bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1155/2021/9920364

Synergistic Regulation of Microglia Gene Expression by Natural Molecules in Herbal Medicine
Cited by: 3
Author(s): Qiburi Qiburi, Temuqile Temuqile, Huricha Baigude
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/7182865

Sensitive Biomarker Analysis of Xue-Fu-Zhu-Yu Capsule for Patients with Qi Stagnation and Blood Stasis Pattern: A Nested Case-Control Study
Cited by: 1
Author(s): Guang Chen, Hong He, Kun Hu, Jialiang Gao, Jun Li, Mei Han, Jie Wang
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/6637513

Transcriptome Profiling of Human Follicle Dermal Papilla Cells in response to Porphyra-334 Treatment by RNA-Seq
Cited by: 6
Author(s): Su Yeon Kim, Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sung Joo Jang, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: over 5 years ago

10.1111/eva.12487

Transcriptional mechanisms underlying life-history responses to climate change in the three-spined stickleback
Cited by: 22
Author(s): Sin‐Yeon Kim, María M. Costa, Anna Esteve‐Codina, Alberto Velando
Software Mentions: 1
Published: over 9 years ago

10.1111/eva.13129

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere
Cited by: 11
Author(s): Erik Kjærner-Semb, Rolf B. Edvardsen, Fernando Ayllón, Petra Vogelsang, Tomasz Furmanek, Carl-Johan Rubin, А. Е. Веселов, Tom Ole Nilsen, Stephen D. McCormick, Craig R. Primmer, Anna Wargelius
Software Mentions: 1
Published: almost 6 years ago

10.1111/eva.13162

The molecular mechanisms that determine different degrees of polyphagy in the <i>Bemisia tabaci</i> species complex
Cited by: 11
Author(s): Osnat Malka, Ester Feldmesser, Sharon van Brunschot, Diego Santos-García, Wenfeng Han, Susan Seal, John Colvin, Shai Morin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s12276-020-0425-x

The interdependence of mammary-specific super-enhancers and their native promoters facilitates gene activation during pregnancy
Cited by: 1
Author(s): Xianke Zeng, Hye Kyung Lee, Chaochen Wang, Precious Achikeh, Chengyu Liu, Lothar Hennighausen
Software Mentions: 1
Published: over 6 years ago

10.1038/s12276-019-0352-x

Bach2 deficiency leads autoreactive B cells to produce IgG autoantibodies and induce lupus through a T cell-dependent extrafollicular pathway
Cited by: 44
Author(s): Eunkyeong Jang, Un Kyo Kim, Kiseok Jang, Young Soo Song, Ji Young, Hansol Yi, Jeehee Youn
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40662-020-00221-3

The critical role of m6A methylation in the pathogenesis of Graves' ophthalmopathy
Cited by: 13
Author(s): Liangru Zhu, Siyan Li, Shikun He, Qizhe Tong, Lejin Wang, Xiaohua Li, Xi Wu, Qingyu Meng, Enzhong Jin, Chuan Zhang, Tianyuan Li, Ningda Xu, Lvzhen Huang, Yi Wang, Mingwei Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1096/fj.201701098R

Analysis of chromatin accessibility in decidualizing human endometrial stromal cells
Cited by: 28
Author(s): Pavle Vrljicak, Emma S. Lucas, Lauren Lansdowne, Raffaella Lucciola, Joanne Muter, Nigel P. Dyer, Jan J. Brosens, Sascha Ott
Software Mentions: 1
Published: over 8 years ago

10.1002/2211-5463.13132

Dkk1 inhibits malignant transformation induced by Bmi1 via the β‐catenin signaling axis in WB‐F344 oval cells
Cited by: 2
Author(s): Jinjun Ye, Le Xin, Jidong Liu, Tao Tang, Xiaoyong Bao, Yukuang Yan
Software Mentions: 1
Published: over 5 years ago

10.1002/2211-5463.13019

Methylthioadenosine (MTA) boosts cell‐specific productivities of Chinese hamster ovary cultures: dosage effects on proliferation, cell cycle and gene expression
Cited by: 2
Author(s): Natascha Verhagen, Julia Zieringer, Ralf Takors
Software Mentions: 1
Published: almost 6 years ago

10.1002/2211-5463.13076

Gene expression profile of human follicle dermal papilla cells in response to <i>Camellia japonica</i> phytoplacenta extract
Cited by: 3
Author(s): Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sooyun Kim, Hyo Hyun Seo, Jihyeok Song, Ok Hwa Lee, Jiae Min, Sang Jun Lee, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: over 5 years ago

