bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1186/s13046-018-0897-x

Vitexin compound 1, a novel extraction from a Chinese herb, suppresses melanoma cell growth through DNA damage by increasing ROS levels
Cited by: 48
Author(s): Nian Liu, Kuan Song Wang, Min Qi, Ying Zhou, Guang Zeng, Juan Tao, Jiayi Zhou, Jiang Lin Zhang, Xiang Chen, Cong Peng
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers13081975

Profiling of Adipose and Skeletal Muscle in Human Pancreatic Cancer Cachexia Reveals Distinct Gene Profiles with Convergent Pathways
Cited by: 7
Author(s): Ashok Narasimhan, Xiaoling Zhong, Ernie D. Au, Eugene P. Ceppa, Atilla Nakeeb, Michael G. House, Nicholas J. Zyromski, C. Max Schmidt, Katheryn N. H. Schloss, Daniel Schloss, Yunlong Liu, Guanglong Jiang, Bradley A. Hancock, Milan Radovich, Joshua K. Kays, Safi Shahda, Marion E. Couch, Leonidas G. Koniaris, Teresa A. Zimmers
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-019-1032-3

PAGE4 promotes prostate cancer cells survive under oxidative stress through modulating MAPK/JNK/ERK pathway
Cited by: 18
Author(s): Chengcheng Lv, Shui Fu, Qingzhuo Dong, Zi Yu, Gejun Zhang, Chuize Kong, Cheng Fu, Yu Zeng
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers12082285

YB-1 Knockdown Inhibits the Proliferation of Mesothelioma Cells through Multiple Mechanisms
Cited by: 9
Author(s): Thomas G. Johnson, Karin Schelch, Kaitao Lai, Kamila A. Marzec, Marina Kennerson, Michael Grusch, Glen Reid, Andrew Burgess
Software Mentions: 1
Published: about 6 years ago

10.1186/s12918-018-0652-0

scdNet: a computational tool for single-cell differential network analysis
Cited by: 12
Author(s): Yi-Chang Chiu, Tzu Hung Hsiao, Li J. Wang, Yidong Chen, Yu Shao
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13046-019-1241-9

Minichromosome maintenance 3 promotes hepatocellular carcinoma radioresistance by activating the NF-κB pathway
Cited by: 29
Author(s): Qing Yang, Binhui Xie, Hui Tang, Meng Wang, Changchang Jia, Xiaomei Zhang, Yi Zhang, Jianwen Zhang, Heping Li, Binsheng Fu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-019-1427-1

Impact of Docetaxel on blood-brain barrier function and formation of breast cancer brain metastases
Cited by: 9
Author(s): Simon Bernatz, Elena I. Ilina, Kavi Devraj, Patrick N. Harter, Klaus Mueller, Sascha Kleber, Yannick Braun, Cornelia Penski, Christoph Renner, Rashi Halder, Lukas Jennewein, Christine Solbach, Frits Thorsen, Bernhard Paulweber, Axel Mischo, Michel Mittelbronn
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.18328

A keratinocyte life cycle model identifies novel host genome regulation by human papillomavirus 16 relevant to HPV positive head and neck cancer
Cited by: 36
Author(s): Michael R. Evans, Claire D. James, Öonagh Loughran, Tara J. Nulton, Xu Wang, Molly L. Bristol, Brad Windle, Iain M. Morgan
Software Mentions: 1
Published: over 9 years ago

10.1186/s13046-020-01815-4

Impact of the acidic environment on gene expression and functional parameters of tumors in vitro and in vivo
Cited by: 13
Author(s): Mandy Rauschner, Luisa Lange, Thea Hüsing, Sarah Reime, Alexander Nolze, Marcel Maschek, Oliver Thews, Anne Riemann
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-01875-0

A preliminary study of micro-RNAs as minimally invasive biomarkers for the diagnosis of prostate cancer patients
Cited by: 16
Author(s): Simona Giglio, Cosimo De Nunzio, Roberto Cirombella, Antonella Stoppacciaro, Omar Faruq, Stefano Volinia, Gustavo Baldassarre, Andrea Tubaro, Hideshi Ishii, Carlo M. Croce, Andrea Vecchione
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/6681925

Identification of Critical Genes and lncRNAs in Osteolysis after Total Hip Arthroplasty and Osteoarthritis by RNA Sequencing
Cited by: 2
Author(s): Guang Yang, Kai Tang, Qiao Li, Yixin Li, Shui Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13184528

