srirangalingam, William M Drake, J. Paul Chapple
Software Mentions: 1
Published: almost 8 years ago

10.1080/22221751.2019.1700762

Transcriptional response to metal starvation in the emerging pathogen Mycoplasma genitalium is mediated by Fur-dependent and –independent regulatory pathways
Cited by: 6
Author(s): Carlos Martínez-Torró, Sergi Torres-Puig, Marta Monge, Lucía Sánchez-Alba, Miguel González-Martín, Marina Marcos-Silva, Alex Perálvarez‐Marín, Françesc Canals, Enrique Querol, Jaume Piñol, Óscar Q. Pich
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.7966

Extensive alternative splicing triggered by mitonuclear mismatch in naturally introgressed Rhinolophus bats
Cited by: 2
Author(s): Wenli Chen, Xiuguang Mao
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.65234

A non-genetic, cell cycle-dependent mechanism of platinum resistance in lung adenocarcinoma
Cited by: 13
Author(s): Álvaro González-Rajal, Kamila A. Marzec, Rachael A. McCloy, Max Nobis, Venessa T. Chin, Jordan F. Hastings, Kaitao Lai, Marina Kennerson, William E. Hughes, Vijesh Vaghjiani, Paul Timpson, Jason E. Cain, D. Neil Watkins, David R. Croucher, Andrew Burgess
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.5100

The harmful algae,Cochlodinium polykrikoidesandAureococcus anophagefferens, elicit stronger transcriptomic and mortality response in larval bivalves (Argopecten irradians) than climate change stressors
Cited by: 7
Author(s): Andrew W. Griffith, Matthew J. Harke, Elizabeth DePasquale, Dianna L. Berry, Christopher J. Gobler
Software Mentions: 1
Published: over 7 years ago

10.1098/rsob.160012

Acute stress is detrimental to heart regeneration in zebrafish
Cited by: 46
Author(s): Pauline Sallin, Anna Jaźwińska
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2018.02251

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains
Cited by: 10
Author(s): Sarah Farhat, Isabelle Florent, Benjamin Noël, Ehsan Kayal, Corinne Da Silva, Estelle Bigeard, Adriana Alberti, Karine Labadie, Erwan Corre, Jean‐Marc Aury, Stéphane Rombauts, Patrick Wincker, Laure Guillou, Betina M. Porcel
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.628269

Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra
Cited by: 23
Author(s): Stefanie A. Hetz, Marcus A. Horn
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.557180

Distinct Changes Occur in the Human Breast Milk Microbiome Between Early and Established Lactation in Breastfeeding Guatemalan Mothers
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Chen Li, Lilian Lopez Leyva, Noel W. Solomons, Luis B. Agellon, Marilyn Scott, Kristine G. Koski
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.591926

GapB Is Involved in Biofilm Formation Dependent on LrgAB but Not the SinI/R System in Bacillus cereus 0-9
Cited by: 6
Author(s): Juanmei Zhang, Meng Li, Yubing Zhang, Lidan Sang, Qing Liu, Linlin Zhao, Fengying Liu, Gang Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.02114

Analysis of Microbiome Data in the Presence of Excess Zeros
Cited by: 191
Author(s): Abhishek Kaul, Siddhartha Mandal, Ori Davidov, Shyamal D. Peddada
Software Mentions: 1
Published: about 9 years ago

10.1002/ece3.5413

Gene expression correlates of facultative predation in the blow flyChrysomya rufifacies(Diptera: Calliphoridae)
Cited by: 6
Author(s): Meaghan L. Pimsler, Sing‐Hoi Sze, Sunday Saenz, Shuhua Fu, Jeffery K. Tomberlin, Aaron M. Tarone
Software Mentions: 1
Published: over 7 years ago

10.1002/ece3.5563

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO2 vent
Cited by: 16
Author(s): Sven Uthicke, Nandan P. Deshpande, Michelle Liddy, Frances Patel, Miles D. Lamare, Marc R. Wilkins
Software Mentions: 1
Published: about 7 years ago

10.15252/embr.201948354

A distinct metabolic state arises during the emergence of 2‐cell‐like cells
Cited by: 34
Author(s): Diego Rodriguez-Terrones, Götz Hartleben, Xavier Gaume, André Eid, Manuel Guthmann, Ane Iturbide, Maria-Elena Torres-Padilla
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.604485