10.1093/femsec/fiy095

Cold adaptation and replicable microbial community development during long-term low-temperature anaerobic digestion treatment of synthetic sewage
Cited by: 25
Author(s): Ciara Keating, Dermot Hughes, Thérèse Mahony, Denise Cysneiros, Umer Zeeshan Ijaz, Colette Smith, Vincent O'Flaherty
Software Mentions: 1
Published: over 8 years ago

10.1186/s12987-021-00255-2

Reduction in pericyte coverage leads to blood–brain barrier dysfunction via endothelial transcytosis following chronic cerebral hypoperfusion
Cited by: 32
Author(s): Zhengyu Sun, Chenhao Gao, Dandan Gao, Ruihua Sun, Wei Li, Feng‐Yu Wang, Yanliang Wang, Huixia Cao, Guoyu Zhou, Jiewen Zhang, Junkui Shang
Software Mentions: 1
Published: over 5 years ago

10.1080/20961790.2017.1349639

RNA-seq profiling reveals differentially expressed genes as potential markers for vital reaction in skin contusion: a pilot study
Cited by: 17
Author(s): Jian Xu, Rui Zhao, Ye Xue, Huan-Qin Xiao, Yanliang Sheng, Dong Zhao, Jie-Tao He, Hongyan Huang, Qi Wang, Huijun Wang
Software Mentions: 1
Published: about 9 years ago

10.1016/j.freeradbiomed.2020.10.322

The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureus
Cited by: 22
Author(s): Verena Nadin Fritsch, Vu Van Loi, Tobias Busche, Quach Ngoc Tung, Roland Lill, Petra Horvatek, Christiane Wolz, Jörn Kalinowski, Haike Antelmann
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnagi.2020.576678

Longitudinal Characterization of Transcriptomic, Functional, and Morphological Features in Human iPSC-Derived Neurons and Their Application to Investigate Translational Progranulin Disease Biology
Cited by: 3
Author(s): Gaëlle Robin, J. C. Evans, David N. Hauser, Paul Wren, Andreas Zembrzycki
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnbeh.2021.678102

Adolescent Stress Reduces Adult Morphine-Induced Behavioral Sensitization in C57BL/6J Mice
Cited by: 4
Author(s): Helen M. Kamens, Carley N. Miller, Jasmine I. Caulfield, Dana Zeid, W. J. Horton, Constanza P. Silva, Aswathy Sebastian, István Albert, Thomas J. Gould, Diana Fishbein, Patricia S. Grigson, Sonia A. Cavigelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2019.00438

Identification of PGRMC1 as a Candidate Oncogene for Head and Neck Cancers and Its Involvement in Metabolic Activities
Cited by: 15
Author(s): Yue Zhao, Xiangyan Ruan
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2020.00809

Single-Sample Node Entropy for Molecular Transition in Pre-deterioration Stage of Cancer
Cited by: 7
Author(s): Chongyin Han, Jiayuan Zhong, Jiaqi Hu, Huisheng Liu, Rui Li, Fei Ling
Software Mentions: 1
Published: about 6 years ago

10.3389/fbioe.2019.00249

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger
Cited by: 19
Author(s): Ronnie J.M. Lubbers, Adiphol Dilokpimol, Jorge C. Navarro-Muñoz, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Jaap Visser, Kristiina Hildén
Software Mentions: 1
Published: almost 7 years ago

10.3389/fbioe.2020.00490

The Construction and Analysis of lncRNA–miRNA–mRNA Competing Endogenous RNA Network of Schwann Cells in Diabetic Peripheral Neuropathy
Cited by: 17
Author(s): Wang Cheng, Xiang Xu, Jing Chen, Yu Kang, Jiahe Guo, Dominik Duscher, Xiaofan Yang, Guojun Guo, Sen Ren, Hairong Xiong, Meng Yuan, Tao Jiang, Hans‐Günther Machens, Zhenbing Chen, Yanhua Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.644261

Using Cell Type–Specific Genes to Identify Cell-Type Transitions Between Different in vitro Culture Conditions
Cited by: 0
Author(s): Xuelin He, Li Liu, Min Zheng, Chao Wu
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2021.636834

Transcriptomic and Metabolomic Analysis Revealed Roles of Yck2 in Carbon Metabolism and Morphogenesis of Candida albicans
Cited by: 10
Author(s): Karl Liboro, Seong Ryong Yu, Jae-Hwan Lim, Yee Seul So, Yong-Sun Bahn, Hyungjin Eoh, Hyun‐Sook Park
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2020.00434

Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation
Cited by: 19
Author(s): Jie Zhou, Yu Zhang, Ping Cui, Lijia Luo, Hui Chen, Bingyu Liang, Junjun Jiang, Chuanyi Ning, Tian Liang, Xiaodan Zhong, Ye Li, Linlin Hao, Jiegang Huang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2018.00370

Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT)
Cited by: 8
Author(s): Magdalena Franco, Patrik D’haeseleer, Steven S. Branda, Megan J. Liou, Yasmeen Haider, Brent W. Segelke, Sahar H. El-Etr
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2021.704919

Expression Profiles and Potential Functions of Long Non-Coding RNAs in the Heart of Mice With Coxsackie B3 Virus-Induced Myocarditis
Cited by: 6
Author(s): Xiang Nie, Huihui Li, Jin Wang, Yuanyuan Cai, Jiahui Fan, Bingbing Dai, Chen Chen, Dao Wen Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2020.592864

Treponemapallidum Dysregulates Monocytes and Promotes the Expression of IL-1β and Migration in Monocytes Through the mTOR Signaling Pathway
Cited by: 2
Author(s): Wen-Na Liu, Xiaoyong Jiang, Yan-Zhu Xu, Xuxu Sun, Kaixuan Wu, Xinlin Hu, Yong Lin, Li‐Rong Lin, Man‐Li Tong, Li‐Li Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.696533

Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study
Cited by: 1
Author(s): Mia K. Mihailovic, Alyssa Ekdahl, Angela Chen, Abigail N. Leistra, Bridget Li, Javier González Martínez, Matthew Law, Cindy Ejindu, Éric Massé, Peter L. Freddolino, Lydia M. Contreras
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2020.607470

Profiling the Blood Compartment of Hematopoietic Stem Cell Transplant Patients During Human Cytomegalovirus Reactivation
Cited by: 4
Author(s): Biana Bernshtein, Aharon Nachshon, Miri Shnayder, Lauren Stern, Selmir Avdic, Emily Blyth, David Gottlieb, Allison Abendroth, Barry Slobedman, Noam Stern-Ginossar, Michal Schwartz
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2019.00405

MTS1338, A Small Mycobacterium tuberculosis RNA, Regulates Transcriptional Shifts Consistent With Bacterial Adaptation for Entering Into Dormancy and Survival Within Host Macrophages
Cited by: 20
Author(s): Elena G. Salina, Artem Grigorov, Yulia V. Skvortsova, Konstantin Majorov, Oksana S. Bychenko, Albina Ostrik, Н. Н. Логунова, Dmitriy Ignatov, Arseny S. Kaprelyants, А. С. Апт, Tatyana Azhikina
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2019.00347

Species-Level Salivary Microbial Indicators of Well-Resolved Periodontitis: A Preliminary Investigation
Cited by: 25
Author(s): Aneesha Acharya, Tsute Chen, Yuen-Yan Chan, RM Watt, Lijian Jin, Nikos Mattheos
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2018.00045

Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira
Cited by: 20
Author(s): Haritha Adhikarla, Elsio A. Wunder, A.E. Mechaly, Sameet Mehta, Zheng Wang, Luciane Amorim Santos, Vimla Bisht, Peter J. Diggle, Gerald L Murray, Ben Adler, F. J. Lopez, Jeffrey P. Townsend, Eduardo A. Groisman, Mathieu Picardeau, Alejandro Buschiazzo, Albert I. Ko
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2020.586946

ROP18-Mediated Transcriptional Reprogramming of HEK293T Cell Reveals New Roles of ROP18 in the Interplay Between Toxoplasma gondii and the Host Cell
Cited by: 6
Author(s): Jiexi Li, Jun-Jun He, Hany M. Elsheikha, Jun Ma, Xiaoqing Xu, Xingquan Zhu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2017.00451

Reduced Intracellular c-di-GMP Content Increases Expression of Quorum Sensing-Regulated Genes in Pseudomonas aeruginosa
Cited by: 52
Author(s): Song Lin Chua, Yang Liu, Yingying Li, Hui Jun Ting, Gurjeet S. Kohli, Zhao Cai, Pipob Suwanchaikasem, Kelvin Kau Kit Goh, Sean Pin Ng, Tim Tolker‐Nielsen, Liang Yang, Michael Givskov
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcimb.2019.00354

Gene Expression Profiling of Neospora caninum in Bovine Macrophages Reveals Differences Between Isolates Associated With Key Parasite Functions
Cited by: 11
Author(s): Marta García-Sánchez, Laura Jiménez-Pelayo, Pilar Horcajo, Javier Regidor‐Cerrillo, Esther Collantes-Fernández, Luís Miguel Ortega-Mora
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2020.586592

miR-1207-5p Can Contribute to Dysregulation of Inflammatory Response in COVID-19 via Targeting SARS-CoV-2 RNA
Cited by: 30
Author(s): Giorgio Bertolazzi, Chiara Cipollina, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.668859

Congenital Asplenia Interrupts Immune Homeostasis and Leads to Excessive Systemic Inflammation in Zebrafish
Cited by: 4
Author(s): Lang Xie, Zhe-Yu Chen, Hui Guo, Yixi Tao, Xiaomin Miao, Ronghua Wu, Yun Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2019.00272