Surfaceome Profiling of Rhabdomyosarcoma Reveals B7-H3 as a Mediator of Immune Evasion
Cited by: 11
Author(s): Roxane R. Lavoie, Patricio C. Gargollo, Mohamed E. Ahmed, Young S. Kim, Emily Baer, Doris A. Phelps, Cristine Charlesworth, Benjamin J. Madden, Liguo Wang, Peter J. Houghton, John C. Cheville, Haidong Dong, Candace F. Granberg, Fabrice Lucien
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13122873

A Novel Signature of CCNF-Associated E3 Ligases Collaborate and Counter Each Other in Breast Cancer
Cited by: 15
Author(s): Shu Chun Chang, Chin Sheng Hung, Bo Xiang Zhang, Tsung Han Hsieh, Wei‐Hsiu Hsu, Jeak Ling Ding
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11020164

MEK Inhibition Induces Canonical WNT Signaling through YAP in KRAS Mutated HCT-15 Cells, and a Cancer Preventive FOXO3/FOXM1 Ratio in Combination with TNKS Inhibition
Cited by: 9
Author(s): Nina Solberg, Maria Melheim, Martin Frank Strand, Petter Angell Olsen, Stefan Krauß
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13163970

Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects
Cited by: 1
Author(s): Matthieu Meryet-Figuière, Mégane Vernon, Mamy Andrianteranagna, Bernard Lambert, Célia Brochen, Jean-Paul Issartel, Audrey Guttin, Pascal Gauduchon, Émilie Brotin, Florent Dingli, Damarys Loew, Nicolas Vigneron, Anaïs Wambecke, Edwige Abeilard, Emmanuel Barillot, Laurent Poulain, Loredana Martignetti, Christophe Denoyelle
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13071554

MicroRNAs Possibly Involved in the Development of Bone Metastasis in Clear-Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Lisa Kinget, Eduard Roussel, Diether Lambrechts, Bram Boeckx, Loïc Vanginderhuysen, Maarten Albersen, Cristina Rodríguez‐Antona, Osvaldo Graña‐Castro, Lucía Inglada-Pérez, Annelies Verbiest, Jessica Zucman–Rossi, Gabrielle Couchy, Stefano Caruso, Annouschka Laenen, Marcella Baldewijns, Benoît Beuselinck
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11070921

Comparative Transcriptomic Analysis of Temozolomide Resistant Primary GBM Stem-Like Cells and Recurrent GBM Identifies Up-Regulation of the Carbonic Anhydrase CA2 Gene as Resistance Factor
Cited by: 17
Author(s): Ricarda Hannen, Martin Selmansberger, Maria Hauswald, Axel Pagenstecher, Andrea Nist, Thorsten Stiewe, Till Acker, Barbara Carl, Christopher Nimsky, Jörg W. Bartsch
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers12010188

Small RNA Profiling of piRNAs in Colorectal Cancer Identifies Consistent Overexpression of piR-24000 That Correlates Clinically with an Aggressive Disease Phenotype
Cited by: 16
Author(s): Deepak Narayanan Iyer, Timothy Ming‐Hun Wan, Johnny Hon-Wai Man, Ryan Wai-Yan Sin, Xue Li, Oswens Siu-Hung Lo, Chi Chung Foo, Roberta Pang, Wai‐Lun Law, Lui Ng
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12040923

Ex Vivo Organoid Cultures Reveal the Importance of the Tumor Microenvironment for Maintenance of Colorectal Cancer Stem Cells
Cited by: 36
Author(s): Xingru Li, Pär Larsson, Ingrid Ljuslinder, Daniel Öhlund, Robin Myte, Anna Löfgren-Burström, Carl Zingmark, Agnes Ling, Sofia Edin, Richard Palmqvist
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13133168

Efficient Heat Shock Response Affects Hyperthermia-Induced Radiosensitization in a Tumor Spheroid Control Probability Assay
Cited by: 2
Author(s): Oleg Chen, Soňa Michlíková, Lisa Eckhardt, Marit Wondrak, Adriana M. De Mendoza, Mechthild Krause, Damian D. McLeod, Leoni A. Kunz-Schughart
Software Mentions: 1
Published: about 5 years ago

10.1186/s13104-021-05488-w

Blood transcriptome analysis of patients with uncomplicated bacterial infection and sepsis
Cited by: 10
Author(s): Velma Herwanto, Benjamin Tang, Ya Wang, Maryam Shojaei, Marek Nalos, Amith Shetty, Kevin Lai, Anthony S. McLean, Klaus Schughart
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13081909

Loss of RET Promotes Mesenchymal Identity in Neuroblastoma Cells
Cited by: 5
Author(s): Joachim Tetteh Siaw, Jonatan L. Gabre, Ezgi Uçkun, Marc Vigny, Wancun Zhang, Jimmy Van den Eynden, Bengt Hållberg, Ruth Palmer, Jikui Guan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0201278

Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny
Cited by: 14
Author(s): Anne‐Catrin Adam, Kaja H. Skjærven, Paul Whatmore, Mari Moren, Kai Kristoffer Lie
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0190075

The impact of persistent bacterial bronchitis on the pulmonary microbiome of children
Cited by: 22
Author(s): Leah Cuthbertson, Vanessa Craven, Lynne Bingle, William Cookson, Mark L. Everard, Miriam F. Moffatt
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.65484

Cytosolic aggregation of mitochondrial proteins disrupts cellular homeostasis by stimulating the aggregation of other proteins
Cited by: 37
Author(s): Urszula Nowicka, Piotr Chrościcki, Karen Stroobants, Maria Sladowska, Michał Turek, Barbara Uszczyńska-Ratajczak, Rishika Kundra, Tomasz Góral, Michele Perni, Christopher M. Dobson, Agnieszka Chacińska
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0230110

Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing)
Cited by: 22
Author(s): Luis Villar, Ixia Lienqueo, Analía Llanes, Pamela Rojas, J. Pérez, Francisco Correa, Boris Sagredo, Oscar Masciarelli, Virginia Luna, Rubén Almada
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.47929

Cardiac neural crest contributes to cardiomyocytes in amniotes and heart regeneration in zebrafish
Cited by: 44
Author(s): Weiyi Tang, Megan L. Martik, Yuwei Li, Marianne E. Bronner
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.63300

PIE-1 SUMOylation promotes germline fates and piRNA-dependent silencing in C. elegans
Cited by: 8
Author(s): Hee-Sun Kim, Yue-He Ding, Shan Lu, Mei-Qing Zuo, Wendy D Tan, Darryl Conte, Meng‐Qiu Dong, Craig C. Mello
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.33498

LRRTM1 underlies synaptic convergence in visual thalamus
Cited by: 29
Author(s): Aboozar Monavarfeshani, Gail Stanton, Jonathan Van Name, Kaiwen Su, William A. Mills, Kenya Swilling, Alicia Kerr, Natalie A Huebschman, Jianmin Su, Michael A. Fox
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0237023

Ultraviolet B irradiation enhances the secretion of exosomes by human primary melanocytes and changes their exosomal miRNA profile
Cited by: 17
Author(s): Zeren Shen, Jiaqi Sun, Jinjin Shao, Jinghong Xu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0213298

Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene
Cited by: 17
Author(s): Pablo del Cerro, Manuel Megı́as, Francisco Javier López‐Baena, Antonio Gil‐Serrano, Francisco Javier Ollero
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1009887

Aconitate decarboxylase 1 participates in the control of pulmonary Brucella infection in mice
Cited by: 13
Author(s): Aurore Demars, Armelle Vitali, Audrey Comein, Elodie Carlier, Abdulkader Azouz, Stanislas Goriely, Justine Smout, Véronique Flamand, Mégane Van Gysel, Johan Wouters, Jan Abendroth, Thomas E. Edwards, Arnaud Machelart, Eik Hoffmann, Priscille Brodin, Xavier De Bolle, Eric Muraille
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009534

Dual transcriptional analysis reveals adaptation of host and pathogen to intracellular survival of Pseudomonas aeruginosa associated with urinary tract infection
Cited by: 24
Author(s): Cristina Peñaranda, Nicole M. Chumbler, Deborah T. Hung
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009252

Human FcRn expression and Type I Interferon signaling control Echovirus 11 pathogenesis in mice
Cited by: 10
Author(s): Alexandra I. Wells, Kalena A. Grimes, Kenneth S. Kim, Emilie Branche, Christopher J. Bakkenist, William H. DePas, Sujan Shresta, Carolyn B. Coyne
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0256390

Subanesthetic ketamine rapidly alters medial prefrontal miRNAs involved in ubiquitin-mediated proteolysis
Cited by: 3
Author(s): Yun-Shik Choi, Baeksun Kim, Suji Ham, Shin-Ho Chung, Sungho Maeng, Hye Sun Kim, Heh In Im
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0225564

De novo transcriptome sequence of Senna tora provides insights into anthraquinone biosynthesis
Cited by: 13
Author(s): Sang-Ho Kang, Woo-Haeng Lee, Chang-Muk Lee, Joon-Soo Sim, So Youn Won, So-Ra Han, Soo-Jin Kwon, Jung Sun Kim, Chang-Kug Kim, Tae‐Jin Oh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1009075