More Than a Methanotroph: A Broader Substrate Spectrum for Methylacidiphilum fumariolicum SolV
Cited by: 18
Author(s): Nunzia Picone, Sepehr S. Mohammadi, Annemiek C. Waajen, Theo A. van Alen, Mike S. M. Jetten, Arjan Pol, Huub J. M. Op den Camp
Software Mentions: 1
Published: almost 6 years ago

10.15252/embr.201949583

Lipoic acid rejuvenates aged intestinal stem cells by preventing age‐associated endosome reduction
Cited by: 22
Author(s): Gang Du, Yicheng Qiao, Zhangpeng Zhuo, Jiaqi Zhou, Xiaorong Li, Zhiming Liu, Li Yang, Haiyang Chen
Software Mentions: 1
Published: over 6 years ago

10.1002/advs.202004507

Hypermethylation of Hepatic Mitochondrial ND6 Provokes Systemic Insulin Resistance
Cited by: 19
Author(s): Ke Cao, Weiqiang Lv, Xueqiang Wang, Shanshan Dong, Xuyun Liu, Tie‐Lin Yang, Jie Xu, Mengqi Zeng, Xuan Zou, Daina Zhao, Qingqing Ma, Ming Tsan Lin, Long Jiang, Weijin Zang, Feng Gao, Zhihui Feng, Jiankang Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01592

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus
Cited by: 1
Author(s): Frances Diana Pitt, Andrew Millard, Martin Ostrowski, Suat Dervish, Sophie Mazard, Ian T. Paulsen, Mikhail V. Zubkov, David J. Scanlan
Software Mentions: 1
Published: about 10 years ago

10.15252/embr.201948789

Non‐apoptotic TRAIL function modulates NK cell activity during viral infection
Cited by: 11
Author(s): Ludmila Cardoso Alves, Michael Berger, Θεόδωρος Κουτσανδρέας, Nick Kirschke, Christoph Lauer, Roman Spörri, Aristotelis Chatziioannou, Nadia Corazza, Philippe Krebs
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.590325

A Cross-Sectional Study of Dairy Cattle Metagenomes Reveals Increased Antimicrobial Resistance in Animals Farmed in a Heavy Metal Contaminated Environment
Cited by: 12
Author(s): Natália Carrillo Gaeta, Emily Bean, Asha M. Miles, Daniel Ubriaco Oliveira Gonçalves de Carvalho, Mario Augusto Reyes Alemán, Jeferson Silva Carvalho, Lílian Gregory, Erika Ganda
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02769

Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum
Cited by: 7
Author(s): Matthias Ruwe, Marcus Persicke, Tobias Busche, Benjamin Müller, Joern Kalinowski
Software Mentions: 1
Published: almost 7 years ago

10.15252/emmm.202012005

COCO/DAND5 inhibits developmental and pathological ocular angiogenesis
Cited by: 4
Author(s): Natalija Popović, Erika Hooker, A Barabino, Anthony Flamier, Frédéric Provost, Manuel Buscarlet, Gilbert Bernier, Bruno Larrivée
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201707825

The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology
Cited by: 58
Author(s): Ana Martinez Hernandez, Hendrik Urbanke, Alan L. Gillman, Joon Lee, Sergey Ryazanov, Hope Yao Agbemenyah, Eva Benito, Gaurav Jain, Lalit Kaurani, Gayane Grigorian, Andrei Leonov, Nasrollah Rezaei‐Ghaleh, Petra Wilken, Fernando Terán Arce, Jens A. Wagner, Martin Fuhrman, Mario Caruana, Angelique Camilleri, Neville Vassallo, Markus Zweckstetter, Roland Benz, Armin Giese, Anja Schneider, Martin Körte, Ratnesh Lal, Christian Griesinger, Gregor Eichele, André Fischer
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.60939

Reprogramming of bone marrow myeloid progenitor cells in patients with severe coronary artery disease
Cited by: 19
Author(s): Marlies P. Noz, Siroon Bekkering, Laszlo Groh, Tim Mj Nielen, E. J. P. Lamfers, Andreas Schlitzer, Saloua El Messaoudi, Niels van Royen, Erik Huys, Frank Preijers, E. Smeets, Erik H.J.G. Aarntzen, Bowen Zhang, Li Yang, M.E.J. Bremmers, W.J. van der Velden, Harry Dolstra, Leo A. B. Joosten, Marc E. Gomes, Mihai G. Netea, Niels P. Riksen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.532447

