bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3390/cells9051173

The Expression of microRNA in Adult Rat Heart with Isoproterenol-Induced Cardiac Hypertrophy
Cited by: 6
Author(s): Mailin Gan, Shunhua Zhang, Fan Yuan, Yimin Tan, Zhixian Guo, Lei Chen, Lin Bai, Dongmei Jiang, Xiaoxia Hao, Xuewei Li, Linyuan Shen, Li Zhu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-88397-z

Transcriptomics and metabolomics reveal the adaption of Akkermansia muciniphila to high mucin by regulating energy homeostasis
Cited by: 18
Author(s): Xinyue Liu, Zhanming Fan, Hui Liu, Yunting Xie, Di Zhao, Chunbao Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-11696-x

Maternal diabetes causes developmental delay and death in early-somite mouse embryos
Cited by: 7
Author(s): Jing Zhao, Theodorus B. M. Hakvoort, Jan M. Ruijter, Aldo Jongejan, Jan Koster, Sigrid Swagemakers, Aleksandar Sokolović, Wouter H. Lamers
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-08499-5

Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics
Cited by: 41
Author(s): Ashish Deshpande, Krishanpal Anamika, Vineet Jha, Hemangi G. Chidley, Pranjali S. Oak, Narendra Y. Kadoo, K. H. Pujari, Ashok P. Giri, Vidya S. Gupta
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-88445-8

The sugar composition of the fibre in selected plant foods modulates weaning infants’ gut microbiome composition and fermentation metabolites in vitro
Cited by: 9
Author(s): Shanthi G. Parkar, Jovyn K. T. Frost, Douglas Rosendale, Halina Stoklosinski, Carel M. H. Jobsis, Duncan I. Hedderley, Pramod K. Gopal
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-08148-x

Comprehensive miRNA expression profiling in human T-cell acute lymphoblastic leukemia by small RNA-sequencing
Cited by: 46
Author(s): Annelynn Wallaert, Wouter Van Loocke, Lucie Hernandez, Tom Taghon, Franki Speleman, Pieter Van Vlierberghe
Software Mentions: 1
Published: about 9 years ago

10.1098/rsob.160293

Peripheral self-reactivity regulates antigen-specific CD8 T-cell responses and cell division under physiological conditions
Cited by: 6
Author(s): Lee Kim Swee, Zhen Tan, Anna Smerdel-Ramoya, Norimasa Yoshida, Harshil Patel, Gijsbert M. Grotenbreg, Eva‐Maria Frickel, Hidde L. Ploegh
Software Mentions: 1
Published: almost 10 years ago

10.3390/nu12061586

Effect of a Multispecies Probiotic on Intestinal and Skin Colonization by Multidrug-Resistant Gram-Negative Bacteria in Patients in a Long-Term Care Facility: A Pilot Study
Cited by: 2
Author(s): Ines Zollner‐Schwetz, Monika Scarpatetti, Gerhard Pichler, Christian Pux, Ingeborg Klymiuk, Slave Trajanoski, Robert Krause
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89288-z

Biomechanical regulation of breast cancer metastasis and progression
Cited by: 10
Author(s): Adrianne Spencer, Andrew D. Sligar, Daniel Chavarria, Jason Lee, Darshil Choksi, Nikita P. Patil, HooWon Lee, Austin Veith, William J. Riley, Shubh Desai, Ali Abbaspour, Rohan Singeetham, Aaron Baker
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12051395

Dietary Protein, Fiber and Coffee Are Associated with Small Intestine Microbiome Composition and Diversity in Patients with Liver Cirrhosis
Cited by: 10
Author(s): Shehnaz K. Hussain, Tien S. Dong, Vatche G. Agopian, Joseph R. Pisegna, Francisco Durazo, Pedram Enayati, Vinay Sundaram, Jihane N. Benhammou, Mazen Noureddin, Gina Choi, Walid Ayoub, Venu Lagishetty, David Elashoff, Marc T. Goodman, Jonathan P. Jacobs
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89170-y

