bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1186/s13059-017-1322-z

Systematic identification of regulatory variants associated with cancer risk
Cited by: 71
Author(s): Song Liu, Yuwen Liu, Qin Zhang, Jiayu Wu, Junbo Liang, Shan Yu, Gong-Hong Wei, Kevin P. White, Xiaoyue Wang
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13059-017-1235-x

Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants
Cited by: 114
Author(s): Alice Pajoro, Edouard Severing, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-014-0545-5

Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse
Cited by: 143
Author(s): Ghislain Auclair, Sylvain Guibert, Ambre Bender, Michaël Weber
Software Mentions: 1
Published: almost 12 years ago

10.1534/genetics.119.302538

A Stress-Responsive Signaling Network Regulating Pseudohyphal Growth and Ribonucleoprotein Granule Abundance in <i>Saccharomyces cerevisiae</i>
Cited by: 5
Author(s): Nebibe Mutlu, Daniel T. Sheidy, Angela M. Hsu, Han Seol Jeong, Katherine J. Wozniak, Anuj Kumar
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.00747

Transcriptional Landscapes of Divergent Sporophyte Development in Two Mosses, Physcomitrium (Physcomitrella) patens and Funaria hygrometrica
Cited by: 17
Author(s): Alexander Kirbis, Manuel Waller, Mariana Ricca, Zoe Bont, Anna Neubauer, Bernard Goffinet, Péter Szövényi
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2019.01141

Monitoring of Rice Transcriptional Responses to Contrasted Colonizing Patterns of Phytobeneficial Burkholderia s.l. Reveals a Temporal Shift in JA Systemic Response
Cited by: 17
Author(s): Eoghan King, Adrian Wallner, Isabelle Rimbault, Célia Barrachina, Agnieszka Klonowska, Lionel Moulin, Pierre Czernic
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.01094-19

Pharmacological Modulation of the Wnt/β-Catenin Pathway Inhibits Proliferation and Promotes Differentiation of Long-Lived Memory CD4 <sup>+</sup> T Cells in Antiretroviral Therapy-Suppressed Simian Immunodeficiency Virus-Infected Macaques
Cited by: 13
Author(s): Maud Mavigner, Michelle Zanoni, Gregory K. Tharp, Jakob Habib, Cameron Mattingly, Mathias Lichterfeld, Melon T. Nega, Thomas H. Vanderford, Steven E. Bosinger, Ann Chahroudi
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007562

Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection
Cited by: 10
Author(s): Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M. Monk, Rayees Rahman, Mini Kamboj, Bernhard Ø. Palsson, Wang Qiu, João B. Xavier
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-1295-4

Expression of SMARCD1 interacts with age in association with asthma control on inhaled corticosteroid therapy
Cited by: 4
Author(s): Michael J. McGeachie, Joanne E. Sordillo, Amber Dahlin, Alberta L. Wang, Sharon M. Lutz, Kelan G. Tantisira, Ronald Allan M Panganiban, Quan Lu, Satria Sajuthi, Cydney Urbanek, Rachel S. Kelly, Benjamin Saef, Celeste Eng, Sam S. Oh, Alvin T. Kho, Damien C. Croteau‐Chonka, Scott T. Weiss, Benjamin A. Raby, Angel C. Y. Mak, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold, Ann Chen Wu
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2018.01450

Overlapping Patterns of Gene Expression Between Gametophyte and Sporophyte Phases in the Fern Polypodium amorphum (Polypodiales)
Cited by: 13
Author(s): Erin M. Sigel, Eric Schuettpelz, Kathleen M. Pryer, Joshua P. Der
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12931-020-01402-3

T2 and T17 cytokines alter the cargo and function of airway epithelium-derived extracellular vesicles
Cited by: 12
Author(s): Elisabeth Ax, Zala Jevnikar, Aleksander Cvjetkovic, Carina Malmhäll, Henric Olsson, Madeleine Rådinger, Cecilia Lässer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-01522-w

Dexamethasone rescues TGF-β1-mediated β2-adrenergic receptor dysfunction and attenuates phosphodiesterase 4D expression in human airway smooth muscle cells
Cited by: 7
Author(s): Elena Chung, Christie A. Ojiaku, Gaoyuan Cao, Vishal Parikh, B.T. Deeney, Shengjie Xu, Serena Wang, Reynold A. Panettieri, Cynthia Koziol‐White
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12931-021-01645-8

Qi-Long-Tian formula extract alleviates symptoms of acute high-altitude diseases via suppressing the inflammation responses in rat
Cited by: 7
Author(s): Xing Fu, Chunyan Yang, Bing Chen, Kexing Zeng, Siyuan Chen, Fujin Yi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20030720