Resuscitation of Dormant “Non-culturable” Mycobacterium tuberculosis Is Characterized by Immediate Transcriptional Burst
Cited by: 26
Author(s): Elena G. Salina, Artem Grigorov, Oksana S. Bychenko, Yulia V. Skvortsova, Ilgar Z. Mamedov, Tatyana Azhikina, Arseny S. Kaprelyants
Software Mentions: 1
Published: about 7 years ago

10.3389/fncel.2021.718720

Structural and Lipidomic Alterations of Striatal Myelin in 16p11.2 Deletion Mouse Model of Autism Spectrum Disorder
Cited by: 5
Author(s): Jun Ju, Xiuyan Yang, Jian Jiang, Dilong Wang, Yumeng Zhang, Xiaofeng Zhao, Xiaoyi Fang, Huanquan Liao, Lei Zheng, Shupeng Li, Sheng T. Hou, Liyang Liang, Yihang Pan, Hui‐Liang Li, Ningning Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2019.00944

Transcriptional Analysis of Sepsis-Induced Activation and Damage of the Adrenal Endothelial Microvascular Cells
Cited by: 11
Author(s): Lansun Chen, Sumeet Pal Singh, Gregor Müller, Stefan R. Bornstein, Waldemar Kanczkowski
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2021.603645

High Glucose Causes Distinct Expression Patterns of Primary Human Skin Cells by RNA Sequencing
Cited by: 6
Author(s): Shan Zhang, Zunxiang Ke, Chao Yang, Peng Zhou, Huanhuan Jiang, Lei Chen, Yiqing Li, Qin Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2021.730947

Morphologic and Molecular Characterization of Adrenals and Adrenal Rest Affected by Congenital Adrenal Hyperplasia
Cited by: 4
Author(s): Vipula Kolli, Isabela Werneck da Cunha, SunA Kim, James R. Iben, Ashwini Mallappa, Tianwei Li, Alison R. Gaynor, Steven L. Coon, Martha Quezado, Deborah P. Merke
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2021.685060

RANKL-Induced Btn2a2 – A T Cell Immunomodulatory Molecule – During Osteoclast Differentiation Fine-Tunes Bone Resorption
Cited by: 3
Author(s): Michael Frech, G. Schuster, Fabian T. Andes, Georg Schett, Mario M. Zaiss, Kerstin Sarter
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2019.00715

Global Transcriptomic Analysis of the Canine corpus luteum (CL) During the First Half of Diestrus and Changes Induced by in vivo Inhibition of Prostaglandin Synthase 2 (PTGS2/COX2)
Cited by: 6
Author(s): Miguel Tavares Pereira, Felix R Graubner, Hubert Rehrauer, Tomasz Janowski, Bernd Hoffmann, Alois Boos, Mariusz P. Kowalewski
Software Mentions: 1
Published: almost 7 years ago

10.3389/fendo.2020.596898

SARS-CoV-2 Receptor Angiotensin I-Converting Enzyme Type 2 (ACE2) Is Expressed in Human Pancreatic β-Cells and in the Human Pancreas Microvasculature
Cited by: 132
Author(s): Daniela Fignani, Giada Licata, Noemi Brusco, Laura Nigi, Giuseppina Emanuela Grieco, Lorella Marselli, Lut Overbergh, Conny Gysemans, Máikel Luís Colli, Piero Marchetti, Chantal Mathieu, Décio L. Eizirik, Guido Sebastiani, Francesco Dotta
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2020.591476

Comparative Analysis of Skeletal Muscle Transcriptional Signatures Associated With Aerobic Exercise Capacity or Response to Training in Humans and Rats
Cited by: 10
Author(s): Yildiz Kelahmetoglu, Paulo R. Jannig, Igor Červenka, Lauren G. Koch, Steven L. Britton, Zhou Jia-jia, Huating Wang, Matthew M. Robinson, K. Sreekumaran Nair, Jorge L. Ruas
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.659962

Full-Length Transcriptome Analysis Reveals Candidate Genes Involved in Terpenoid Biosynthesis in Artemisia argyi
Cited by: 6
Author(s): Yupeng Cui, Xinqiang Gao, Jianshe Wang, Zhen Shang, Zhibin Zhang, Zhenxing Zhou, Kunpeng Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2014.00453

Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum
Cited by: 55
Author(s): David Marancik, Guangtu Gao, Bam Paneru, Hao Ma, Álvaro González Hernández, Mohamed Salem, Jianbo Yao, Yniv Palti, Gregory D. Wiens
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2019.00907