Single-cell transcriptome profiling of buffelgrass (Cenchrus ciliaris) eggs unveils apomictic parthenogenesis signatures
Cited by: 5
Author(s): Yuji Ke, Maricel Podio, Joann A. Conner, Peggy Ozias‐Akins
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-04743-0

Biochemical and genetic predictors of overall survival in patients with metastatic pancreatic cancer treated with capecitabine and nab-paclitaxel
Cited by: 5
Author(s): Daniela Bianconi, Gerwin Heller, Daniel Spies, Merima Herac, Andreas Gleiß, Sandra Liebmann-Reindl, Matthias Unseld, Markus Kieler, Werner Scheithauer, Berthold Streubel, Christoph Zielinski, Gerald W. Prager
Software Mentions: 1
Published: about 9 years ago

10.3390/nu13061837

Foxtail Millet Improves Blood Glucose Metabolism in Diabetic Rats through PI3K/AKT and NF-κB Signaling Pathways Mediated by Gut Microbiota
Cited by: 25
Author(s): Xin Ren, Linxuan Wang, Zenglong Chen, Dianzhi Hou, Yong Xue, Xianmin Diao, Qun Shen
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200246

Temperature modulates immune gene expression in mosquitoes during arbovirus infection
Cited by: 18
Author(s): B. M. C. Randika Wimalasiri-Yapa, Roberto A. Barrero, Liesel Stassen, Louise M. Hafner, Elizabeth A. McGraw, Alyssa T. Pyke, Cassie C. Jansen, Andreas Suhrbier, Laith Yakob, Wenbiao Hu, Gregor J. Devine, Francesca D. Frentiu
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200182

Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome
Cited by: 4
Author(s): Siriluck Ponsuksili, Michael Oster, Henry Reyer, Frieder Hadlich, Nares Trakooljul, M. Rodehutscord, Amélia Camarinha‐Silva, Jörn Bennewitz, Klaus Wimmers
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6052461

Morphological and Transcriptome Analyses Provide Insights into Growth Inhibition of Trichophyton rubrum Caused by Laser Irradiation
Cited by: 2
Author(s): Ruina Zhang, Zhao Jun, Lin-Feng Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89853-6

Accelerating cryoprotectant diffusion kinetics improves cryopreservation of pancreatic islets
Cited by: 8
Author(s): Nikola Doležalová, Anja V. Gruszczyk, Kerry Barkan, John Gamble, Sam G Galvin, Till Moreth, Kevin O’Holleran, Krishnaa Mahbubani, Jackie Higgins, Fiona M. Gribble, Frank Reimann, Jakub Surmacki, Simon Andrews, John Casey, Francesco Pampaloni, Michael P. Murphy, Graham Ladds, Nigel K.H. Slater, Kourosh Saeb‐Parsy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-90148-z

Whole transcriptome RNA-seq reveals key regulatory factors involved in type 2 diabetes pathology in peripheral fat of Asian Indians
Cited by: 7
Author(s): Aditya Saxena, Navneet Mathur, Prabhat Tiwari, Sandeep Kumar Mathur
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-04250-2

Tumoral expression of drug and xenobiotic metabolizing enzymes in breast cancer patients of different ethnicities with implications to personalized medicine
Cited by: 34
Author(s): Yan Li, Albert Steppi, Yidong Zhou, Feng Mao, Philip Miller, Max M. He, Tingting Zhao, Qiang Sun, Jinfeng Zhang
Software Mentions: 1
Published: about 9 years ago

10.1002/eji.201746960

Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3+ regulatory T cells
Cited by: 12
Author(s): Mária Pásztói, Joern Pezoldt, Michael Beckstette, Christoph Lipps, Dagmar Wirth, Manfred Rohde, Krisztina Pálóczi, Edit I. Buzás, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04616-6