Transcriptomic Analysis of Planarians under Simulated Microgravity or 8 g Demonstrates That Alteration of Gravity Induces Genomic and Cellular Alterations That Could Facilitate Tumoral Transformation
Cited by: 5
Author(s): Nídia de Sousa, Gustavo Rodríguez-Esteban, Ivan Colagè, Paolo D’Ambrosio, Jack J. W. A. van Loon, Emili Saló, Teresa Adell, Gennaro Auletta
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2018.01300

MYBA From Blueberry (Vaccinium Section Cyanococcus) Is a Subgroup 6 Type R2R3MYB Transcription Factor That Activates Anthocyanin Production
Cited by: 48
Author(s): Blue Plunkett, Richard V. Espley, Andrew P. Dare, Ben Warren, Ella Grierson, Sarah Cordiner, Janice L. Turner, Andrew C. Allan, Nick W. Albert, Kevin Davies, Kathy E. Schwinn
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pbio.2006134

KDM5 histone demethylases repress immune response via suppression of STING
Cited by: 89
Author(s): Lizhen Wu, Jian Cao, Wesley L. Cai, Sabine M. Lang, J.R. Horton, Daniel J. Jansen, Zongzhi Z. Liu, Jocelyn F. Chen, Meiling Zhang, Bryan T. Mott, Katherine Pohida, Ganesha Rai, Stephen C. Kales, Mark J. Henderson, Xin Hu, Ajit Jadhav, David J. Maloney, Anton Simeonov, Shu Zhu, Akiko Iwasaki, Matthew D. Hall, Xiaodong Cheng, Gerald S. Shadel, Qin Yan
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms20040852

Transcriptome Profiling Reveals Effects of Drought Stress on Gene Expression in Diploid Potato Genotype P3-198
Cited by: 27
Author(s): Xiaohui Yang, Jie Liu, Jianfei Xu, Shaoguang Duan, Qianru Wang, Guangcun Li, Liping Jin
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.2004328

The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes
Cited by: 56
Author(s): Gerry Tonkin‐Hill, Leily Trianty, Rintis Noviyanti, Hanh Thi Ngoc Nguyen, Boni F. Sebayang, Daniel A. Lampah, Jutta Marfurt, Simon A. Cobbold, Janavi S. Rambhatla, Malcolm J. McConville, Stephen J. Rogerson, Graham V. Brown, Karen P. Day, Ric N. Price, Nicholas M. Anstey, Anthony T. Papenfuss, Michael Duffy
Software Mentions: 1
Published: over 8 years ago

10.1186/s12977-016-0275-8

Innate immune defects in HIV permissive cell lines
Cited by: 17
Author(s): Antonio Rausell, Miguel Muñoz, Raquel Martínez, Thierry Roger, Amalio Telenti, Angela Ciuffi
Software Mentions: 1
Published: about 10 years ago

10.1186/s12977-018-0436-z

Proceedings of the Frontiers in Retrovirology Conference 2018
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pbio.2000949

Pancreas lineage allocation and specification are regulated by sphingosine-1-phosphate signalling
Cited by: 24
Author(s): Ioannis Serafimidis, Eva Rodriguez-Aznar, Mathias Lesche, Kazuaki Yoshioka, Yoh Takuwa, Andreas Dahl, Duojia Pan, Anthony Gavalas
Software Mentions: 1
Published: over 9 years ago

10.1186/s12977-020-00533-1

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
Cited by: 18
Author(s): Nam Nguyen Quang, Sophie Goudey, Emmanuel Ségéral, Ammara Mohammad, Sophie Lemoine, Corinne Blugeon, Margaux Versapuech, Jean-Christophe Paillart, Clarisse Berlioz‐Torrent, Stéphane Emiliani, Sarah Gallois-Montbrun
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20061338

Transcriptome Profile of the Variegated Ficus microcarpa c.v. Milky Stripe Fig Leaf
Cited by: 11
Author(s): Tin-Han Shih, Szu-Hsien Lin, Meng‐Yuan Huang, W. Huang, Chi-Ming Yang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12284-020-00436-x

RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice
Cited by: 21
Author(s): Yajun Tao, Jun Miao, Jun Wang, Wenqi Li, Yongsheng Xu, Fangquan Wang, Jiang Yanjie, Zhihui Chen, Fangjun Fan, Mingliang Xu, Jie Yang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00446-9

The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants
Cited by: 32
Author(s): Zhongming Fang, Bowen Wu, Yuanyuan Ji
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.01861

