bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fphar.2021.673432

Oxymatrine Synergistically Enhances Doxorubicin Anticancer Effects in Colorectal Cancer
Cited by: 8
Author(s): Di Pan, Wen Zhang, Nenling Zhang, Yini Xu, Yi Chen, Jianqing Peng, Yan Chen, Yanyan Zhang, Xiangchun Shen
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2019.01302

Ketamine and Active Ketamine Metabolites Regulate STAT3 and the Type I Interferon Pathway in Human Microglia: Molecular Mechanisms Linked to the Antidepressant Effects of Ketamine
Cited by: 26
Author(s): Ming‐Fen Ho, Cheng Zhang, Lingxin Zhang, Hu Li, Richard M. Weinshilboum
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12866-021-02257-4

Regulation of virulence and β-lactamase gene expression in Staphylococcus aureus isolates: cooperation of two-component systems in bloodstream superbugs
Cited by: 7
Author(s): Sanaz Dehbashi, Hamed Tahmasebi, Behrouz Zeyni, Mohammad Reza Arabestani
Software Mentions: 1
Published: about 5 years ago

10.1038/s41396-020-00840-7

Ammonia oxidation at pH 2.5 by a new gammaproteobacterial ammonia-oxidizing bacterium
Cited by: 34
Author(s): Nunzia Picone, Arjan Pol, Rob Mesman, Maartje A. H. J. van Kessel, Geert Cremers, A.H. van Gelder, Theo A. van Alen, Mike S. M. Jetten, Sebastian Lücker, Huub J. M. Op den Camp
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.706135

Probiotics Modulate Mouse Gut Microbiota and Influence Intestinal Immune and Serotonergic Gene Expression in a Site-Specific Fashion
Cited by: 15
Author(s): Valentina Taverniti, Valentina Cesari, Giorgio Gargari, Umberto Rossi, Cristina Biddau, Cristina Lecchi, Walter Fiore, Stefania Arioli, I. Toschi, Simone Guglielmetti
Software Mentions: 1
Published: about 5 years ago

10.1038/s41396-020-00811-y

Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy
Cited by: 69
Author(s): Frank X. Ferrer‐González, Brittany Widner, Nicole R. Holderman, John Glushka, Arthur S. Edison, Elizabeth B. Kujawinski, Mary Ann Moran
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2021.649267

Chemoresponse of de novo Acute Myeloid Leukemia to “7+3” Induction can Be Predicted by c-Myc-facilitated Cytogenetics
Cited by: 2
Author(s): Tzu‐Hung Hsiao, Ren‐Ching Wang, Tsai‐Jung Lu, Chien-Hung Shih, Yangfeng Su, Jia-Rong Tsai, Pei‐Pei Jhan, Cai-Sian Lia, Han‐Ni Chuang, Kuang-Hsi Chang, Chieh‐Lin Jerry Teng
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.641917

Luteolin Alleviates Methamphetamine-Induced Hepatotoxicity by Suppressing the p53 Pathway-Mediated Apoptosis, Autophagy, and Inflammation in Rats
Cited by: 10
Author(s): Kaikai Zhang, Hui Wang, Dong Qu, Lijian Chen, Libin Wang, Jiahao Li, Jiali Liu, Lingling Xu, Jamie Still Yoshida, Jian Xu, Xing Xie, Dong-Ri Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.03146

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts
Cited by: 35
Author(s): Meichen Pan, Claudio Hidalgo-Cantabrana, Yong Jun Goh, Rosemary Sanozky-Dawes, Rodolphe Barrangou
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00515

Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis
Cited by: 16
Author(s): Ritesh Mewalal, Hengfu Yin, Rongbin Hu, Sara Jawdy, Patrice Vion, Gerald A. Tuskan, François Le Tacon, Jessy Labbé, Xiaohan Yang
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.580547

Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection
Cited by: 7
Author(s): Sandra Pålsson, Aleksandra Dondalska, Joseph Bergenstråhle, Caroline Rolfes, Albin Björk, Laura Sedano, Ultan F. Power, Marie‐Anne Rameix‐Welti, Joakim Lundeberg, Marie Wahren‐Herlenius, Peter Mastrangelo, Jean-François Éléouët, Ronan Le Goffic, Marie Galloux, Anna-Lena Spetz
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12866-021-02304-0

The Mesorhizobium huakuii transcriptional regulator AbiEi plays a critical role in nodulation and is important for bacterial stress response
Cited by: 3
Author(s): Xiaohong Chen, Aiqi Hu, Qian Zou, Sha Luo, Hetao Wu, Chunxiao Yan, Tao Liu, Donglan He, Xiaohua Li, Guyue Cheng
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.601494