Site-specific gene expression analysis using an automated tissue micro-dissection punching system
Cited by: 15
Author(s): Takuya Yoda, Masahito Hosokawa, Kazutaka Takahashi, Chikako Sakanashi, Haruko Takeyama, Hideki Kambara
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-90467-1

PET-CT and RNA sequencing reveal novel targets for acupuncture-induced lowering of blood pressure in spontaneously hypertensive rats
Cited by: 1
Author(s): Jing Li, Chong Peng, Dongjian Lai, Yajing Fang, Daihong Luo, Zunming Zhou, Chenyun Li, Xinsheng Lai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-90515-w

Identification of BHLHE40 expression in peripheral blood mononuclear cells as a novel biomarker for diagnosis and prognosis of hepatocellular carcinoma
Cited by: 4
Author(s): Pattapon Kunadirek, Chaiyaboot Ariyachet, Supachaya Sriphoosanaphan, Nutcha Pinjaroen, Pongserath Sirichindakul, Intawat Nookaew, Natthaya Chuaypen, Pisit Tangkijvanich
Software Mentions: 1
Published: over 5 years ago

10.1186/s13072-021-00414-7

Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle
Cited by: 7
Author(s): Ilan M. Ruhr, Jacob Bierstedt, Turk Rhen, Debojyoti Das, Sunil Kumar Singh, Soleille Miller, Dane A. Crossley, Gina L. J. Galli
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-03987-0

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids
Cited by: 24
Author(s): Bart Cuypers, Malgorzata A. Domagalska, Pieter Meysman, Géraldine De Muylder, Manu Vanaerschot, Hideo Imamura, Franck Dumetz, Thomas-Wolf Verdonckt, Peter J. Myler, Gowthaman Ramasamy, Kris Laukens, Jean‐Claude Dujardin
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03687-9

RNAseq based transcriptomics study of SMCs from carotid atherosclerotic plaque: BMP2 and IDs proteins are crucial regulators of plaque stability
Cited by: 19
Author(s): Iraide Alloza, Haize Goikuria, Juan Luis Idro, Juan Carlos Triviño, José María Fernández Velasco, Elena Elizagaray, María García-Barcina, Genoveva Montoya‐Murillo, E. Sarasola, Reyes Vega Manrique, María Del Mar Freijo, Koen Vandenbroeck
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02873-z

Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium
Cited by: 13
Author(s): Ofir Haramati, Anastasia Brodov, Idan Yelin, Avigail Atir-Lande, Nitzan Samra, Yoav Arava
Software Mentions: 1
Published: over 9 years ago

10.3390/cells10030536

Thyroid Hormone Receptor Is Essential for Larval Epithelial Apoptosis and Adult Epithelial Stem Cell Development but Not Adult Intestinal Morphogenesis during Xenopus tropicalis Metamorphosis
Cited by: 18
Author(s): Yuki Shibata, Yuta Tanizaki, Hongen Zhang, Hangnoh Lee, Mary Dasso, Yun‐Bo Shi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02298-8

Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize
Cited by: 25
Author(s): Vívian de Jesus Miranda, William F. Porto, Gabriel da Rocha Fernandes, Robert Pogue, Diego O. Nolasco, Ana Cláudia Guerra Araújo, L. V. Cota, Camila Guimarães de Freitas, Simoni Campos Dias, Octávio L. Franco
Software Mentions: 1
Published: over 9 years ago

10.1038/s42003-020-1018-x

In vivo dual RNA-seq reveals that neutrophil recruitment underlies differential tissue tropism of Streptococcus pneumoniae
Cited by: 20
Author(s): Vikrant Minhas, Rieza Aprianto, Lauren J. McAllister, Hui Wang, Shannon C. David, Kimberley T. McLean, Iain Comerford, Shaun R. McColl, James C. Paton, Jan‐Willem Veening, Claudia Trappetti
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-90633-5