Function of AP2/ERF Transcription Factors Involved in the Regulation of Specialized Metabolism in Ophiorrhiza pumila Revealed by Transcriptomics and Metabolomics
Cited by: 48
Author(s): Nirin Udomsom, Amit Rai, Hideyuki Suzuki, Jun Okuyama, Ryōsuke Imai, Tetsuya Mori, Ryo Nakabayashi, Kazuki Saito, Mami Yamazaki
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2019.01529

RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight
Cited by: 36
Author(s): Raúl Herranz, Joshua P. Vandenbrink, Alicia Villacampa, Aránzazu Manzano, William L. Poehlman, F. Alex Feltus, John Z. Kiss, F. Javier Medina
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.1002558

Disruption of an Evolutionarily Novel Synaptic Expression Pattern in Autism
Cited by: 70
Author(s): Xiling Liu, Dingding Han, Mehmet Somel, Xi Jiang, Hai Hu, Patricia Guijarro, Ning Zhang, Amanda Mitchell, Tobias B. Halene, John J. Ely, Chet C. Sherwood, Patrick R. Hof, Zilong Qiu, Svante Pääbo, Schahram Akbarian, Philipp Khaitovich
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep45327

Copy number variation profile in the placental and parental genomes of recurrent pregnancy loss families
Cited by: 26
Author(s): Laura Kasak, Kristiina Rull, Siim Sõber, Maris Laan
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.681166

Functional Characterization of the EMBRYONIC FLOWER 2 Gene Involved in Flowering in Ginkgo biloba
Cited by: 4
Author(s): Xian Zhou, Lanlan Wang, Janping Yan, Jiabao Ye, Shuiyuan Cheng, Feng Xu, Guiyuan Wang, Weiwei Zhang, Yongling Liao, Xiaomeng Liu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3000640

MKS-NPHP module proteins control ciliary shedding at the transition zone
Cited by: 25
Author(s): Delphine Gogendeau, Michel Lemullois, P. Le Borgne, Manon Castelli, Anne Aubusson-Fleury, Olivier Arnaiz, Jean Cohen, Christine Vesque, Sylvie Schneider‐Maunoury, Khaled Bouhouche, France Koll, Anne‐Marie Tassin
Software Mentions: 1
Published: over 6 years ago

10.1038/srep45458

Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses
Cited by: 29
Author(s): Andrea Vannini, Eva Pinatel, Paolo Emidio Costantini, Simone Pelliciari, Davide Roncarati, Simone Puccio, Gianluca De Bellis, Clelia Peano, Alberto Danielli
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.01186

Alteration of Bacterial Wilt Resistance in Tomato Plant by Microbiota Transplant
Cited by: 31
Author(s): Kihyuck Choi, Jae-Hun Choi, Pyeong An Lee, Nazish Roy, Raees Khan, Hyoung Ju Lee, Hang-Yeon Weon, Hyun Gi Kong, Seon-Woo Lee
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.01276

SgRVE6, a LHY-CCA1-Like Transcription Factor From Fine-Stem Stylo, Upregulates NB-LRR Gene Expression and Enhances Cold Tolerance in Tobacco
Cited by: 9
Author(s): Shu Chen, Huai-An Huang, Jianhui Chen, Chengcheng Fu, Penglin Zhan, Shanwen Ke, Xiangqian Zhang, Tao Zhong, Xuewen Xie
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20071708

Transcriptional Profile Corroborates that bml Mutant Plays likely Role in Premature Leaf Senescence of Rice (Oryza sativa L.)
Cited by: 4
Author(s): Delara Akhter, Ran Qin, Ujjal Kumar Nath, Jamal Eshag, Xiaogang Jin, Chao Shi
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.730651

Transcriptomic and Metabolomic Analyses Provide Insights Into an Aberrant Tissue of Tea Plant (Camellia sinensis)
Cited by: 1
Author(s): Ding-Ding Liu, Jun-Ya Wang, Rong-Jin Tang, Jie-Dan Chen, Zhen Liu, Liang Chen, Ming-Zhe Yao, Chun-Lei Ma
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-01109-4

Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation
Cited by: 27
Author(s): Janne Purhonen, Jayasimman Rajendran, Matthias Mörgelin, Kristiina Uusi-Rauva, Shintaro Katayama, Kaarel Krjutškov, Elisabet Einarsdottir, Vidya Velagapudi, Juha Kere, Matti Jauhiainen, Vineta Fellman, Jukka Kallijärvi
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.658590

Ciboria carunculoides Suppresses Mulberry Immune Responses Through Regulation of Salicylic Acid Signaling
Cited by: 4
Author(s): Zhiyuan Lv, Lijuan Hao, Bi Ma, Ziwen He, Yiwei Luo, Youchao Xin, Ningjia He
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000287