A salivary chitinase of Varroa destructor influences host immunity and mite’s survival
Cited by: 8
Author(s): Andrea Becchimanzi, Rosarita Tatè, Ewan M. Campbell, Silvia Gigliotti, Alan K. Bowman, Francesco Pennacchio
Software Mentions: 1
Published: almost 6 years ago

10.1093/pcmedi/pbaa037

Vegetarian diets, circulating miRNA expression and healthspan in subjects living in the Blue Zone
Cited by: 9
Author(s): Tiantian Liu, Nicole M. Gatto, Zhong Chen, Hongyu Qiu, Grace Lee, Penelope J. Duerksen-Hughes, Gary E. Fraser, Charles Wang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0180282

Molecular characterization of the acquisition of longevity during seed maturation in soybean
Cited by: 58
Author(s): Juliana Joice Pereira Lima, Julia Buitink, David Lalanne, Rubiana Falopa Rossi, Sandra Pelletier, Edvaldo Aparecido Amaral da Silva, Olivier Leprince
Software Mentions: 1
Published: about 9 years ago

10.1073/pnas.1811768116

Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain
Cited by: 44
Author(s): Anne L. Sapiro, Anat Shmueli, Gilbert L. Henry, Qin Li, Tali Shalit, Orly Yaron, Yoav Paas, Galit Shohat-Ophir
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/8890176

Transcriptomic Analyses Reveal Gene Expression Profiles and Networks in Nasopharyngeal Carcinoma
Cited by: 3
Author(s): Yuwen Zhou, Weiqiang Yang, Xueshuang Mei, Hongyi Hu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0175924

GmDREB1 overexpression affects the expression of microRNAs in GM wheat seeds
Cited by: 7
Author(s): Qiyan Jiang, Xianjun Sun, Fengjuan Niu, Zheng Hu, Rui Chen, Hui Zhang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1008944

Feline calicivirus strain 2280 p30 antagonizes type I interferon-mediated antiviral innate immunity through directly degrading IFNAR1 mRNA
Cited by: 6
Author(s): Tian Jin, Huifang Kang, Jiapei Huang, Zhijie Li, Yudi Pan, Li Yin, Si Chen, Jikai Zhang, Hong Yin, Liandong Qu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0178302

A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling
Cited by: 126
Author(s): Joanne M. Yeakley, Peter J. Shepard, Diana E. Goyena, Harper VanSteenhouse, J. McComb, Bruce Seligmann
Software Mentions: 1
Published: over 9 years ago

10.1073/pnas.1912074117

Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters
Cited by: 21
Author(s): Mathieu Boulard, Sofia Rucli, John Edwards, Timothy H. Bestor
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1008901

C-type lectin-mediated microbial homeostasis is critical for Helicoverpa armigera larval growth and development
Cited by: 13
Author(s): Wenwen Wang, Guijie Wang, Xiao-Rong Zhuo, Yu Liu, Lin Tang, Xusheng Liu, Jialin Wang
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.19386

Implications of PI3K/AKT inhibition on REST protein stability and neuroendocrine phenotype acquisition in prostate cancer cells
Cited by: 33
Author(s): Ruiqui Chen, Yinan Li, Ralph Buttyan, Xuesen Dong
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1008595

Pyrrocidine, a molecular off switch for fumonisin biosynthesis
Cited by: 11
Author(s): Minglu Gao, Anthony E. Glenn, Xi Gu, Trevor R. Mitchell, Timothy Satterlee, Mary V. Duke, Brian E. Scheffler, Scott E. Gold
Software Mentions: 1
Published: about 6 years ago

10.1073/pnas.2026183118

Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD + capping
Cited by: 14
Author(s): Hailei Zhang, Huan Zhong, Xufeng Wang, Shoudong Zhang, Xiaojian Shao, Hao Hu, Zhi‐Ling Yu, Zongwei Cai, Xuemei Chen, Yiji Xia
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0172671

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing
Cited by: 22
Author(s): Christopher A. Werley, Miao‐Ping Chien, Jellert T. Gaublomme, Karthik Shekhar, Vincent Butty, B. Alexander Yi, Joel M. Kralj, William Bloxham, Laurie A. Boyer, Aviv Regev, Adam E. Cohen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1008423

The intergenic small non-coding RNA ittA is required for optimal infectivity and tissue tropism in Borrelia burgdorferi
Cited by: 13
Author(s): Diana N. Medina-Pérez, Beau Wager, Erin B. Troy, Lihui Gao, Steven J. Norris, Tao Lin, Linden T. Hu, Jenny A. Hyde, Meghan Lybecker, Jon T. Skare
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0251575

The FTZ-F1 gene encodes two functionally distinct nuclear receptor isoforms in the ectoparasitic copepod salmon louse (Lepeophtheirus salmonis)
Cited by: 5
Author(s): Joakim Brunet, Christiane Eichner, Rune Male
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1008453