Molecular Pathways Mediating Immunosuppression in Response to Prolonged Intensive Physical Training, Low-Energy Availability, and Intensive Weight Loss
Cited by: 28
Author(s): Heikki V. Sarin, Ivan Gudelj, Jarno Honkanen, Johanna K. Ihalainen, Arja Vuorela, Joseph H. Lee, Zhi Jin, Joseph D. Terwilliger, Ville Isola, Juha P. Ahtiainen, Keijo Häkkinen, Julija Jurić, Gordan Lauc, Kati Kristiansson, Juha J. Hulmi, Markus Perola
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.00255

Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset
Cited by: 9
Author(s): Ahmed Abidi, Thomas Laurent, Gaëlle Bériou, Laurence Bouchet-Delbos, Cynthia Fourgeux, Cédric Louvet, Raja Marrakchi, Jérémie Poschmann, Régis Josien, Jérôme C. Martin
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.02505

Precise Delineation and Transcriptional Characterization of Bovine Blood Dendritic-Cell and Monocyte Subsets
Cited by: 22
Author(s): Stephanie C. Talker, Arnaud Baumann, G. Tuba Barut, Irene Keller, Rémy Bruggmann, Artur Summerfield
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2021.713704

IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells
Cited by: 3
Author(s): Wissam Charab, Matthew G. Rosenberger, Haridha Shivram, Justin Mirazee, Moses Donkor, Soumya Shekhar, Donjeta Gjuka, Kimberly H. Khoo, Jin Eyun Kim, Vishwanath R. Iyer, George Georgiou
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.590870

The Neat Dance of COVID-19: NEAT1, DANCR, and Co-Modulated Cholinergic RNAs Link to Inflammation
Cited by: 32
Author(s): Chanan Meydan, Nimrod Madrer, Hermona Soreq
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.686462

Enhanced Expression of Autoantigens During SARS-CoV-2 Viral Infection
Cited by: 17
Author(s): Narjes Saheb Sharif-Askari, Fatemeh Saheb Sharif-Askari, Samrein B M Ahmed, Suad Hannawi, Rifat Hamoudi, Qutayba Hamid, Rabih Halwani
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.698565

p16INK4a Regulates Cellular Senescence in PD-1-Expressing Human T Cells
Cited by: 13
Author(s): Valérie Janelle, Mathieu Neault, Marie-Ève Lebel, Dave Maurice De Sousa, Salix Boulet, Ludovic Durrieu, Cédric Carli, Chloé Muzac, Sébastien Lemieux, Nathalie Labrecque, Heather J. Melichar, Frédérick A. Mallette, Jean-Sébastien Delisle
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.695373

Identification of Genes Encoding Antimicrobial Proteins in Langerhans Cells
Cited by: 0
Author(s): Aislyn Oulee, Feiyang Ma, Rosane M. B. Teles, Bruno Jorge de Andrade Silva, Matteo Pellegrini, Eynav Klechevsky, Andrew N. Harman, Jake W. Rhodes, Robert L. Modlin
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2019.00446

Extracellular Vesicles Mediate Mesenchymal Stromal Cell-Dependent Regulation of B Cell PI3K-AKT Signaling Pathway and Actin Cytoskeleton
Cited by: 60
Author(s): Annalisa Adamo, Jessica Brandi, Simone Caligola, Pietro Delfino, Ilaria Tanasi, Roberta Carusone, Daniela Cecconi, Rosalba Giugno, Marcello Manfredi, Elisa Robotti, Emílio Marengo, Giulio Bassi, Paul Takam Kamga, Giada Dal Collo, Alessandro Gatti, Angela Mercuri, Maddalena Arigoni, Martina Olivero, Raffaele Calogero, Mauro Krampera
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.664619

Low Innate Immunity and Lagged Adaptive Immune Response in the Re-Tested Viral RNA Positivity of a COVID-19 Patient
Cited by: 5
Author(s): Changchun Lai, Xinglong Liu, Qihong Yan, Hualiang Lv, Lei Zhou, Lirong Hu, Yong Cai, Guoqiang Wang, Yufeng Chen, Renjie Chai, Zhenwei Liu, Yaobo Xu, Wendong Huang, Fei Xiao, Linhui Hu, Yaocai Li, Jianhong Huang, Qiang Zhou, Luqian Li, Tao Peng, Haiye Zhang, Zhenhui Zhang, Ling Chen, Chunbo Chen, Tianxing Ji
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.01290

T Cell Receptor–Major Histocompatibility Complex Interaction Strength Defines Trafficking and CD103+ Memory Status of CD8 T Cells in the Brain
Cited by: 12
Author(s): Anna Smerdel-Ramoya, Norimasa Yoshida, Elizabeth Motunrayo Kolawole, Harshil Patel, Brian D. Evavold, Eva‐Maria Frickel
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.623610