Placental chemokine compartmentalisation: A novel mammalian molecular control mechanism
Cited by: 16
Author(s): Kit Ming Lee, G. L. Wilson, Marieke Pingen, Ayumi Fukuoka, Christopher A.H. Hansell, Robin Bartolini, Laura Medina-Ruiz, Gerard J. Graham
Software Mentions: 1
Published: over 7 years ago

10.3390/nu12041140

Key Vitamin D Target Genes with Functions in the Immune System
Cited by: 58
Author(s): Oona Koivisto, Andrea Hanel, Carsten Carlberg
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.574881

Auxin and Its Interaction With Ethylene Control Adventitious Root Formation and Development in Apple Rootstock
Cited by: 14
Author(s): Tuanhui Bai, Zhidan Dong, Xianbo Zheng, Shangwei Song, Jian Jiao, Miaomiao Wang, Chunhui Song
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-02628-w

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85
Cited by: 12
Author(s): Chia-Wei Wu, Thomas E. Spike, Dawn M. Klingeman, Miguel Rodríguez, Virgil R. Bremer, Steven D. Brown
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.669143

PagERF16 of Populus Promotes Lateral Root Proliferation and Sensitizes to Salt Stress
Cited by: 13
Author(s): Shengji Wang, Juanjuan Huang, Xingdou Wang, Yanting Fan, Qiang Liu, Youzhi Han
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02397-6

A-to-I editing in human miRNAs is enriched in seed sequence, influenced by sequence contexts and significantly hypoedited in glioblastoma multiforme
Cited by: 52
Author(s): Deepanjan Paul, Ashis Narayan Sinha, Ray A, Megha Lal, Subhashree Nayak, Anchal Sharma, Bharati Mehani, Debasish Mukherjee, Saurabh V. Laddha, Ashish Suri, Chitra Sarkar, Arijit Mukhopadhyay
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02298-8

Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize
Cited by: 25
Author(s): Vívian de Jesus Miranda, William F. Porto, Gabriel da Rocha Fernandes, Robert Pogue, Diego O. Nolasco, Ana Cláudia Guerra Araújo, L. V. Cota, Camila Guimarães de Freitas, Simoni Campos Dias, Octávio L. Franco
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.574316

ENO2 Affects the Seed Size and Weight by Adjusting Cytokinin Content and Forming ENO2-bZIP75 Complex in Arabidopsis thaliana
Cited by: 12
Author(s): Zijin Liu, Lamei Zheng, Li Pu, Xiaofeng Ma, Xing Wang, Yu Wu, Hainan Ming, Qing Wang, Genfa Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2019.01409

Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis
Cited by: 7
Author(s): William L. Poehlman, Elise Schnabel, Suchitra Chavan, Julia Frugoli, F. Alex Feltus
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2021.646222

Fine Mapping and Candidate Gene Identification of a White Flower Gene BrWF3 in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
Cited by: 14
Author(s): Yang Shu, Xinxin Tian, Zhiyong Wang, Xiaochun Wei, Yanyan Zhao, Henan Su, Xiaobin Zhao, Bin Tian, Yuxiang Yuan, Xiaowei Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02873-z

Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium
Cited by: 13
Author(s): Ofir Haramati, Anastasia Brodov, Idan Yelin, Avigail Atir-Lande, Nitzan Samra, Yoav Arava
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2019.00616

Role of Cytokinin, Strigolactone, and Auxin Export on Outgrowth of Axillary Buds in Apple
Cited by: 34
Author(s): Ming Tan, Guofang Li, Xilong Chen, Libo Xing, Junsheng Ma, Dong Zhang, Hongjuan Ge, Mingyu Han, Guangli Sha, Na An
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03687-9

RNAseq based transcriptomics study of SMCs from carotid atherosclerotic plaque: BMP2 and IDs proteins are crucial regulators of plaque stability
Cited by: 19
Author(s): Iraide Alloza, Haize Goikuria, Juan Luis Idro, Juan Carlos Triviño, José María Fernández Velasco, Elena Elizagaray, María García-Barcina, Genoveva Montoya‐Murillo, E. Sarasola, Reyes Vega Manrique, María Del Mar Freijo, Koen Vandenbroeck
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2019.00763

Tapetal Expression of BnaC.MAGL8.a Causes Male Sterility in Arabidopsis
Cited by: 6
Author(s): Jie Gao, Qun Li, Nan Wang, Baolong Tao, Jing Wen, Bin Yi, Chaozhi Ma, Jinxing Tu, Tingdong Fu, Qiang Li, Jitao Zou, Jinxiong Shen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03987-0