Broad spectrum immunomodulatory effects of Anopheles gambiae microRNAs and their use for transgenic suppression of Plasmodium
Cited by: 20
Author(s): Shikui Dong, Xiao Fu, Yuemei Dong, Maria L. Simões, Jinsong Zhu, George Dimopoulos
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1008375

Dynamic interactions within the host-associated microbiota cause tumor formation in the basal metazoan Hydra
Cited by: 19
Author(s): Kai Rathje, Benedikt M Mortzfeld, Marc P. Hoeppner, Jan Taubenheim, Thomas C. G. Bosch, Alexander Klimovich
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0232215

Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?
Cited by: 13
Author(s): Cécile Angebault, Mathilde Payen, Paul‐Louis Woerther, Christophe Rodriguez, Françoise Botterel
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0183179

Ancestry as a potential modifier of gene expression in breast tumors from Colombian women
Cited by: 18
Author(s): Silvia J. Serrano-Gómez, María Carolina Sanabria‐Salas, Jone Garay, Melody Baddoo, Gustavo Hernández-Suárez, Juan Carlos Mejía, Oscar Garcı́a, Lucio Miele, Laura Fejerman, Jovanny Zabaleta
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0255672

Clinical impact of serum exosomal microRNA in liver fibrosis
Cited by: 11
Author(s): Young Woon Chang, Jae‐A Han, Suk Min Kang, Soung Won Jeong, Tom Ryu, Han Seul Park, Jeong‐Ju Yoo, Sae Hwan Lee, Sang Gyune Kim, Young Seok Kim, Hong Soo Kim, So Young Jin, Seongho Ryu, Jae Young Jang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1008138

G protein α subunit suppresses sporangium formation through a serine/threonine protein kinase in Phytophthora sojae
Cited by: 12
Author(s): Min Qu, Yaning Li, Xin Zhang, Mingrun Xuan, Baiyu Zhang, Wenwu Ye, Xiaobo Zheng, F. Govers, Yuanchao Wang
Software Mentions: 1
Published: over 6 years ago

10.1007/s13238-020-00811-w

Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection
Cited by: 63
Author(s): Rongjuan Pei, Jianqi Feng, Yecheng Zhang, Hao Sun, Lian Li, Xuejie Yang, Jiangping He, Shuqi Xiao, Ji Xiong, Ying Lin, Kai Wen, Hongwei Zhou, Jiekai Chen, Zhili Rong, Xinwen Chen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0153351

Characterization of the Probiotic Yeast Saccharomyces boulardii in the Healthy Mucosal Immune System
Cited by: 60
Author(s): Lauren E. Hudson, Courtney D. McDermott, Taryn P. Stewart, William Henry Hudson, Daniel Ríos, Milo B. Fasken, Anita H. Corbett, Tracey J. Lamb
Software Mentions: 1
Published: over 10 years ago

10.1172/jci.insight.144351

Acyl-CoA synthetase 6 is required for brain docosahexaenoic acid retention and neuroprotection during aging
Cited by: 14
Author(s): Regina F. Fernandez, Andrea M. Pereyra, Victoria D Diaz, Emily S Wilson, Karen Litwa, Jonatan Martínez‐Gardeazabal, Shelley N. Jackson, J. Thomas Brenna, Brian P. Hermann, Jeffrey B. Eells, Jessica M. Ellis
Software Mentions: 1
Published: over 5 years ago

10.1007/s00213-018-5094-2

Altered fecal microbiota composition in the Flinders sensitive line rat model of depression
Cited by: 39
Author(s): Sandra Tillmann, Anders Abildgaard, Gudrun Winther, Gregers Wegener
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.20166

The IDO inhibitor 1-methyl tryptophan activates the aryl hydrocarbon receptor response in mesenchymal stromal cells
Cited by: 23
Author(s): Christopher N. Lewis, Raghavan Chinnadurai, Steven E. Bosinger, Jacques Galipeau
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0213299

High-fat diet impacts more changes in beta-cell compared to alpha-cell transcriptome
Cited by: 13
Author(s): Rodolphe Dusaulcy, Sandra Handgraaf, Florian Visentin, Cédric Howald, Emmanouil T. Dermitzakis, Jacques Philippe, Yvan Gosmain
Software Mentions: 1
Published: over 7 years ago

10.1172/jci.insight.142205

Selective inhibition of JAK3 signaling is sufficient to reverse alopecia areata
Cited by: 32
Author(s): Zhijun Dai, James Chen, Yi‐Lu Chang, Angela M. Christiano
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.144799