Impact of Ocean Warming and Acidification on Symbiosis Establishment and Gene Expression Profiles in Recruits of Reef Coral Acropora intermedia
Cited by: 10
Author(s): Yuhan Sun, Lei Jiang, Sanqiang Gong, Ming Guo, Xiangcheng Yuan, Guowei Zhou, Xinming Lei, Yuyang Zhang, Tao Yuan, Lian Ji, Pei‐Yuan Qian, Hui Huang
Software Mentions: 1
Published: about 6 years ago

10.15252/emmm.201606743

<scp>ROCK</scp> signaling promotes collagen remodeling to facilitate invasive pancreatic ductal adenocarcinoma tumor cell growth
Cited by: 100
Author(s): Nicola Rath, Jennifer P. Morton, Linda Julian, Lena Helbig, Shereen Kadir, Ewan J. McGhee, Kurt I. Anderson, Gabriela Kalna, Margaret Mullin, Andreia V. Pinho, Ilse Rooman, Michael S. Samuel, Michael F. Olson
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2016.00175

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis
Cited by: 60
Author(s): Lílian dos Santos Castro, Renato Graciano de Paula, Amanda Cristina Campos Antoniêto, Gabriela Félix Persinoti, Rafael Silva‐Rocha, Roberto do Nascimento Silva
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-019-6408-4

Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
Cited by: 11
Author(s): Jin-Hyoung Kim, Daniel J. Macqueen, James R. Winton, John D. Hansen, Hyun Park, Robert H. Devlin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-017-3741-3

Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection
Cited by: 43
Author(s): Rune Andreassen, Nardos Tesfaye Woldemariam, Ine Østråt Egeland, Oleg Agafonov, Hilde Sindre, Bjørn Høyheim
Software Mentions: 1
Published: over 9 years ago

10.1098/rsob.160293

Peripheral self-reactivity regulates antigen-specific CD8 T-cell responses and cell division under physiological conditions
Cited by: 6
Author(s): Lee Kim Swee, Zhen Tan, Anna Smerdel-Ramoya, Norimasa Yoshida, Harshil Patel, Gijsbert M. Grotenbreg, Eva‐Maria Frickel, Hidde L. Ploegh
Software Mentions: 1
Published: about 10 years ago

10.15252/emmm.201708184

Loss of kallikrein‐related peptidase 7 exacerbates amyloid pathology in Alzheimer's disease model mice
Cited by: 34
Author(s): Kiwami Kidana, Takuya Tatebe, Kaori Ito, Norikazu Hara, Akiyoshi Kakita, Takashi Saito, Sho Takatori, Yasuyoshi Ouchi, Takeshi Ikeuchi, Mitsuhiro Makino, Takaomi C. Saido, Masahiro Akishita, Takeshi Iwatsubo, Yukiko Hori, Taisuke Tomita
Software Mentions: 1
Published: almost 9 years ago

10.1080/21623945.2020.1859789

Mouse Embryonic Fibroblast Adipogenic Potential: A Comprehensive Transcriptome Analysis
Cited by: 6
Author(s): Mohamed Al-Sayegh, Hamad Ali, Mohammad H. Jamal, Mei ElGindi, Tina Chanyong, Khulood Al-Awadi, Mohamed Abu‐Farha
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.42068

Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage
Cited by: 18
Author(s): Angela Schulz, Nicola Victoria Müller, Nina A. van de Lest, Andreas Eisenreich, Martina Schmidbauer, Andrei Barysenka, Bettina Purfürst, Anje Sporbert, Theodor Lorenzen, Alexander M Meyer, Laura Herlan, Anika Witten, Frank Rühle, Weibin Zhou, Emile de Heer, Marion Scharpfenecker, Daniela Panáková, Monika Stoll, Reinhold Kreutz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-06855-w