Comparative transcriptome analysis reveals key genes associated with pigmentation in radish (Raphanus sativus L.) skin and flesh
Cited by: 8
Author(s): Jifang Zhang, Jian Zhao, Qunyun Tan, Xiaojun Qiu, Shuqi Mei
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02397-6

A-to-I editing in human miRNAs is enriched in seed sequence, influenced by sequence contexts and significantly hypoedited in glioblastoma multiforme
Cited by: 52
Author(s): Deepanjan Paul, Ashis Narayan Sinha, Ray A, Megha Lal, Subhashree Nayak, Anchal Sharma, Bharati Mehani, Debasish Mukherjee, Saurabh V. Laddha, Ashish Suri, Chitra Sarkar, Arijit Mukhopadhyay
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-90672-y

Rootstock effects on scion gene expression in maritime pine
Cited by: 10
Author(s): Miriam López‐Hinojosa, Nuria de María, M. Ángeles Guevara, María Dolores Vélez, José Antonio Cabezas, Luis Manuel Díaz, José Antonio Mancha, Alberto Pizarro, Lorenzo Federico Manjarrez, Carmen Collada, Carmen Dı́az-Sala, M T Cervera Goy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02628-w

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85
Cited by: 12
Author(s): Chia-Wei Wu, Thomas E. Spike, Dawn M. Klingeman, Miguel Rodríguez, Virgil R. Bremer, Steven D. Brown
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01109-4

Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation
Cited by: 27
Author(s): Janne Purhonen, Jayasimman Rajendran, Matthias Mörgelin, Kristiina Uusi-Rauva, Shintaro Katayama, Kaarel Krjutškov, Elisabet Einarsdottir, Vidya Velagapudi, Juha Kere, Matti Jauhiainen, Vineta Fellman, Jukka Kallijärvi
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-91269-1

Identifying molecular pathways and candidate genes associated with knob traits by transcriptome analysis in the goose (Anser cygnoides)
Cited by: 3
Author(s): Wangyang Ji, li E Hou, Xi Yuan, Tiantian Gu, ZhuoYu Chen, Yu Zhang, Yang Zhang, Guohong Chen, Qi Xu, Wenming Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/srep45458

Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses
Cited by: 29
Author(s): Andrea Vannini, Eva Pinatel, Paolo Emidio Costantini, Simone Pelliciari, Davide Roncarati, Simone Puccio, Gianluca De Bellis, Clelia Peano, Alberto Danielli
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.01253-16

Genetic Dissection of the Type VI Secretion System in Acinetobacter and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis
Cited by: 82
Author(s): Brent S. Weber, Seth W. Hennon, Meredith S. Wright, Nichollas E. Scott, Véronique de Berardinis, Leonard J. Foster, Juan A. Ayala, Mark D. Adams, Mario F. Feldman
Software Mentions: 1
Published: almost 10 years ago

10.1038/s42003-021-02453-y

Human embryonic stem cell-derived cardiomyocyte platform screens inhibitors of SARS-CoV-2 infection
Cited by: 10
Author(s): Thomas Williams, Maria Colzani, Robyn Macrae, Emma Robinson, Stuart Bloor, Edward Jd Greenwood, Jun Zhan, Gregory Strachan, Rhoda E. Kuc, Duuamene Nyimanu, Janet J. Maguire, Paul J. Lehner, Sanjay Sinha, Anthony P. Davenport
Software Mentions: 1
Published: about 5 years ago

10.1038/srep45327

Copy number variation profile in the placental and parental genomes of recurrent pregnancy loss families
Cited by: 26
Author(s): Laura Kasak, Kristiina Rull, Siim Sõber, Maris Laan
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.02193-16

Transcriptome Remodeling of Acinetobacter baumannii during Infection and Treatment
Cited by: 32
Author(s): Meredith S. Wright, Michael Jacobs, Robert A. Bonomo, Mark D. Adams
Software Mentions: 1
Published: over 9 years ago