Myofibroblast dedifferentiation proceeds via distinct transcriptomic and phenotypic transitions
Cited by: 36
Author(s): S.M. Fortier, L.R.K. Penke, Dana King, Tho X. Pham, Giovanni Ligresti, Marc Peters‐Golden
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.139965

Stem cell transplantation uncovers TDO-AHR regulation of lung dendritic cells in herpesvirus-induced pathology
Cited by: 5
Author(s): Stephen J. Gurczynski, Nicolas L Pereira, Steven Hrycaj, Carol A. Wilke, Rachel L. Zemans, Bethany B. Moore
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0244065

A strategic expression method of miR-29b and its anti-fibrotic effect based on RNA-sequencing analysis
Cited by: 7
Author(s): Xiaoming Fan, Yingnyu Gao, Xiaolu Zhang, Haroon Y. Lughmani, David J. Kennedy, Steven T. Haller, Sandrine V. Pierre, Joseph I. Shapiro, Jiang Tian
Software Mentions: 1
Published: almost 6 years ago

10.1098/rsos.171743

Glucocorticoids modulate gastrointestinal microbiome in a wild bird
Cited by: 74
Author(s): José C. Noguera, Manuel Aira, Marcos Pérez‐Losada, Jorge Domínguez, Alberto Velando
Software Mentions: 1
Published: over 8 years ago

10.1172/jci.insight.141776

Sodium channel β1 subunits participate in regulated intramembrane proteolysis-excitation coupling
Cited by: 11
Author(s): Alexandra A. Bouza, Nnamdi Edokobi, Samantha L. Hodges, Alexa M Pinsky, James Offord, Lin Piao, Yan Zhao, Anatoli N. Lopatin, Luis F. Lopez-Santiago, Lori L. Isom
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.139783

Assessment of HIV-1 integration in tissues and subsets across infection stages
Cited by: 10
Author(s): Vincent H. Wu, Christopher L. Nobles, Leticia Kuri-Cervantes, Kevin McCormick, J.K. Everett, Son Nguyen, Perla M. Del Río Estrada, Mauricio González-Navarro, Fernanda Torres-Ruiz, Santiago Ávila‐Ríos, Gustavo Reyes‐Terán, Frederic D. Bushman, Michael R. Betts
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.140458

CD47 prevents the elimination of diseased fibroblasts in scleroderma
Cited by: 22
Author(s): Tristan Lerbs, Lü Cui, Megan E. King, Tim Chai, Claire Muscat, Lorinda Chung, Ryanne A. Brown, Kerri E. Rieger, Tyler Shibata, Gerlinde Wernig
Software Mentions: 1
Published: about 6 years ago

10.1172/jci.insight.120723

Placental polyamine metabolism differs by fetal sex, fetal growth restriction, and preeclampsia
Cited by: 54
Author(s): Sungsam Gong, Ulla Sovio, Irving L.M.H. Aye, Francesca Gaccioli, Justyna Dopierała, Michelle D. Johnson, Angela Wood, Emma Cook, Benjamin Jenkins, Albert Koulman, Robert A. Casero, Miguel Constância, D. Stephen Charnock-Jones, Gordon C. S. Smith
Software Mentions: 1
Published: about 8 years ago

10.1002/jbm4.10483

Skeletal Response to Insulin in the Naturally Occurring Type 1 Diabetes Mellitus Mouse Model
Cited by: 7
Author(s): Manisha Dixit, Zhongbo Liu, Sher Bahadur Poudel, Gozde Yildirim, Yanjiao Zhang Zhang, Shilpa Mehta, Omer Murik, Gheona Altarescu, Yoshifumi Kobayashi, Emi Shimizu, Mitchell B. Schaffler, Shoshana Yakar
Software Mentions: 1
Published: over 5 years ago

10.1016/j.redox.2019.101323

A Caenorhabditis elegans ortholog of human selenium-binding protein 1 is a pro-aging factor protecting against selenite toxicity
Cited by: 16
Author(s): Karl Köhnlein, Nadine Urban, David Guerrero-Gómez, Holger Steinbrenner, Pavel Urbánek, Josephine Priebs, Philipp Koch, Christoph Kaether, Antonio Miranda‐Vizuete, Lars‐Oliver Klotz
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.52168

Single cell analysis reveals human cytomegalovirus drives latently infected cells towards an anergic-like monocyte state
Cited by: 37
Author(s): Miri Shnayder, Aharon Nachshon, Batsheva Rozman, Biana Bernshtein, Michael Lavi, Noam Fein, Emma Poole, Selmir Avdic, Emily Blyth, David Gottlieb, Allison Abendroth, Barry Slobedman, John Sinclair, Noam Stern-Ginossar, Michal Schwartz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0181084