Transplacental Innate Immune Training via Maternal Microbial Exposure: Role of XBP1-ERN1 Axis in Dendritic Cell Precursor Programming
Cited by: 16
Author(s): Kyle T Mincham, Anya C. Jones, Marie Bodinier, Naomi M. Scott, Jean-François Lauzon-Joset, Philip A. Stumbles, Anthony Bosco, Patrick G. Holt, Deborah H. Strickland
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2019.00366

Altered Immune Landscape and Disrupted Coral-Symbiodinium Symbiosis in the Scleractinian Coral Pocillopora damicornis by Vibrio coralliilyticus Challenge
Cited by: 19
Author(s): Zhi Zhou, Shilei Zhao, Jia Tang, Zhaoqun Liu, Yibo Wu, Wang Yan, Senjie Lin
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2020.543962

Mitochondrial DNA Affects the Expression of Nuclear Genes Involved in Immune and Stress Responses in a Breast Cancer Model
Cited by: 5
Author(s): Carole Grasso, David Eccles, Štěpána Boukalová, Marie-Sophie Fabre, Rebecca H. Dawson, Jiřı́ Neužil, Patries M. Herst, Michael V. Berridge
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2020.578939

Transcriptomic Profiling of Various Developmental Stages of Aphis Aurantii to Provide a Genetic Resource for Gene Expression and SSR Analysis
Cited by: 3
Author(s): Feng Hong, Si-Hua Mo, Ying‐Hong Liu, Dong Wei
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2018.01845

Transcriptomic Characterization of a Chicken Embryo Model Infected With Duck Hepatitis A Virus Type 1
Cited by: 16
Author(s): Jinyan Xie, Qiurui Zeng, Mingshu Wang, Xumin Ou, Yunchao Ma, Anchun Cheng, Xinxin Zhao, Mafeng Liu, Dekang Zhu, Shun Chen, Renyong Jia, Qiao Yang, Ying Wu, Shaqiu Zhang, Yunya Liu, Yanling Yu, Ling Zhang, Xiaoyue Chen
Software Mentions: 1
Published: about 8 years ago

10.3390/nu12061586

Effect of a Multispecies Probiotic on Intestinal and Skin Colonization by Multidrug-Resistant Gram-Negative Bacteria in Patients in a Long-Term Care Facility: A Pilot Study
Cited by: 2
Author(s): Ines Zollner‐Schwetz, Monika Scarpatetti, Gerhard Pichler, Christian Pux, Ingeborg Klymiuk, Slave Trajanoski, Robert Krause
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12051395

Dietary Protein, Fiber and Coffee Are Associated with Small Intestine Microbiome Composition and Diversity in Patients with Liver Cirrhosis
Cited by: 10
Author(s): Shehnaz K. Hussain, Tien S. Dong, Vatche G. Agopian, Joseph R. Pisegna, Francisco Durazo, Pedram Enayati, Vinay Sundaram, Jihane N. Benhammou, Mazen Noureddin, Gina Choi, Walid Ayoub, Venu Lagishetty, David Elashoff, Marc T. Goodman, Jonathan P. Jacobs
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.00222

Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells
Cited by: 3
Author(s): Markus Zwick, Thomas Ulas, Yi-Li Cho, Christine Ried, Leonie Grosse, C. Robson Simon, Caroline Bernhard, Dirk H. Busch, Joachim L. Schultze, Veit R. Buchholz, Susanne Stutte, Thomas Brocker
Software Mentions: 1
Published: over 7 years ago

10.1038/s41396-020-0707-2

Physiological dynamics of chemosynthetic symbionts in hydrothermal vent snails
Cited by: 16
Author(s): Corinna Breusing, Jessica Mitchell, Jennifer A. Delaney, Sean P. Sylva, Jeffrey S. Seewald, Peter R. Girguis, Roxanne A. Beinart
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-021-02295-y

Skin microbiota dynamics following B. subtilis formulation challenge: an in vivo study in mice
Cited by: 5
Author(s): Veronica Moskovicz, Rina T. Greenblatt Ben-El, Guy Horev, Boaz Mizrahi
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2021.679919

Proerythroblast Cells of Diamond-Blackfan Anemia Patients With RPS19 and CECR1 Mutations Have Similar Transcriptomic Signature
Cited by: 3
Author(s): Beren Karaosmanoğlu, M. Alper Kursunel, Duygu Uçkan Çetinkaya, Fatma Gümrük, Güneş Esendağlı, Şule Ünal, Ekim Z. Taşkıran
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-017-0966-x

Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism
Cited by: 12
Author(s): Vijay Kumar Sharma, Darrell O. Bayles, David P. Alt, Torey Looft, Brian W. Brunelle, Judith A. Stasko
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2021.650331

Mast Cell and Eosinophil Activation Are Associated With COVID-19 and TLR-Mediated Viral Inflammation: Implications for an Anti-Siglec-8 Antibody
Cited by: 66
Author(s): Simon Gebremeskel, Julia Schanin, Krysta M. Coyle, Melina Butuci, Thuy T. Luu, Emily C. Brock, Xu Ao-ao, Alan Wong, John Leung, Wouter Korver, Ryan D. Morin, Robert P. Schleimer, Bruce S. Bochner, Brad Youngblood
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.536442

TNFAIP3 Plays a Role in Aging of the Hematopoietic System
Cited by: 11
Author(s): Molly A. Smith, Ashley E. Culver‐Cochran, Emmalee R. Adelman, Garrett W. Rhyasen, Averil Ma, María E. Figueroa, Daniel T. Starczynowski
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12866-019-1497-4

Exploring the tissue tropism of pseudorabies virus based on miRNA level analysis
Cited by: 1
Author(s): Fan Yu, Ling Zhu, Xiangang Sun, Wenting Lyu, Lei Xu, Yin Yuan, Jun Zhao, Jianbo Huang, Yichao Den, Zhiyi Jiang, Shiyao Xu, Mao Xiyu, Zhinan Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.01175

Evaluation of a Recombinant Flavobacterium columnare DnaK Protein Vaccine as a Means of Protection Against Columnaris Disease in Channel Catfish (Ictalurus punctatus)
Cited by: 16
Author(s): Miles D. Lange, Jason Abernathy, Bradley D. Farmer
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01311

“Small” Intestinal Immunopathology Plays a “Big” Role in Lethal Cytokine Release Syndrome, and Its Modulation by Interferon-γ, IL-17A, and a Janus Kinase Inhibitor
Cited by: 9
Author(s): Shiv D. Kale, Brittney N. Mehrkens, Molly M. Stegman, Bridget Kastelberg, Henry Carnes, Rachel J. McNeill, Amy Rizzo, Saikumar Karyala, Sheryl Coutermarsh-Ott, Jackie A. Fretz, Ying Sun, Jonathan L. Koff, Govindarajan Rajagopalan
Software Mentions: 1
Published: about 6 years ago

10.7150/ijbs.55873

The histone demethylase KDM2B regulates human primordial germ cell-like cells specification
Cited by: 4
Author(s): Weiyan Yuan, Zhaokai Yao, Veeramohan Veerapandian, Xinyan Yang, Xiaoman Wang, Dingyao Chen, Linzi Ma, Chaohui Li, Yi Zheng, Fang Luo, Xiaoyang Zhao
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.676644

Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors NR4A2 and NR4A3 Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response
Cited by: 6
Author(s): Donnacha Phelan, Masahiko Shigemura, Sarah Aldhafiri, Catarina Mota, Thomas J. Hall, Jacob I. Sznajder, Evelyn P. Murphy, Daniel Crean, Eoin P. Cummins
Software Mentions: 1
Published: about 5 years ago

10.7150/ijbs.58422

Long noncoding RNA SH3PXD2A-AS1 promotes colorectal cancer progression by regulating p53-mediated gene transcription
Cited by: 6
Author(s): Pingfu Hou, Tian Lin, Sen Meng, Meilin Shi, Fang Chen, Tao Jiang, Zhongwei Li, Minle Li, Sufang Chu, Junnian Zheng, Jing Bai
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-019-1462-2

Functional adaptations in the cecal and colonic metagenomes associated with the consumption of transglycosylated starch in a pig model
Cited by: 10
Author(s): Barbara U. Metzler‐Zebeli, Monica A. Newman, Dietmar Grüll, Qendrim Zebeli
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.677025

Biomarkers and Immune Repertoire Metrics Identified by Peripheral Blood Transcriptomic Sequencing Reveal the Pathogenesis of COVID-19
Cited by: 6
Author(s): Yang Liu, Yifan Wu, Bing Liu, Youpeng Zhang, Dan San, Chen Yu, Yu Zhou, Yu Liu, Hongtao Zeng, Yun Zhou, Fuxiang Zhou, Heng Yang, Lei Yin, Yafei Huang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2021.640898

Dietary Trivalent Chromium Exposure Up-Regulates Lipid Metabolism in Coral Trout: The Evidence From Transcriptome Analysis
Cited by: 11
Author(s): Wei Lu, Yu Liu, Hengzhen Ye, Juan Xiao, Christer Högstrand, Iain D. Green, Zhiqiang Guo, Dong Han
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-021-02214-1