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids
Cited by: 24
Author(s): Bart Cuypers, Malgorzata A. Domagalska, Pieter Meysman, Géraldine De Muylder, Manu Vanaerschot, Hideo Imamura, Franck Dumetz, Thomas-Wolf Verdonckt, Peter J. Myler, Gowthaman Ramasamy, Kris Laukens, Jean‐Claude Dujardin
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.601771

Physiological and Expressional Regulation on Photosynthesis, Starch and Sucrose Metabolism Response to Waterlogging Stress in Peanut
Cited by: 21
Author(s): Ruier Zeng, Tingting Chen, Xinyue Wang, Jiang Cao, Xi Li, Xueyu Xu, Lei Chen, Qiuyuan Xia, Yonglong Dong, Lüping Huang, Leidi Wang, Jialei Zhang, Lei Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20092212

Molecular Signature of Prospero Homeobox 1 (PROX1) in Follicular Thyroid Carcinoma Cells
Cited by: 6
Author(s): Magdalena Rudzińska, Małgorzata Grzanka, Anna Stachurska, Michał Mikula, Katarzyna Paczkowska, Tomasz Stępień, Agnieszka Paziewska, Jerzy Ostrowski, Barbara Czarnocka
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04616-6

Site-specific gene expression analysis using an automated tissue micro-dissection punching system
Cited by: 15
Author(s): Takuya Yoda, Masahito Hosokawa, Kazutaka Takahashi, Chikako Sakanashi, Haruko Takeyama, Hideki Kambara
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04250-2

Tumoral expression of drug and xenobiotic metabolizing enzymes in breast cancer patients of different ethnicities with implications to personalized medicine
Cited by: 34
Author(s): Yan Li, Albert Steppi, Yidong Zhou, Feng Mao, Philip Miller, Max M. He, Tingting Zhao, Qiang Sun, Jinfeng Zhang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04743-0

Biochemical and genetic predictors of overall survival in patients with metastatic pancreatic cancer treated with capecitabine and nab-paclitaxel
Cited by: 5
Author(s): Daniela Bianconi, Gerwin Heller, Daniel Spies, Merima Herac, Andreas Gleiß, Sandra Liebmann-Reindl, Matthias Unseld, Markus Kieler, Werner Scheithauer, Berthold Streubel, Christoph Zielinski, Gerald W. Prager
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2021.740976

Overexpression of NtCBL5A Leads to Necrotic Lesions by Enhancing Na+ Sensitivity of Tobacco Leaves Under Salt Stress
Cited by: 3
Author(s): Jingjing Mao, Jiaping Yuan, Zhijie Mo, Lulu An, Suhua Shi, R.G.F. Visser, Yuling Bai, Yanfa Sun, Guanshan Liu, Haobao Liu, Qian Wang, C. Gerard van der Linden
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/5512166

Gene Expression Profiling and Biofunction Analysis of HepG2 Cells Targeted by Crocetin
Cited by: 0
Author(s): Yi-Ling Wen, Yong Li, Guangcheng Zhu, Zhibing Zheng, Meng Shi, Si Qin
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.00228

Anther Morphological Development and Stage Determination in Triticum aestivum
Cited by: 44
Author(s): Richard G. Browne, Sylvana Iacuone, Song F. Li, Rudy Dolferus, Roger W. Parish
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2021.680469

Activation of PsMYB10.2 Transcription Causes Anthocyanin Accumulation in Flesh of the Red-Fleshed Mutant of ‘Sanyueli’ (Prunus salicina Lindl.)
Cited by: 13
Author(s): Zhi‐Zhen Fang, Kui Lin‐Wang, Dan‐Rong Zhou, Yanan Lin, Cuicui Jiang, Shao‐Lin Pan, Richard V. Espley, Christelle M. André, Xinfu Ye
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001097

Nonsense-mediated decay controls the reactivation of the oncogenic herpesviruses EBV and KSHV
Cited by: 7
Author(s): Michiel van Gent, Adrian Reich, Sadanandan E. Velu, Michaela U. Gack
Software Mentions: 1
Published: over 5 years ago

10.3390/nu11040776

Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F1 Mice
Cited by: 15
Author(s): Bill J. Gurley, Isabelle R. Miousse, Intawat Nookaew, Laura Ewing, Charles M. Skinner, Piroon Jenjaroenpun, Thidathip Wongsurawat, Stefanie Kennon-McGill, Bharathi Avula, Ji Yeong Bae, Mitchell R. McGill, David W. Ussery, Ikhlas A. Khan, Igor Koturbash
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.648193

Screening and Interaction Analysis Identify Genes Related to Anther Dehiscence in Solanum melongena L.
Cited by: 3
Author(s): Zhimin Wang, Chao Yuan, Shaowei Zhang, Shiping Tian, Qinglin Tang, Dongfeng Wei, Ying-Feng Niu
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.712038