Transcriptomic and proteomic analyses of ovarian follicles reveal the role of VLDLR in chicken follicle selection
Cited by: 23
Author(s): Qiuyue Chen, Yiya Wang, Zemin Liu, Xiaoli Guo, Yuena Sun, Kang Li, Yunliang Jiang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-018-4481-8

Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation
Cited by: 20
Author(s): Manuel Wittchen, Tobias Busche, Andrew H. Gaspar, Ju Huck Lee, Hung Ton‐That, Jörn Kalinowski, Andreas Tauch
Software Mentions: 1
Published: almost 9 years ago

10.15252/emmm.202012088

BAM15‐mediated mitochondrial uncoupling protects against obesity and improves glycemic control
Cited by: 41
Author(s): Christopher L. Axelrod, W. T. King, Gangarao Davuluri, Robert C. Noland, J.Denny Hall, Michaela Hull, Wagner Silva Dantas, Elizabeth R. M. Zunica, Stephanie J. Alexopoulos, Kyle L. Hoehn, Ingeborg M. Langohr, Krisztián Stadler, Haylee Doyle, Éva Schmidt, Stephan Nieuwoudt, Kelly Fitzgerald, Kathryn Pergola, Hisashi Fujioka, Jacob T. Mey, Ciarán E. Fealy, Anny Mulya, Robbie A. Beyl, Charles L. Hoppel, John P. Kirwan
Software Mentions: 1
Published: over 6 years ago

10.15252/emmm.202013144

Upfront admixing antibodies and EGFR inhibitors preempts sequential treatments in lung cancer models
Cited by: 13
Author(s): Ilaria Marrocco, Donatella Romaniello, Ilan Vaknin, Diana Drago-García, Roni Oren, Mary Luz Uribe, Nishanth Belugali Nataraj, Soma Ghosh, Raya Eilam, Tomer-Meir Salame, Moshit Lindzen, Yosef Yarden
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2020.106123

Transcriptomic dataset of wild type and phoP mutant Pectobacterium versatile
Cited by: 2
Author(s): Natalia Gogoleva, Uljana Kravchenko, Yevgeny Nikolaichik, Alexander A. Kamnev
Software Mentions: 1
Published: about 6 years ago

10.1016/j.dib.2021.106726

RNA sequencing data for heat stress response in isolated medicago truncatula seed tissues
Cited by: 3
Author(s): Zhijuan Chen, Benoît Ly Vu, Olivier Leprince, Jérôme Verdier
Software Mentions: 1
Published: over 5 years ago

10.3390/curroncol28040245

The Sex Differences in Uveal Melanoma: Potential Roles of EIF1AX, Immune Response and Redox Regulation
Cited by: 5
Author(s): Feng Liu‐Smith, Chi‐Yang Chiu, Daniel L. Johnson, P. Winston Miller, Evan S. Glazer, Zhao-Hui Wu, Matthew W. Wilson
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00744

Genomic and Transcriptomic Study for Screening Genes Involved in the Limonene Biotransformation of Penicillium digitatum DSM 62840
Cited by: 10
Author(s): Lulu Zhang, Wen Huang, Yingying Zhang, Gang Fan, Jin He, Jianmin Ren, Zhi Li, Xiao Li, Siyi Pan
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cub.2020.07.055

HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella
Cited by: 4
Author(s): Yang Dong, Mateusz Majda, Jan Šimura, Róbert Horváth, Anjil Kumar Srivastava, Łukasz Łangowski, Tilly Eldridge, Nicola Stacey, Tanja Slotte, Ari Sadanandom, Karin Ljung, Richard S. Smith, Lars Østergaard
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cub.2020.09.066

Two MicroRNAs Are Sufficient for Embryonic Patterning in C. elegans
Cited by: 14
Author(s): Philipp J Dexheimer, Jingkui Wang, Luisa Cochella
Software Mentions: 1
Published: almost 6 years ago

10.7759/cureus.7014

Dissecting the Molecular Signature of Spinal Cord Regeneration in the Axolotl Model
Cited by: 4
Author(s): Turan Demircan
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.43570

Guy1, a Y-linked embryonic signal, regulates dosage compensation in Anopheles stephensi by increasing X gene expression
Cited by: 14
Author(s): Yumin Qi, Yang Wu, Randy Saunders, Xiaoguang Chen, Chunhong Mao, James K. Biedler, Zhijian Tu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.02074