Short-term physical exercise impacts on the human holobiont obtained by a randomised intervention study
Cited by: 19
Author(s): Lucas Moitinho‐Silva, Michelle Wegener, Sandra May, Florian Schrinner, Awais Akhtar, Teide Jens Boysen, Eva Schaeffer, Clint Hansen, Timo Schmidt, Malte Rühlemann, Matthias Hübenthal, Philipp Rausch, Mustafa T. Kondakci, Walter Maetzler, Stephan Weidinger, Matthias Laudes, Philip Süß, Dominik M. Schulte, Ralf Junker, Felix Sommer, Burkhard Weisser, Corinna Bang, André Franke
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2021.683056

Integrated Transcriptomic and Proteomic Analysis Reveals Up-Regulation of Apoptosis and Small Heat Shock Proteins in Lens of Rats Under Low Temperature
Cited by: 4
Author(s): Jie Zhou, Jing Wu, Shaokai Zheng, Xiangjun Chen, Daizhan Zhou, Xingchao Shentu
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02161

A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection
Cited by: 17
Author(s): Candice Poux, Aleksandra Dondalska, Joseph Bergenstråhle, Sandra Pålsson, Vanessa Contreras, Claudia Arasa, Peter Järver, Jan Albert, David C. Busse, R. Legrand, Joakim Lundeberg, John S. Tregoning, Anna-Lena Spetz
Software Mentions: 1
Published: about 7 years ago

10.7150/ijbs.58026

Deciphering the effects of PYCR1 on cell function and its associated mechanism in hepatocellular carcinoma
Cited by: 6
Author(s): Yijuan Xu, Wenpu Zuo, Xiao Wang, Qinle Zhang, Xiang Gan, Nguan Soon Tan, Wenxian Jia, Jiayi Liu, Zhouquan Li, Bo Zhou, Dong Zhao, Zhibin Xie, Yanjun Tan, Shu Zheng, Chengwu Liu, Hongtao Li, Zhijian Chen, Xiaoli Yang, Zhichuan Huang
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.58657

Protopanaxadiol improves endometriosis associated infertility and miscarriage in sex hormones receptors-dependent and independent manners
Cited by: 11
Author(s): Zhen‐Zhen Lai, Hui‐Li Yang, Jing Shi, Hui‐Hui Shen, Yan Wang, Kai‐Kai Chang, Tao Zhang, Jiang‐Feng Ye, Jiansong Sun, Xue Qiu, Ming‐Qing Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2021.624037

Transcriptomic Identification of Draxin-Responsive Targets During Cranial Neural Crest EMT
Cited by: 6
Author(s): Erica J. Hutchins, Michael L. Piacentino, Marianne E. Bronner
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-018-0897-x

Vitexin compound 1, a novel extraction from a Chinese herb, suppresses melanoma cell growth through DNA damage by increasing ROS levels
Cited by: 48
Author(s): Nian Liu, Kuan Song Wang, Min Qi, Ying Zhou, Guang Zeng, Juan Tao, Jiayi Zhou, Jiang Lin Zhang, Xiang Chen, Cong Peng
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2020.00885

A Comparative Study on Growth and Metabolism of Eriocheir sinensis Juveniles Under Chronically Low and High pH Stress
Cited by: 7
Author(s): Xiaodan Wang, Zhaohui Huang, Chunling Wang, Qi Cui, Zhenxin Gu, Erchao Li, Jianguang Qin, Liqiao Chen
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2019.00699

HIF-1α Stabilization Increases miR-210 Eliciting First Trimester Extravillous Trophoblast Mitochondrial Dysfunction
Cited by: 27
Author(s): Lauren Anton, Ann DeVine, Erzsébet Polyák, Anthony O. Olarerin-George, Amy G. Brown, Marni J. Falk, Michal A. Elovitz
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.00755

Phenotypic and Transcriptomic Analysis of Peripheral Blood Plasmacytoid and Conventional Dendritic Cells in Early Drug Naïve Rheumatoid Arthritis
Cited by: 26
Author(s): Faye A H Cooles, Amy E. Anderson, Andrew Skelton, Arthur G. Pratt, Mariola Kurowska‐Stolarska, Iain B. McInnes, Catharien M. U. Hilkens, John D. Isaacs
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.630037

Transcriptomic and Metabolomic Analyses of Diaphorina citri Kuwayama Infected and Non-infected With Candidatus Liberibacter Asiaticus
Cited by: 6
Author(s): Kai Liu, Jiawei He, Ziying Guan, Mingzhao Zhong, Rui Pang, Qunxin Han
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.588082