Integrated Metabolomics and Transcriptome Analysis of Flavonoid Biosynthesis in Safflower (Carthamus tinctorius L.) With Different Colors
Cited by: 27
Author(s): Rui Wang, Chaoxiang Ren, Shuai Dong, Chao Chen, Bin Xian, Qinghua Wu, Jie Wang, Jin Pei, Chen Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01674

Transcriptomic Analysis of Seed Coats in Yellow-Seeded Brassica napus Reveals Novel Genes That Influence Proanthocyanidin Biosynthesis
Cited by: 52
Author(s): Meiyan Hong, Kaining Hu, Tiantian Tian, Xia Li, Li Chen, Yan Zhang, Bin Yi, Jing Wen, Chaozhi Ma, Tingdong Fu, Jinxing Tu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08148-x

Comprehensive miRNA expression profiling in human T-cell acute lymphoblastic leukemia by small RNA-sequencing
Cited by: 46
Author(s): Annelynn Wallaert, Wouter Van Loocke, Lucie Hernandez, Tom Taghon, Franki Speleman, Pieter Van Vlierberghe
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2019.01564

Transcription Factor CsWIN1 Regulates Pericarp Wax Biosynthesis in Cucumber Grafted on Pumpkin
Cited by: 26
Author(s): Jian Zhang, Jingjing Yang, Yang Yang, Jian Luo, Xiaoliang Zheng, Changlong Wen, Yong Ju Xu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ma12244082

General Study and Gene Expression Profiling of Endotheliocytes Cultivated on Electrospun Materials
Cited by: 3
Author(s): Alena O. Stepanova, Petr P. Laktionov, Anna V. Cherepanova, Vera S. Chernonosova, Georgiy Yu. Shevelev, Ivan A. Zaporozhchenko, А. М. Караськов, Pavel P. Laktionov
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-08499-5

Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics
Cited by: 41
Author(s): Ashish Deshpande, Krishanpal Anamika, Vineet Jha, Hemangi G. Chidley, Pranjali S. Oak, Narendra Y. Kadoo, K. H. Pujari, Ashok P. Giri, Vidya S. Gupta
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms20133321

Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis
Cited by: 25
Author(s): Zifeng Yang, Li Wen, Xiao Dong Su, Pingfei Ge, Yan Zhou, Yuanyuan Hao, Huangying Shu, Chonglun Gao, Shanhan Cheng, Guopeng Zhu, Zhiwei Wang
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.01912

Dissecting the Variations of Ripening Progression and Flavonoid Metabolism in Grape Berries Grown under Double Cropping System
Cited by: 28
Author(s): Wei-Kai Chen, Bai XianJin, Mengji Cao, Guodong Cheng, Cao XiongJun, Rongrong Guo, Yu Wang, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 1
Published: almost 9 years ago

10.3390/plants9091162

Gene Expression Profiles and Flavonoid Accumulation during Salt Stress in Ginkgo biloba Seedlings
Cited by: 49
Author(s): Ningtao Xu, Sian Liu, Zhaogeng Lu, Siyu Pang, Lu Wang, Li Wang, Weixing Li
Software Mentions: 1
Published: about 6 years ago

10.3390/plants9081006

Tumorous Stem Development of Brassica Juncea: A Complex Regulatory Network of Stem Formation and Identification of Key Genes in Glucosinolate Biosynthesis
Cited by: 6
Author(s): Mengyao Li, Fangjie Xie, Jie Li, Bo Sun, Yunbo Luo, Yong Zhang, Yan Wang, Fen Zhang, Yunting Zhang, Yuanxiu Lin, Xiaorong Wang, Haoru Tang
Software Mentions: 1
Published: about 6 years ago

10.3390/plants9121767

Pitfall Flower Development and Organ Identity of Ceropegia sandersonii (Apocynaceae-Asclepiadoideae)
Cited by: 3
Author(s): Annemarie Heiduk, Dewi Pramanik, Marlies Spaans, Loes Gast, Nemi Dorst, Bertie Joan van Heuven, Barbara Gravendeel
Software Mentions: 1
Published: almost 6 years ago

10.3390/md19010041

Topsentinol L Trisulfate, a Marine Natural Product That Targets Basal-like and Claudin-Low Breast Cancers
Cited by: 3
Author(s): Nader N. El-Chaar, Thomas E. Smith, Gajendra Shrestha, Stephen R. Piccolo, Mary Kay Harper, Ryan M. Van Wagoner, Zhenyu Lu, Ashlee R. Venancio, Chris M. Ireland, Andrea Bild, Philip J. Moos
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-11696-x