Transcriptional profiling of the rat nucleus accumbens after modest or high alcohol exposure
Cited by: 6
Author(s): Julia Morud, Arghavan Ashouri, Erik Larsson, Mia Ericson, Bo Söderpalm
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0235183

ZBTB38 is dispensable for antibody responses
Cited by: 4
Author(s): Rachel Wong, Deepta Bhattacharya
Software Mentions: 1
Published: about 6 years ago

10.1186/s40635-021-00406-7

Progranulin signaling in sepsis, community-acquired bacterial pneumonia and COVID-19: a comparative, observational study
Cited by: 6
Author(s): Florian Brandes, Melanie Borrmann, Dominik Buschmann, Agnes S. Meidert, Marlene Reithmair, Markus Langkamp, Lutz Pridzun, Benedikt Kirchner, Jean-Noël Billaud, Nirav M. Amin, Joseph C. Pearson, Matthias Klein, Daniela Hauer, Clarissa Gevargez Zoubalan, Anja Lindemann, Alexander Choukèr, Thomas W. Felbinger, Ortrud K. Steinlein, Michael W. Pfaffl, Inès Kaufmann, Gustav Schelling
Software Mentions: 1
Published: about 5 years ago

10.1530/REP-21-0209

Effect of in vitro growth on mouse oocyte competency, mitochondria and transcriptome
Cited by: 6
Author(s): Tomoya Takashima, Tsubasa Fujimaru, Yayoi Obata
Software Mentions: 1
Published: almost 5 years ago

10.3390/insects12080736

Transcriptome Analysis of Hormone-and Cuticle-Related Genes in the Development Process of Deutonymph in Tetranychus urticae
Cited by: 2
Author(s): Gang Li, Xinyao Gu, Shun‐Hua Gui, Jianjun Guo, Tian‐Ci Yi, Dao‐Chao Jin
Software Mentions: 1
Published: about 5 years ago

10.3390/insects12080661

Identification and Expression Profile of Chemosensory Genes in the Small Hive Beetle Aethina tumida
Cited by: 8
Author(s): Lixian Wu, Xin Zhai, Liangbin Li, Qiang Li, Fang Liu, Hongxia Zhao
Software Mentions: 1
Published: about 5 years ago

10.3390/insects12030237

Regulation of Juvenile Hormone on Summer Diapause of Geleruca daurica and Its Pathway Analysis
Cited by: 32
Author(s): Hong-Yue Ma, Yanyan Li, Ling Li, Yao Tan, Bao-Ping Pang
Software Mentions: 1
Published: over 5 years ago

10.3390/insects11030171

Transcriptome Analyses of Diaphorina citri Midgut Responses to Candidatus Liberibacter Asiaticus Infection
Cited by: 28
Author(s): Hai‐Zhong Yu, Ning‐Yan Li, Xiang-Dong Zeng, Jian-Chun Song, Yu Xj, Huanan Su, Ci-Xiang Chen, Long Yi, Zhanjun Lu
Software Mentions: 1
Published: over 6 years ago

10.3390/insects11020139

Transcriptomic Analysis of the Brown Planthopper, Nilaparvata lugens, at Different Stages after Metarhizium anisopliae Challenge
Cited by: 5
Author(s): Yifan Peng, Jifeng Tang, Jiaqin Xie
Software Mentions: 1
Published: over 6 years ago

10.1128/IAI.00661-18

Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002
Cited by: 15
Author(s): Kelli Wuerth, Ahwon Lee, Reza Falsafi, Erin E. Gill, Robert E. W. Hancock
Software Mentions: 1
Published: over 7 years ago

10.1128/IAI.01423-15

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91 −/− phox Mice
Cited by: 22
Author(s): A. Grant, Olusegun Oshota, Roy R. Chaudhuri, Matthew Mayho, Sarah Peters, Simon Clare, Duncan J. Maskell, Pietro Mastroeni
Software Mentions: 1
Published: over 10 years ago

10.1128/IAI.00866-16

The Rhomboid Protease GlpG Promotes the Persistence of Extraintestinal Pathogenic Escherichia coli within the Gut
Cited by: 18
Author(s): Colin W. Russell, Amanda C Richards, Alexander S. Chang, Matthew Mulvey
Software Mentions: 1
Published: over 9 years ago

10.4049/immunohorizons.1900099

The Taste Receptor TAS1R3 Regulates Small Intestinal Tuft Cell Homeostasis
Cited by: 42
Author(s): Michael R. Howitt, Ying Cao, Matthew B Gologorsky, Jessica A. Li, Adam L. Haber, Moshe Biton, Jessica Lang, Monia Michaud, Aviv Regev, Wendy S. Garrett
Software Mentions: 1
Published: over 6 years ago