10.1172/jci.insight.144351

Acyl-CoA synthetase 6 is required for brain docosahexaenoic acid retention and neuroprotection during aging
Cited by: 14
Author(s): Regina F. Fernandez, Andrea M. Pereyra, Victoria D Diaz, Emily S Wilson, Karen Litwa, Jonatan Martínez‐Gardeazabal, Shelley N. Jackson, J. Thomas Brenna, Brian P. Hermann, Jeffrey B. Eells, Jessica M. Ellis
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.142205

Selective inhibition of JAK3 signaling is sufficient to reverse alopecia areata
Cited by: 32
Author(s): Zhijun Dai, James Chen, Yi‐Lu Chang, Angela M. Christiano
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00730-17

RIP-Seq Suggests Translational Regulation by L7Ae in Archaea
Cited by: 19
Author(s): Michael Daume, Michaël Uhl, Rolf Backofen, Lennart Randau
Software Mentions: 1
Published: about 9 years ago

10.1172/jci.insight.144799

Myofibroblast dedifferentiation proceeds via distinct transcriptomic and phenotypic transitions
Cited by: 36
Author(s): S.M. Fortier, L.R.K. Penke, Dana King, Tho X. Pham, Giovanni Ligresti, Marc Peters‐Golden
Software Mentions: 1
Published: over 5 years ago

10.1128/JVI.02106-18

Investigating the Biological Relevance of In Vitro -Identified Putative Packaging Signals at the 5′ Terminus of Satellite Tobacco Necrosis Virus 1 Genomic RNA
Cited by: 9
Author(s): Ioly Kotta‐Loizou, Hadrien Peyret, Keith Saunders, Robert H.A. Coutts, George P. Lomonossoff
Software Mentions: 1
Published: over 7 years ago

10.3390/nu10091291

Dietary Cows’ Milk Protein A1 Beta-Casein Increases the Incidence of T1D in NOD Mice
Cited by: 25
Author(s): Joanne S. J. Chia, Jennifer L. McRae, Ashwantha Kumar Enjapoori, Christophe Lefèvre, Sonja Kukuljan, Karen M. Dwyer
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.01678-17

Human Placental Syncytiotrophoblasts Restrict Toxoplasma gondii Attachment and Replication and Respond to Infection by Producing Immunomodulatory Chemokines
Cited by: 48
Author(s): Stephanie E. Ander, Elizabeth N. Rudzki, Nitin Arora, Yoel Sadovsky, Carolyn B. Coyne, Jon P. Boyle
Software Mentions: 1
Published: over 8 years ago

10.1172/jci.insight.139965

Stem cell transplantation uncovers TDO-AHR regulation of lung dendritic cells in herpesvirus-induced pathology
Cited by: 5
Author(s): Stephen J. Gurczynski, Nicolas L Pereira, Steven Hrycaj, Carol A. Wilke, Rachel L. Zemans, Bethany B. Moore
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02430-17

Physiological Effect of XoxG(4) on Lanthanide-Dependent Methanotrophy
Cited by: 42
Author(s): Yue Zheng, Jing Huang, Feng Zhao, Ludmila Chistoserdova
Software Mentions: 1
Published: over 8 years ago

10.1172/jci.insight.141776

Sodium channel β1 subunits participate in regulated intramembrane proteolysis-excitation coupling
Cited by: 11
Author(s): Alexandra A. Bouza, Nnamdi Edokobi, Samantha L. Hodges, Alexa M Pinsky, James Offord, Lin Piao, Yan Zhao, Anatoli N. Lopatin, Luis F. Lopez-Santiago, Lori L. Isom
Software Mentions: 1
Published: over 5 years ago