The Transcription Unit Architecture of Streptomyces lividans TK24
Cited by: 23
Author(s): Yong Jae Lee, Namil Lee, Yu‐Jin Jeong, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard Ø. Palsson, Byung-Kwan Cho
Software Mentions: 1
Published: about 7 years ago

10.1016/j.csbj.2021.01.045

Defining the wheat microbiome: Towards microbiome-facilitated crop production
Cited by: 36
Author(s): Vanessa Nessner Kavamura, Rodrigo Mendes, Adnane Bargaz, Tim H. Mauchline
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-016-2638-x

Temporal Dysynchrony in brain connectivity gene expression following hypoxia
Cited by: 3
Author(s): Brett Milash, Junyuan Gao, Tamara J. Stevenson, Jong Hyun Son, Tiffanie Dahl, Joshua L. Bonkowsky
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.664598

Genomic and Transcriptomic Investigation of the Physiological Response of the Methylotroph Bacillus methanolicus to 5-Aminovalerate
Cited by: 3
Author(s): Carsten Haupka, Luciana Fernandes de Brito, Tobias Busche, Daniel Wibberg, Volker F. Wendisch
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1907-4

Early transcriptional events linked to induction of diapause revealed by RNAseq in larvae of drosophilid fly, Chymomyza costata
Cited by: 74
Author(s): Rodolphe Poupardin, Konrad Schöttner, Jaroslava Korbelová, Jan Provazník, David Doležel, Dinko Pavlinic, Vladimı́r Beneš, Vladimı́r Košťál
Software Mentions: 1
Published: about 11 years ago

10.1155/2021/5587412

Increased miR-188-3p in Ovarian Granulosa Cells of Patients with Polycystic Ovary Syndrome
Cited by: 3
Author(s): Bingbing Dai, Jun Jiang
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/5543747

Transcriptome Classification Reveals Molecular Subgroups in Patients with Hepatitis B Virus
Cited by: 3
Author(s): Conghui Zhang, Jie Li, Lan Yang, Fei Xu, Huiyuan She, Xinghui Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01829-4

IFN signaling and neutrophil degranulation transcriptional signatures are induced during SARS-CoV-2 infection
Cited by: 62
Author(s): Bruce A. Rosa, Mushtaq Ahmed, Dhiraj Kumar Singh, José Alberto Choreño-Parra, Journey Cole, Luis Armando Jiménez-Álvarez, Tatiana Sofia Rodrı́guez-Reyna, Bindu Singh, Olga González, Ricardo Carrión, Larry S. Schlesinger, John Martin, Joaquı́n Zúñiga, Makedonka Mitreva, Deepak Kaushal, Shabaana A. Khader
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.40448

H3K9me3 is required for inheritance of small RNAs that target a unique subset of newly evolved genes
Cited by: 33
Author(s): Itamar Lev, Hila Gingold, Oded Rechavi
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-06884-5

Identification of candidate genes and regulatory factors related to growth rate through hypothalamus transcriptome analyses in broiler chickens
Cited by: 9
Author(s): Katarzyna Piórkowska, Kacper Żukowski, Katarzyna Połtowicz, Joanna Nowak, Katarzyna Ropka‐Molik, Natalia Derebecka, Joanna Wesoły, Dorota Wojtysiak
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-02283-y

Guard cells control hypocotyl elongation through HXK1, HY5, and PIF4
Cited by: 9
Author(s): Gilor Kelly, Danja Brandsma, Aiman Egbaria, O. Stein, Adi Doron‐Faigenboim, Nitsan Lugassi, Eduard Belausov, Hanita Zemach, Felix Shaya, Nir Carmi, Nir Sade, David Granot
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01667-4

Plexin-B2 facilitates glioblastoma infiltration by modulating cell biomechanics
Cited by: 13
Author(s): Yong Huang, Rut Tejero, Vivian K. Lee, Concetta Brusco, Theodore Hannah, Taylor Bertucci, Chrystian Junqueira Alves, Igor Katsyv, Michael Kluge, Ramsey A. Foty, Bin Zhang, Caroline C. Friedel, Guohao Dai, Hongyan Zou, Roland H. Friedel
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-021-02004-5