Therapeutic Potential of TNFα and IL1β Blockade for CRS/ICANS in CAR-T Therapy via Ameliorating Endothelial Activation
Cited by: 15
Author(s): Yunshuo Chen, Ranran Li, Siqi Shang, Xiaofeng Yang, Lei Li, Wenbo Wang, Yueying Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.624753

Exosomes Derived From Heat Stroke Cases Carry miRNAs Associated With Inflammation and Coagulation Cascade
Cited by: 9
Author(s): Yue Li, Qiang Wen, Huaisheng Chen, Xinhui Wu, Bin Liu, Hui Li, Lei Su, Huasheng Tong
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2017.00748

Alloantigen-Induced Regulatory T Cells Generated in Presence of Vitamin C Display Enhanced Stability of Foxp3 Expression and Promote Skin Allograft Acceptance
Cited by: 38
Author(s): Eirini Nikolouli, Matthias Hardtke‐Wolenski, Martin Hapke, Michael Beckstette, Robert Geffers, Stefan Floess, Elmar Jaeckel, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.00405

Transcriptomic Analysis of Monocyte-Derived Non-Phagocytic Macrophages Favors a Role in Limiting Tissue Repair and Fibrosis
Cited by: 23
Author(s): Sergei Butenko, Senthil Kumaran Satyanarayanan, Simaan Assi, Sagie Schif-Zuck, Dalit Barkan, Noa Sher, Amiram Ariel
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.02498

Peptides Derived of Kunitz-Type Serine Protease Inhibitor as Potential Vaccine Against Experimental Schistosomiasis
Cited by: 18
Author(s): Juan Hernández-Goenaga, Julio López‐Abán, Anna V. Protasio, Belén Vicente Santiago, Esther del Olmo, Magnolia Vanegas, Pedro Fernández‐Soto, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.00755

Phenotypic and Transcriptomic Analysis of Peripheral Blood Plasmacytoid and Conventional Dendritic Cells in Early Drug Naïve Rheumatoid Arthritis
Cited by: 26
Author(s): Faye A H Cooles, Amy E. Anderson, Andrew Skelton, Arthur G. Pratt, Mariola Kurowska‐Stolarska, Iain B. McInnes, Catharien M. U. Hilkens, John D. Isaacs
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2019.02161

A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection
Cited by: 17
Author(s): Candice Poux, Aleksandra Dondalska, Joseph Bergenstråhle, Sandra Pålsson, Vanessa Contreras, Claudia Arasa, Peter Järver, Jan Albert, David C. Busse, R. Legrand, Joakim Lundeberg, John S. Tregoning, Anna-Lena Spetz
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2021.677025

Biomarkers and Immune Repertoire Metrics Identified by Peripheral Blood Transcriptomic Sequencing Reveal the Pathogenesis of COVID-19
Cited by: 6
Author(s): Yang Liu, Yifan Wu, Bing Liu, Youpeng Zhang, Dan San, Chen Yu, Yu Zhou, Yu Liu, Hongtao Zeng, Yun Zhou, Fuxiang Zhou, Heng Yang, Lei Yin, Yafei Huang
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.676644

Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors NR4A2 and NR4A3 Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response
Cited by: 6
Author(s): Donnacha Phelan, Masahiko Shigemura, Sarah Aldhafiri, Catarina Mota, Thomas J. Hall, Jacob I. Sznajder, Evelyn P. Murphy, Daniel Crean, Eoin P. Cummins
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.01311

“Small” Intestinal Immunopathology Plays a “Big” Role in Lethal Cytokine Release Syndrome, and Its Modulation by Interferon-γ, IL-17A, and a Janus Kinase Inhibitor
Cited by: 9
Author(s): Shiv D. Kale, Brittney N. Mehrkens, Molly M. Stegman, Bridget Kastelberg, Henry Carnes, Rachel J. McNeill, Amy Rizzo, Saikumar Karyala, Sheryl Coutermarsh-Ott, Jackie A. Fretz, Ying Sun, Jonathan L. Koff, Govindarajan Rajagopalan
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.01175

Evaluation of a Recombinant Flavobacterium columnare DnaK Protein Vaccine as a Means of Protection Against Columnaris Disease in Channel Catfish (Ictalurus punctatus)
Cited by: 16
Author(s): Miles D. Lange, Jason Abernathy, Bradley D. Farmer
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.536442

TNFAIP3 Plays a Role in Aging of the Hematopoietic System
Cited by: 11
Author(s): Molly A. Smith, Ashley E. Culver‐Cochran, Emmalee R. Adelman, Garrett W. Rhyasen, Averil Ma, María E. Figueroa, Daniel T. Starczynowski
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.650331