Maternal diabetes causes developmental delay and death in early-somite mouse embryos
Cited by: 7
Author(s): Jing Zhao, Theodorus B. M. Hakvoort, Jan M. Ruijter, Aldo Jongejan, Jan Koster, Sigrid Swagemakers, Aleksandar Sokolović, Wouter H. Lamers
Software Mentions: 1
Published: about 9 years ago

10.3390/plants10091883

Identification and Characterization of Verticillium nonalfalfae-Responsive MicroRNAs in the Roots of Resistant and Susceptible Hop Cultivars
Cited by: 1
Author(s): Urban Kunej, Jernej Jakše, Sebastjan Radišek, Nataša Štajner
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10081744

Arabidopsis thaliana Response to Extracellular DNA: Self Versus Nonself Exposure
Cited by: 23
Author(s): Maria Luisa Chiusano, Guido Incerti, Chiara Colantuono, Pasquale Termolino, Emanuela Palomba, Francesco Monticolo, Giovanna Benvenuto, Alessandro Foscari, Alfonso Esposito, Lucia Marti, Giulia De Lorenzo, Isaac Vega-Muñoz, Martin Heil, Fabrizio Cartení, Giuliano Bonanomi, Stefano Mazzoleni
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-12045-8

CD24, CD44 and EpCAM enrich for tumour-initiating cells in a newly established patient-derived xenograft of nasopharyngeal carcinoma
Cited by: 13
Author(s): Susan Hoe, Lu Tan, Norazlin Abdul Aziz, Kitson Liew, Sin-Yeang Teow, F. Reeny Abdul Razak, Yoon Ming Chin, Nurul Ashikin Mohamed Shahrehan, Tai Lin Chu, Noor Kaslina Mohd Kornain, Suat‐Cheng Peh, Cheng Eng Koay, Kwok Wai Lo, Munirah Ahmad, Ching Ching Ng, Alan Soo Beng Khoo
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12249-y

Integrating transcriptome and microRNA analysis identifies genes and microRNAs for AHO-induced systemic acquired resistance in N. tabacum
Cited by: 25
Author(s): Yongdui Chen, Jiahong Dong, Jeffrey L. Bennetzen, Mingyu Zhong, Jun Yang, Jie Zhang, Shun‐Lin Li, Xiao‐Jiang Hao, Zhiqing Philippe Zhang, Xuewen Wang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2021.720679

Transcriptome Analysis Reveals the Important Role of WRKY28 in Fusarium oxysporum Resistance
Cited by: 3
Author(s): Jian Diao, Jiaqi Wang, Ping Zhang, Xin Hao, Yang Wang, Liwei Liang, Yue Zhang, Wei Ma, Ling Ma
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.638321

Association of T2/S-RNase With Self-Incompatibility of Japanese Citrus Accessions Examined by Transcriptomic, Phylogenetic, and Genetic Approaches
Cited by: 8
Author(s): Chitose Honsho, Koichiro Ushijima, Misa Anraku, Shuji Ishimura, Qibin Yu, Frederick G. Gmitter, Takuya Tetsumura
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.01145

Aphid-Responsive Defense Networks in Hybrid Switchgrass
Cited by: 15
Author(s): Kyle G. Koch, Nathan A. Palmer, Teresa Donze-Reiner, Erin D. Scully, Javier Seravalli, Keenan Amundsen, Paul Twigg, Joe Louis, Jeffrey D. Bradshaw, Tiffany Heng-Moss, Gautam Sarath
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.00535

Complex Trait Loci in Maize Enabled by CRISPR-Cas9 Mediated Gene Insertion
Cited by: 39
Author(s): Huirong Gao, Jasdeep S. Mutti, Joshua K. Young, Meizhu Yang, Megan Schroder, Brian Lenderts, Limin Wang, Dave Peterson, Grace St. Clair, Spencer Jones, Lanie Feigenbutz, Wally Marsh, Min Zeng, Susan Wagner, Jeffry Farrell, Kay Snopek, Chris Scelonge, Xiaoyi Sopko, Jeffry D. Sander, Scott D. Betts, A. Mark Cigan, N. Doane Chilcoat
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9060685

Transcriptome Analysis Identifies Candidate Target Genes Involved in Glyphosate-Resistance Mechanism in Lolium multiflorum
Cited by: 10
Author(s): Joanei Cechin, Cristiano Piasecki, Daiane P. Benemann, Frederico Schmitt Kremer, Vanessa Galli, Luciano Carlos da Maia, Dirceu Agostinetto, And Leandro Vargas
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20184586