ExoSTING, an extracellular vesicle loaded with STING agonists, promotes tumor immune surveillance
Cited by: 58
Author(s): Su Chul Jang, Kyriakos D. Economides, Raymond J. Moniz, Chang Ling Sia, Nuruddeen D. Lewis, Christine McCoy, Tong Zi, Kelvin Zhang, Rane A. Harrison, Joanne Y.H. Lim, Joyoti Dey, Marc Grenley, Katherine Kirwin, Nikki L. Ross, Raymond W. Bourdeau, Agata Villiger-Oberbek, Scott Estes, Ke Xu, Jorge Sanchez-Salazar, Kevin Dooley, William K. Dahlberg, Douglas E. Williams, Sriram Sathyanarayanan
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01749-3

A hexokinase isoenzyme switch in human liver cancer cells promotes lipogenesis and enhances innate immunity
Cited by: 18
Author(s): Laure Perrin-Cocon, Pierre‐Olivier Vidalain, Clémence Jacquemin, Anne Aublin-Gex, Keedrian Olmstead, Baptiste Panthu, Gilles Rautureau, Patrice André, Piotr Nyczka, Marc‐Thorsten Hütt, Nívea Dias Amoêdo, Rodrigue Rossignol, Fabian V. Filipp, Vincent Lotteau, Olivier Diaz
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02238-3

A porcine brain-wide RNA editing landscape
Cited by: 2
Author(s): Jinrong Huang, Lin Lin, Zhanying Dong, Ling Yang, Tianyu Zheng, Wen-ju Gu, Yan Zhang, Tailang Yin, Evelina Sjöstedt, Jan Mulder, Mathias Uhlén, Karsten Kristiansen, Lars Bolund, Yonglun Luo
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5524-5

The NAC family transcription factor GmNAC42–1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean
Cited by: 21
Author(s): Asraful Jahan, Brianna Harris, Matthew Lowery, Katie Coburn, Aniello M. Infante, Ryan Percifield, Amanda G. Ammer, Nik Kovinich
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00366

The Response of a 16S Ribosomal RNA Gene Fragment Amplified Community to Lead, Zinc, and Copper Pollution in a Shanghai Field Trial
Cited by: 68
Author(s): Shumeng Kou, Gilles Vincent, Emmanuel González, Frédéric E. Pitre, Michel Labrecque, Nicholas J. B. Brereton
Software Mentions: 1
Published: over 8 years ago

10.1038/s42003-019-0515-2

Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi
Cited by: 8
Author(s): Sira Sriswasdi, Masako Takashima, Ri-ichiroh Manabe, Moriya Ohkuma, Wataru Iwasaki
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.536865

Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2
Cited by: 14
Author(s): Byung Kwon Jung, Jerald Conrad Ibal, Huy Quang Pham, Min‐Chul Kim, Gun-Seok Park, Sung-Jun Hong, Hyung Woo Jo, Chang Eon Park, Seung-Dae Choi, Young Hun Jung, Setu Bazie Tagele, Jae‐Ho Shin
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.02022

Amphotericin B Specifically Induces the Two-Component System LnrJK: Development of a Novel Whole-Cell Biosensor for the Detection of Amphotericin-Like Polyenes
Cited by: 11
Author(s): Ainhoa Revilla-Guarinos, Franziska Dürr, Philipp F. Popp, Michaela Döring, Thorsten Mascher
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-4570-8

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
Cited by: 35
Author(s): Kai Kristoffer Lie, Ole K. Tørresen, Monica Hongrø Solbakken, Ivar Rønnestad, Ave Tooming‐Klunderud, Alexander Johan Nederbragt, Sissel Jentoft, Øystein Sæle
Software Mentions: 1
Published: over 8 years ago

10.1038/s42003-021-01978-6

A deimmunized and pharmacologically optimized Toll-like receptor 5 agonist for therapeutic applications
Cited by: 11
Author(s): Vadim Mett, Oleg V. Kurnasov, Ivan A. Bespalov, Ivan Molodtsov, Craig M. Brackett, Lyudmila Burdelya, Andrei A. Purmal, Anatoli S. Gleiberman, Ilia Toshkov, Catherine Burkhart, Yakov Kogan, Ekaterina L. Andrianova, Andrei V. Gudkov, Andrei L. Osterman
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583