Transcriptomic Analyses Reveal the Protective Immune Regulation of Conjugated Linoleic Acids in Sheep Ruminal Epithelial Cells
Cited by: 10
Author(s): Chunlei Yang, Wei Lan, Shijie Ye, Binna Zhu, Zhengwei Fu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2019.02498

Peptides Derived of Kunitz-Type Serine Protease Inhibitor as Potential Vaccine Against Experimental Schistosomiasis
Cited by: 18
Author(s): Juan Hernández-Goenaga, Julio López‐Abán, Anna V. Protasio, Belén Vicente Santiago, Esther del Olmo, Magnolia Vanegas, Pedro Fernández‐Soto, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.00405

Transcriptomic Analysis of Monocyte-Derived Non-Phagocytic Macrophages Favors a Role in Limiting Tissue Repair and Fibrosis
Cited by: 23
Author(s): Sergei Butenko, Senthil Kumaran Satyanarayanan, Simaan Assi, Sagie Schif-Zuck, Dalit Barkan, Noa Sher, Amiram Ariel
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2017.00748

Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance
Cited by: 38
Author(s): Eirini Nikolouli, Matthias Hardtke‐Wolenski, Martin Hapke, Michael Beckstette, Robert Geffers, Stefan Floess, Elmar Jaeckel, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2021.648056

Gestational Low Protein Diet Modulation on miRNA Transcriptome and Its Target During Fetal and Breastfeeding Nephrogenesis
Cited by: 2
Author(s): Letícia de Barros Sene, Gabriela Leme Lamana, André Schwambach Vieira, Wellerson Rodrigo Scarano, José Antônio Rocha Gontijo, Patrícia Aline Bôer
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-019-1578-4

Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds
Cited by: 6
Author(s): Thorsten Bufe, André Hennig, Jochen Klumpp, Agnes Weiß, Kay Nieselt, Herbert Schmidt
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2020.565307

Identification of Potentially Relevant Genes for Excessive Exercise-Induced Pathological Cardiac Hypertrophy in Zebrafish
Cited by: 6
Author(s): Zuoqiong Zhou, Lan Zheng, Cui Tang, Zhanglin Chen, Runkang Zhu, Xiyang Peng, Xiushan Wu, Ping Zhu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2019.01568

Comparative Transcriptome Analysis of the Heat Stress Response in Monochamus alternatus Hope (Coleoptera: Cerambycidae)
Cited by: 27
Author(s): Hui Li, Xinyi Zhao, Heng Qiao, Xuanyu He, Jiajin Tan, Dejun Hao
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1032-3

PAGE4 promotes prostate cancer cells survive under oxidative stress through modulating MAPK/JNK/ERK pathway
Cited by: 18
Author(s): Chengcheng Lv, Shui Fu, Qingzhuo Dong, Zi Yu, Gejun Zhang, Chuize Kong, Cheng Fu, Yu Zeng
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2021.660402

Acute Effects on the Human Peripheral Blood Transcriptome of Decompression Sickness Secondary to Scuba Diving
Cited by: 8
Author(s): Kurt Magri, Ingrid Eftedal, Vanessa Petroni Magri, Lyubisa Matity, Charles Paul Azzopardi, Stephen Muscat, Nikolai Paul Pace
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-020-01873-w

Genome sequence and spore germination-associated transcriptome analysis of Corynespora cassiicola from cucumber
Cited by: 10
Author(s): Shigang Gao, Rong Zeng, Lihui Xu, Zhiwei Song, Ping Gao, Fangyin Dai
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.624753

Exosomes Derived From Heat Stroke Cases Carry miRNAs Associated With Inflammation and Coagulation Cascade
Cited by: 9
Author(s): Yue Li, Qiang Wen, Huaisheng Chen, Xinhui Wu, Bin Liu, Hui Li, Lei Su, Huasheng Tong
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.02056

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)—A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes
Cited by: 30
Author(s): Karolina Chwiałkowska, Urszula Korotko, Joanna Kosińska, Iwona Szarejko, Mirosław Kwaśniewski
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2021.664792

Alternative Oxidase Inhibition Impairs Tobacco Root Development and Root Hair Formation
Cited by: 3
Author(s): Yang Liu, Lulu Yu, Peng Ye, Geng Xinxin, Fei Xu
Software Mentions: 1
Published: about 5 years ago