The miRNA–mRNA Networks Involving Abnormal Energy and Hormone Metabolisms Restrict Tillering in a Wheat Mutant dmc
Cited by: 9
Author(s): Junhang An, Hao Niu, Yongjing Ni, Yumei Jiang, Yong-Xing Zheng, Ruishi He, Junchang Li, Zhixin Jiao, Jing Zhang, Huijuan Li, Qiaoyun Li, Jishan Niu
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.710867

Characterization of Dynamic Regulatory Gene and Protein Networks in Wheat Roots Upon Perceiving Water Deficit Through Comparative Transcriptomics Survey
Cited by: 4
Author(s): Yousef Rahimi, Pär K. Ingvarsson, Mohammad Reza Bihamta, Hadi Alipour, Alireza Taleei, Shaghayegh Khoshnoodi Jabar Abadi
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2016.01784

Comparative Transcriptomic Analysis of Virulence Factors in Leptosphaeria maculans during Compatible and Incompatible Interactions with Canola
Cited by: 40
Author(s): Humira Sonah, Xuehua Zhang, Rupesh Deshmukh, M. Hossein Borhan, W. G. Dilantha Fernando, Richard R. Bélanger
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms20194908

Abscisic Acid Represses Rice Lamina Joint Inclination by Antagonizing Brassinosteroid Biosynthesis and Signaling
Cited by: 14
Author(s): Qianfeng Li, Jun Lü, Yu Zhou, Fan Wu, Hongning Tong, Jin-Dong Wang, Jiawen Yu, Changquan Zhang, Xiaolei Fan
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20205042

Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress
Cited by: 41
Author(s): Jing Wang, Junheng Lv, Zhoubin Liu, Yuhua Liu, Jingshuang Song, Yanqing Ma, Lijun Ou, Xilu Zhang, Chengliang Liang, Fei Wang, Niran Juntawong, Jiao Chen, Wenchao Chen, Xuexiao Zou
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2019.01490

HY5 Contributes to Light-Regulated Root System Architecture Under a Root-Covered Culture System
Cited by: 25
Author(s): Yonghong Zhang, Chunfei Wang, Hui Xu, Xinjian Shi, Weibo Zhen, Zhubing Hu, Ji Huang, Yan Zheng, Ping Huang, Kun-Xiao Zhang, Xiao Xiao, Xiao‐Jiang Hao, Xuanbin Wang, Chao Zhou, Guodong Wang, Chen Li, Lanlan Zheng
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2018.00839

Evidence for the Involvement of Fatty Acid Biosynthesis and Degradation in the Formation of Insect Sex Pheromone-Mimicking Chiloglottones in Sexually Deceptive Chiloglottis Orchids
Cited by: 7
Author(s): Darren Chern Jan Wong, Ranamalie Amarasinghe, Eran Pichersky, Rod Peakall
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19236-x

Transcriptome profiling during mangrove viviparity in response to abscisic acid
Cited by: 13
Author(s): Liang Hong, Wenyue Su, Yuanye Zhang, Congting Ye, Yingjia Shen, Qingshun Quinn Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2016.00715

Transcriptome Profiling of Buffalograss Challenged with the Leaf Spot Pathogen Curvularia inaequalis
Cited by: 7
Author(s): Bimal S. Amaradasa, Keenan Amundsen
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2020.00672

Analysis of Dynamic Global Transcriptional Atlas Reveals Common Regulatory Networks of Hormones and Photosynthesis Across Nicotiana Varieties in Response to Long-Term Drought
Cited by: 13
Author(s): Jing Wang, Shihua Zhang, Yunpeng Fu, Tiantian He, Xuewen Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20205176

Current Smoking is Associated with Decreased Expression of miR-335-5p in Parenchymal Lung Fibroblasts
Cited by: 12
Author(s): Jennie Ong, Anke van den Berg, Alen Faiz, Ilse M. Boudewijn, Wim Timens, Cornelis J Vermeulen, Brian G. Oliver, Klaas Kok, Martijn Terpstra, Maarten van den Berge, Corry‐Anke Brandsma, Joost Kluiver
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20661-1

Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance
Cited by: 27
Author(s): Donghui Choe, Richard Szubin, Samira Dahesh, Suhyung Cho, Victor Nizet, Jaehyung Kim, Byung-Kwan Cho
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-20744-z

Transcriptomic changes in the pre-implantation uterus highlight histotrophic nutrition of the developing marsupial embryo
Cited by: 20
Author(s): Camilla M. Whittington, Denis O’Meally, Melanie K. Laird, Katherine Belov, Michael B. Thompson, Bronwyn M. McAllan
Software Mentions: 1
Published: over 8 years ago

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