Mast Cell and Eosinophil Activation Are Associated With COVID-19 and TLR-Mediated Viral Inflammation: Implications for an Anti-Siglec-8 Antibody
Cited by: 66
Author(s): Simon Gebremeskel, Julia Schanin, Krysta M. Coyle, Melina Butuci, Thuy T. Luu, Emily C. Brock, Xu Ao-ao, Alan Wong, John Leung, Wouter Korver, Ryan D. Morin, Robert P. Schleimer, Bruce S. Bochner, Brad Youngblood
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.00222

Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells
Cited by: 3
Author(s): Markus Zwick, Thomas Ulas, Yi-Li Cho, Christine Ried, Leonie Grosse, C. Robson Simon, Caroline Bernhard, Dirk H. Busch, Joachim L. Schultze, Veit R. Buchholz, Susanne Stutte, Thomas Brocker
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.01845

Transcriptomic Characterization of a Chicken Embryo Model Infected With Duck Hepatitis A Virus Type 1
Cited by: 16
Author(s): Jinyan Xie, Qiurui Zeng, Mingshu Wang, Xumin Ou, Yunchao Ma, Anchun Cheng, Xinxin Zhao, Mafeng Liu, Dekang Zhu, Shun Chen, Renyong Jia, Qiao Yang, Ying Wu, Shaqiu Zhang, Yunya Liu, Yanling Yu, Ling Zhang, Xiaoyue Chen
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.601494

Transplacental Innate Immune Training via Maternal Microbial Exposure: Role of XBP1-ERN1 Axis in Dendritic Cell Precursor Programming
Cited by: 16
Author(s): Kyle T Mincham, Anya C. Jones, Marie Bodinier, Naomi M. Scott, Jean-François Lauzon-Joset, Philip A. Stumbles, Anthony Bosco, Patrick G. Holt, Deborah H. Strickland
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.580547

Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection
Cited by: 7
Author(s): Sandra Pålsson, Aleksandra Dondalska, Joseph Bergenstråhle, Caroline Rolfes, Albin Björk, Laura Sedano, Ultan F. Power, Marie‐Anne Rameix‐Welti, Joakim Lundeberg, Marie Wahren‐Herlenius, Peter Mastrangelo, Jean-François Éléouët, Ronan Le Goffic, Marie Galloux, Anna-Lena Spetz
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.00515

Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis
Cited by: 16
Author(s): Ritesh Mewalal, Hengfu Yin, Rongbin Hu, Sara Jawdy, Patrice Vion, Gerald A. Tuskan, François Le Tacon, Jessy Labbé, Xiaohan Yang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.03146

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts
Cited by: 35
Author(s): Meichen Pan, Claudio Hidalgo-Cantabrana, Yong Jun Goh, Rosemary Sanozky-Dawes, Rodolphe Barrangou
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.706135

Probiotics Modulate Mouse Gut Microbiota and Influence Intestinal Immune and Serotonergic Gene Expression in a Site-Specific Fashion
Cited by: 15
Author(s): Valentina Taverniti, Valentina Cesari, Giorgio Gargari, Umberto Rossi, Cristina Biddau, Cristina Lecchi, Walter Fiore, Stefania Arioli, I. Toschi, Simone Guglielmetti
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.00690

The Functional and Molecular Effects of Doxycycline Treatment on Borrelia burgdorferi Phenotype
Cited by: 11
Author(s): John Caskey, Nicole R. Hasenkampf, Dale S. Martin, Vladimir N. Chouljenko, R. Subramanian, Mercedes Cheslock, Monica E. Embers
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.01094

High-Throughput Sequencing-Based Identification of Arabidopsis miRNAs Induced by Phytophthora capsici Infection
Cited by: 11
Author(s): Xiaofu Zhu, Shidan He, Di Fang, Liang Guo, Xiaoyi Zhou, Yushuang Guo, Lei Gao, Yongli Qiao
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.01901

Transcription Profiling Reveals Cooperative Metabolic Interactions in a Microbial Cheese-Ripening Community Composed of Debaryomyces hansenii, Brevibacterium aurantiacum, and Hafnia alvei
Cited by: 15
Author(s): Nguyen-Phuong Pham, Sophie Landaud, Pascale Lieben, Pascal Bonnarme, Christophe Monnet
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.534404

Effect of Warming on Growth, Grazing, and Community Composition of Free-Living Bacterioplankton in Subtropical Coastal Waters During Winter and Summer
Cited by: 3
Author(s): Bowei Gu, Candy Lee, Xiao Ma, Yehui Tan, Hongbin Liu, Xiaomin Xia
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.666277