10.3390/nu13061837

Foxtail Millet Improves Blood Glucose Metabolism in Diabetic Rats through PI3K/AKT and NF-κB Signaling Pathways Mediated by Gut Microbiota
Cited by: 25
Author(s): Xin Ren, Linxuan Wang, Zenglong Chen, Dianzhi Hou, Yong Xue, Xianmin Diao, Qun Shen
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2019.01341

Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus
Cited by: 6
Author(s): Rubina Jibran, Jessica Spencer, Gina E. Fernandez, Amparo Monfort, Mourad Mnejja, Helge Dzierzon, Jibran Tahir, Kevin Davies, David Chagné, Toshi Foster
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.598483

Variation Between Three Eragrostis tef Accessions in Defense Responses to Rhopalosiphum padi Aphid Infestation
Cited by: 6
Author(s): Nathan M Gyan, Beery Yaakov, Nati Weinblum, Anuradha Singh, Alon Cna’ani, Shiran Ben‐Zeev, Yehoshua Saranga, Vered Tzin
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-019-1241-9

Minichromosome maintenance 3 promotes hepatocellular carcinoma radioresistance by activating the NF-κB pathway
Cited by: 29
Author(s): Qing Yang, Binhui Xie, Hui Tang, Meng Wang, Changchang Jia, Xiaomei Zhang, Yi Zhang, Jianwen Zhang, Heping Li, Binsheng Fu
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.623610

Therapeutic Potential of TNFα and IL1β Blockade for CRS/ICANS in CAR-T Therapy via Ameliorating Endothelial Activation
Cited by: 15
Author(s): Yunshuo Chen, Ranran Li, Siqi Shang, Xiaofeng Yang, Lei Li, Wenbo Wang, Yueying Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.01290

T Cell Receptor–Major Histocompatibility Complex Interaction Strength Defines Trafficking and CD103+ Memory Status of CD8 T Cells in the Brain
Cited by: 12
Author(s): Anna Smerdel-Ramoya, Norimasa Yoshida, Elizabeth Motunrayo Kolawole, Harshil Patel, Brian D. Evavold, Eva‐Maria Frickel
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.01574

Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici
Cited by: 20
Author(s): Sowmya Ramachandran, Nicholas A. Mueth, Ping Zheng, Scot H. Hulbert
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.664619

Low Innate Immunity and Lagged Adaptive Immune Response in the Re-Tested Viral RNA Positivity of a COVID-19 Patient
Cited by: 5
Author(s): Changchun Lai, Xinglong Liu, Qihong Yan, Hualiang Lv, Lei Zhou, Lirong Hu, Yong Cai, Guoqiang Wang, Yufeng Chen, Renjie Chai, Zhenwei Liu, Yaobo Xu, Wendong Huang, Fei Xiao, Linhui Hu, Yaocai Li, Jianhong Huang, Qiang Zhou, Luqian Li, Tao Peng, Haiye Zhang, Zhenhui Zhang, Ling Chen, Chunbo Chen, Tianxing Ji
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2020.00776

Identification of QTLs Containing Resistance Genes for Sclerotinia Stem Rot in Brassica napus Using Comparative Transcriptomic Studies
Cited by: 31
Author(s): Muhammad Uzair Qasim, Qing Zhao, Muhammad Shahid, Rana Abdul Samad, Sunny Ahmar, Jian Wu, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1427-1

Impact of Docetaxel on blood-brain barrier function and formation of breast cancer brain metastases
Cited by: 9
Author(s): Simon Bernatz, Elena I. Ilina, Kavi Devraj, Patrick N. Harter, Klaus Mueller, Sascha Kleber, Yannick Braun, Cornelia Penski, Christoph Renner, Rashi Halder, Lukas Jennewein, Christine Solbach, Frits Thorsen, Bernhard Paulweber, Axel Mischo, Michel Mittelbronn
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.01188

Plant Immune System Activation Upon Citrus Leprosis Virus C Infection Is Mimicked by the Ectopic Expression of the P61 Viral Protein
Cited by: 13
Author(s): Gabriella Dias Arena, Pedro Luis Ramos-González, Bryce W. Falk, Clare L. Casteel, Juliana Freitas-Astúa, Marcos Antônio Machado
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.00446

Extracellular Vesicles Mediate Mesenchymal Stromal Cell-Dependent Regulation of B Cell PI3K-AKT Signaling Pathway and Actin Cytoskeleton
Cited by: 60
Author(s): Annalisa Adamo, Jessica Brandi, Simone Caligola, Pietro Delfino, Ilaria Tanasi, Roberta Carusone, Daniela Cecconi, Rosalba Giugno, Marcello Manfredi, Elisa Robotti, Emílio Marengo, Giulio Bassi, Paul Takam Kamga, Giada Dal Collo, Alessandro Gatti, Angela Mercuri, Maddalena Arigoni, Martina Olivero, Raffaele Calogero, Mauro Krampera
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.660226