10.1016/j.immuni.2019.05.004

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells
Cited by: 202
Author(s): Sara Omenetti, Claudio Bussi, Amina Metidji, Andrea Iseppon, Sunjae Lee, Mauro Tolaini, Ying Liu, Gavin Kelly, Probir Chakravarty, Saeed Shoaie, Maximiliano G. Gutiérrez, Brigitta Stockinger
Software Mentions: 1
Published: about 7 years ago

10.1016/j.immuni.2019.01.009

Chemokine Receptor Redundancy and Specificity Are Context Dependent
Cited by: 83
Author(s): Douglas P. Dyer, Laura Medina-Ruiz, Robin Bartolini, Fabian Schuette, Catherine E. Hughes, Kenneth Pallas, Francesca Vidler, Megan K. L. MacLeod, Christopher J. Kelly, Kit Ming Lee, Christopher A.H. Hansell, Gerard J. Graham
Software Mentions: 1
Published: over 7 years ago

10.1016/j.immuni.2018.06.012

PD-1 Controls Follicular T Helper Cell Positioning and Function
Cited by: 294
Author(s): Jingwen Shi, Shiyue Hou, Qian Fang, Xin Liu, Xiaolong Liu, Hai Qi
Software Mentions: 1
Published: about 8 years ago

10.1002/iid3.366

Transcriptomic analysis reveals novel mechanisms of SARS‐CoV‐2 infection in human lung cells
Cited by: 12
Author(s): Shaomin Yang, Songbin Wu, Zhijian Yu, Jia-Bin Huang, X.Y. Zhong, Xiao Dong Liu, Hua Zhu, Lizu Xiao, Qi Deng, Wuping Sun
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/2365416

Identification of mRNAs Related to Tibial Cartilage Development of Yorkshire Piglets
Cited by: 1
Author(s): Shuaifei Feng, Xiaoyong Du, Chao Wang, Dengdeng Ye, Guanjun Ma, Shuhong Zhao, Haiyan Wang, Xiangdong Liu
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0170999

Identification of MiR-21-5p as a Functional Regulator of Mesothelin Expression Using MicroRNA Capture Affinity Coupled with Next Generation Sequencing
Cited by: 20
Author(s): Chiara De Santi, Sebastian Vencken, Jonathon Blake, Bettina Haase, Vladimı́r Beneš, Federica Gemignani, Stefano Landi, Catherine M. Greene
Software Mentions: 1
Published: over 9 years ago

10.1186/s12931-020-1295-4

Expression of SMARCD1 interacts with age in association with asthma control on inhaled corticosteroid therapy
Cited by: 4
Author(s): Michael J. McGeachie, Joanne E. Sordillo, Amber Dahlin, Alberta L. Wang, Sharon M. Lutz, Kelan G. Tantisira, Ronald Allan M Panganiban, Quan Lu, Satria Sajuthi, Cydney Urbanek, Rachel S. Kelly, Benjamin Saef, Celeste Eng, Sam S. Oh, Alvin T. Kho, Damien C. Croteau‐Chonka, Scott T. Weiss, Benjamin A. Raby, Angel C. Y. Mak, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold, Ann Chen Wu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.ibror.2018.06.001

The transcriptome of the rat subfornical organ is altered in response to early postnatal overnutrition
Cited by: 7
Author(s): Colleen S. Peterson, Shuo Huang, Samantha A. Lee, Alastair V. Ferguson, Mark Fry
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12931-020-01402-3

T2 and T17 cytokines alter the cargo and function of airway epithelium-derived extracellular vesicles
Cited by: 12
Author(s): Elisabeth Ax, Zala Jevnikar, Aleksander Cvjetkovic, Carina Malmhäll, Henric Olsson, Madeleine Rådinger, Cecilia Lässer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-01522-w

Dexamethasone rescues TGF-β1-mediated β2-adrenergic receptor dysfunction and attenuates phosphodiesterase 4D expression in human airway smooth muscle cells
Cited by: 7
Author(s): Elena Chung, Christie A. Ojiaku, Gaoyuan Cao, Vishal Parikh, B.T. Deeney, Shengjie Xu, Serena Wang, Reynold A. Panettieri, Cynthia Koziol‐White
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12931-021-01645-8

Qi-Long-Tian formula extract alleviates symptoms of acute high-altitude diseases via suppressing the inflammation responses in rat
Cited by: 7
Author(s): Xing Fu, Chunyan Yang, Bing Chen, Kexing Zeng, Siyuan Chen, Fujin Yi
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583