Transcriptional Responses of Herbaspirillum seropedicae to Environmental Phosphate Concentration
Cited by: 3
Author(s): Mariana Grillo-Puertas, Josefina M. Villegas, Vânia C. S. Pankievicz, Michelle Z. Tadra-Sfeir, Francisco José Teles Mota, Elvira María Hébert, Liziane Cristina Campos Brusamarello-Santos, Raúl O. Pedraza, Fábio O. Pedrosa, Viviana Andrea Rapisarda, Emanuel Maltempi de Souza
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00726

Identification of Novel Genes Mediating Survival of Salmonella on Low-Moisture Foods via Transposon Sequencing Analysis
Cited by: 13
Author(s): Victor Jayeola, Michael McClelland, Steffen Porwollik, Chu Wu, Jeffrey M. Farber, Sophia Kathariou
Software Mentions: 1
Published: over 6 years ago

10.14573/altex.1805301

A human population-based organotypic in vitro model for cardiotoxicity screening
Cited by: 34
Author(s): Fabian A. Grimm, Alexander D. Blanchette, John S. House, Kyle Ferguson, Nan‐Hung Hsieh, Chimeddulam Dalaijamts, Alec A Wright, Blake D. Anson, Fred A. Wright, Weihsueh A. Chiu, Ivan Rusyn
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.03059

Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching
Cited by: 31
Author(s): Stephan Christel, Malte Herold, Sören Bellenberg, Antoine Buetti‐Dinh, Mohamed El Hajjami, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mario Vera, Mark Dopson
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.618476

Transcriptomic, Biochemical, and Morphological Study Reveals the Mechanism of Inhibition of Pseudopestalotiopsis camelliae-sinensis by Phenazine-1-Carboxylic Acid
Cited by: 7
Author(s): Qiaoxiu Yin, Rui Yang, Yafeng Ren, Zhao Yang, Tao Li, Haoliang Huang, Qin Tang, Dongxue Li, Shilong Jiang, Xian Wu, Delu Wang, Zhuo Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00629

Stem Cell Transcription Factor FoxO Controls Microbiome Resilience in Hydra
Cited by: 22
Author(s): Benedikt M Mortzfeld, Jan Taubenheim, Sebastian Fraune, Alexander Klimovich, Thomas C. G. Bosch
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.03287

Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032
Cited by: 12
Author(s): Hana Dostálová, Tobias Busche, Jiří Holátko, Lenka Rucká, Václav Štěpánek, Ivan Barvı́k, Jan Nešvera, Jörn Kalinowski, Miroslav Pátek
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2015.00703

The effect of carbon subsidies on marine planktonic niche partitioning and recruitment during biofilm assembly
Cited by: 12
Author(s): Charles Pepe-Ranney, Edward K. Hall
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2018.03057

Cell Wall Synthesis, Development of Hyphae and Metabolic Pathways Are Processes Potentially Regulated by MicroRNAs Produced Between the Morphological Stages of Paracoccidioides brasiliensis
Cited by: 5
Author(s): Juliana Santana de Curcio, Juliano D. Paccez, Evandro Novaes, Matthias Brock, Célia Maria de Almeida Soares
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.671852

Small Non-coding RNA Expression Following Respiratory Syncytial Virus or Measles Virus Infection of Neuronal Cells
Cited by: 0
Author(s): Abhijeet Bakre, Catherine Duffy, Hani’ah Abdullah, S. L. Cosby, Ralph A. Tripp
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.02227

LC-MS-Based Metabolomic Approach Revealed the Significantly Different Metabolic Profiles of Five Commercial Truffle Species
Cited by: 32
Author(s): Xin Li, Xiaoping Zhang, Lei Ye, Zongjing Kang, Dinghong Jia, Yang Lan, Bo Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2016.00995

Plants Rather than Mineral Fertilization Shape Microbial Community Structure and Functional Potential in Legacy Contaminated Soil
Cited by: 35
Author(s): Jakub Rídl, Michal Kolář, Michal Strejcek, Hynek Strnad, Petr Stursa, Jan Pačes, Tomáš Macek, Ondřej Uhlík
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2020.619542

Transcriptomic Basis of Serum Resistance and Virulence Related Traits in XDR P. aeruginosa Evolved Under Antibiotic Pressure in a Morbidostat Device
Cited by: 5
Author(s): Mumina Javed, Benedikt Jentzsch, Maximilian Heinrich, Viola Ueltzhoeffer, Silke Peter, Ulrich Schoppmeier, Angel Angelov, Sandra Schwarz, Matthias Willmann
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02284

Biomarkers for Early Stages of Johne’s Disease Infection and Immunization in Goats
Cited by: 11
Author(s): Aubrey Berry, Chia-Wei Wu, Amanda J. Venturino, Adel M. Talaat
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.02070

Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Cited by: 6
Author(s): Atsadang Boonmee, Haley F. Oliver, Soraya Chaturongakul
Software Mentions: 1
Published: about 7 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

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Papers Mentioning DESeq2 9,583