Exogenous Gene Expression and Insect Resistance in Dual Bt Toxin Populus × euramericana ‘Neva’ Transgenic Plants
Cited by: 11
Author(s): Yachao Ren, Xinglu Zhou, Yan Dong, Jun Zhang, Jinmao Wang, Minsheng Yang
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200246

Temperature modulates immune gene expression in mosquitoes during arbovirus infection
Cited by: 18
Author(s): B. M. C. Randika Wimalasiri-Yapa, Roberto A. Barrero, Liesel Stassen, Louise M. Hafner, Elizabeth A. McGraw, Alyssa T. Pyke, Cassie C. Jansen, Andreas Suhrbier, Laith Yakob, Wenbiao Hu, Gregor J. Devine, Francesca D. Frentiu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.01064

Unraveling the Transcriptional Basis of Temperature-Dependent Pinoxaden Resistance in Brachypodium hybridum
Cited by: 16
Author(s): Maor Matzrafi, Lidor Shaar-Moshe, Baruch Rubin, Zvi Peleg
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2021.629089

Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.)
Cited by: 14
Author(s): Martina Kintlová, Jan Vrána, Roman Hobza, Nicolas Blavet, Vojtěch Hudzieczek
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.695373

Identification of Genes Encoding Antimicrobial Proteins in Langerhans Cells
Cited by: 0
Author(s): Aislyn Oulee, Feiyang Ma, Rosane M. B. Teles, Bruno Jorge de Andrade Silva, Matteo Pellegrini, Eynav Klechevsky, Andrew N. Harman, Jake W. Rhodes, Robert L. Modlin
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.632788

Association Mapping and Transcriptome Analysis Reveal the Genetic Architecture of Maize Kernel Size
Cited by: 3
Author(s): Jian Ma, Lifeng Wang, Yongsong Cao, Hao Wang, Huiyong Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.00370

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii
Cited by: 22
Author(s): Marina Puigvert, Rodrigo Guarischi-Sousa, Paola Zuluaga, Núria S. Coll, Alberto P. Macho, João Carlos Setúbal, Marc Valls
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.00672

Analysis of Dynamic Global Transcriptional Atlas Reveals Common Regulatory Networks of Hormones and Photosynthesis Across Nicotiana Varieties in Response to Long-Term Drought
Cited by: 13
Author(s): Jing Wang, Shihua Zhang, Yunpeng Fu, Tiantian He, Xuewen Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.698565

p16INK4a Regulates Cellular Senescence in PD-1-Expressing Human T Cells
Cited by: 13
Author(s): Valérie Janelle, Mathieu Neault, Marie-Ève Lebel, Dave Maurice De Sousa, Salix Boulet, Ludovic Durrieu, Cédric Carli, Chloé Muzac, Sébastien Lemieux, Nathalie Labrecque, Heather J. Melichar, Frédérick A. Mallette, Jean-Sébastien Delisle
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.686462

Enhanced Expression of Autoantigens During SARS-CoV-2 Viral Infection
Cited by: 17
Author(s): Narjes Saheb Sharif-Askari, Fatemeh Saheb Sharif-Askari, Samrein B M Ahmed, Suad Hannawi, Rifat Hamoudi, Qutayba Hamid, Rabih Halwani
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-020-01815-4

Impact of the acidic environment on gene expression and functional parameters of tumors in vitro and in vivo
Cited by: 13
Author(s): Mandy Rauschner, Luisa Lange, Thea Hüsing, Sarah Reime, Alexander Nolze, Marcel Maschek, Oliver Thews, Anne Riemann
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.590870

The Neat Dance of COVID-19: NEAT1, DANCR, and Co-Modulated Cholinergic RNAs Link to Inflammation
Cited by: 32
Author(s): Chanan Meydan, Nimrod Madrer, Hermona Soreq
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-021-01875-0

A preliminary study of micro-RNAs as minimally invasive biomarkers for the diagnosis of prostate cancer patients
Cited by: 16
Author(s): Simona Giglio, Cosimo De Nunzio, Roberto Cirombella, Antonella Stoppacciaro, Omar Faruq, Stefano Volinia, Gustavo Baldassarre, Andrea Tubaro, Hideshi Ishii, Carlo M. Croce, Andrea Vecchione
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.01791

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus
Cited by: 26
Author(s): Azahara C. Martín, Philippa Borrill, Janet Higgins, Abdul Kader Alabdullah, Ricardo H. Ramírez-González, David Swarbreck, Cristóbal Uauy, Peter Shaw, Graham Moore
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2021.713704

IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells
Cited by: 3
Author(s): Wissam Charab, Matthew G. Rosenberger, Haridha Shivram, Justin Mirazee, Moses Donkor, Soumya Shekhar, Donjeta Gjuka, Kimberly H. Khoo, Jin Eyun Kim, Vishwanath R. Iyer, George Georgiou
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.02505

Precise Delineation and Transcriptional Characterization of Bovine Blood Dendritic-Cell and Monocyte Subsets
Cited by: 22
Author(s): Stephanie C. Talker, Arnaud Baumann, G. Tuba Barut, Irene Keller, Rémy Bruggmann, Artur Summerfield
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2020.00255

Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset
Cited by: 9
Author(s): Ahmed Abidi, Thomas Laurent, Gaëlle Bériou, Laurence Bouchet-Delbos, Cynthia Fourgeux, Cédric Louvet, Raja Marrakchi, Jérémie Poschmann, Régis Josien, Jérôme C. Martin
Software Mentions: 1
Published: over 6 years ago

10.1098/rsob.200182

Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome
Cited by: 4
Author(s): Siriluck Ponsuksili, Michael Oster, Henry Reyer, Frieder Hadlich, Nares Trakooljul, M. Rodehutscord, Amélia Camarinha‐Silva, Jörn Bennewitz, Klaus Wimmers
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-020-01894-5

Evaluation of fecal DNA extraction protocols for human gut microbiome studies
Cited by: 18
Author(s): Mi Young Lim, Yong Soo Park, Jung-Ha Kim, Young-Do Nam
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2019.00562

GmMYB176 Regulates Multiple Steps in Isoflavonoid Biosynthesis in Soybean
Cited by: 20
Author(s): Arun Kumaran Anguraj Vadivel, Justin B. Renaud, Sateesh Kagale, Sangeeta Dhaubhadel
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.690857

Insights Into the Mechanisms Implicated in Pinus pinaster Resistance to Pinewood Nematode
Cited by: 12
Author(s): Inês Modesto, Lieven Sterck, Vicent Arbona, Isabel Carrasquinho, Yves Van de Peer, Celia María Gonzalo Miguel
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.01905

RNA-seq Profiling Reveals Defense Responses in a Tolerant Potato Cultivar to Stem Infection by Pectobacterium carotovorum ssp. brasiliense
Cited by: 16
Author(s): Stanford Kwenda, Tshepiso V. Motlolometsi, Paul R. J. Birch, Lucy N. Moleleki
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2019.00907

Molecular Pathways Mediating Immunosuppression in Response to Prolonged Intensive Physical Training, Low-Energy Availability, and Intensive Weight Loss
Cited by: 28
Author(s): Heikki V. Sarin, Ivan Gudelj, Jarno Honkanen, Johanna K. Ihalainen, Arja Vuorela, Joseph H. Lee, Zhi Jin, Joseph D. Terwilliger, Ville Isola, Juha P. Ahtiainen, Keijo Häkkinen, Julija Jurić, Gordan Lauc, Kati Kristiansson, Juha J. Hulmi, Markus Perola
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-018-1352-z

The spent culture supernatant of Pseudomonas syringae contains azelaic acid
Cited by: 11
Author(s): Sree Gowrinadh Javvadi, Paola Cescutti, Roberto Rizzo, Valentina Lonzarich, Luciano Navarini, Danilo Licastro, Corrado Guarnaccia, Vittorio Venturi
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2020.00888

Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon miscellus (Asteraceae)
Cited by: 17
Author(s): Shengchen Shan, J. Lucas Boatwright, Xiaoxian Liu, André S. Chanderbali, Chao‐Nan Fu, Pamela S. Soltis, Douglas E. Soltis
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00491

Patterns of Sequence and Expression Diversification Associate Members of the PADRE Gene Family With Response to Fungal Pathogens
Cited by: 7
Author(s): Marie Didelon, Mehdi Khafif, Laurence Godiard, Adelin Barbacci, Sylvain Raffaele
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-021-00957-4

Robust biomarker discovery for hepatocellular carcinoma from high-throughput data by multiple feature selection methods
Cited by: 13
Author(s): Zishuang Zhang, Zhi-Ping Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2018.00230

Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance
Cited by: 27
Author(s): Claire L. Riggs, Amanda Summers, Daniel E. Warren, Göran Nilsson, Sjannie Lefevre, W. Wesley Dowd, Sarah L. Milton, Jason E. Podrabsky
Software Mentions: 1
Published: about 8 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning DESeq2 9,583