10.1128/JVI.00102-19

RIG-I Activation by a Designer Short RNA Ligand Protects Human Immune Cells against Dengue Virus Infection without Causing Cytotoxicity
Cited by: 9
Author(s): Victor Ho, Hui Yee Yong, Marion Chevrier, Vipin Narang, Josephine Lum, Ying-Xiu Toh, Bernett Lee, Jinmiao Chen, Ern Yu Tan, Dahai Luo, Katja Fink
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01222-18

Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools
Cited by: 24
Author(s): Bartram L Smith, Guifang Chen, Claus O. Wilke, Robert M. Krug
Software Mentions: 1
Published: about 8 years ago

10.3390/cells10061543

Profiling of Extracellular Small RNAs Highlights a Strong Bias towards Non-Vesicular Secretion
Cited by: 8
Author(s): Helena Sork, Mariana Conceição, Giulia Corso, Joel Z. Nordin, Yi Xin Fiona Lee, Kaarel Krjutškov, Jakub Orzechowski Westholm, Pieter Vader, Marie J. Pauwels, Roosmarijn E. Vandenbroucke, Matthew J. Wood, Samir El Andaloussi, Imre Mäger
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01347-18

Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System
Cited by: 20
Author(s): Martha M. Liu, Christine J. Boinett, Anson Chan, Julian Parkhill, M.E.P. Murphy, Erin C. Gaynor
Software Mentions: 1
Published: about 8 years ago

10.1002/ctm2.239

Identification of tumor‐associated macrophage subsets that are associated with breast cancer prognosis
Cited by: 24
Author(s): Elisabeth Strack, Alex Rolfe, Annika F. Fink, Katrin Bankov, Tobias Schmid, Christine Solbach, Rajkumar Savai, Weixiao Sha, Leon P. Pradel, Sven Hartmann, Bernhard Brüne, Andreas Weigert
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.139783

Assessment of HIV-1 integration in tissues and subsets across infection stages
Cited by: 10
Author(s): Vincent H. Wu, Christopher L. Nobles, Leticia Kuri-Cervantes, Kevin McCormick, J.K. Everett, Son Nguyen, Perla M. Del Río Estrada, Mauricio González-Navarro, Fernanda Torres-Ruiz, Santiago Ávila‐Ríos, Gustavo Reyes‐Terán, Frederic D. Bushman, Michael R. Betts
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.140458

CD47 prevents the elimination of diseased fibroblasts in scleroderma
Cited by: 22
Author(s): Tristan Lerbs, Lü Cui, Megan E. King, Tim Chai, Claire Muscat, Lorinda Chung, Ryanne A. Brown, Kerri E. Rieger, Tyler Shibata, Gerlinde Wernig
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01276-18

Arylvinylpiperazine Amides, a New Class of Potent Inhibitors Targeting QcrB of Mycobacterium tuberculosis
Cited by: 50
Author(s): Caroline S. Foo, Andréanne Lupien, Maryline Kienle, Anthony Vocat, Andrej Benjak, Raphael Sommer, Dirk A. Lamprecht, Adrie J. C. Steyn, Kévin Pethe, Jérémie Piton, Karl‐Heinz Altmann, Stewart T. Cole
Software Mentions: 1
Published: almost 8 years ago

10.1002/ctm2.220

Long noncoding RNA CASC11 promotes hepatocarcinogenesis and HCC progression through EIF4A3‐mediated E2F1 activation
Cited by: 50
Author(s): Haoming Song, Yan Liu, Xinquan Li, Shuhua Chen, Ruili Xie, Da-Bao Chen, Hua-Wu Gao, Guoquan Wang, Bao-Jun Cai, Xiangyu Yang
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.120723

Placental polyamine metabolism differs by fetal sex, fetal growth restriction, and preeclampsia
Cited by: 54
Author(s): Sungsam Gong, Ulla Sovio, Irving L.M.H. Aye, Francesca Gaccioli, Justyna Dopierała, Michelle D. Johnson, Angela Wood, Emma Cook, Benjamin Jenkins, Albert Koulman, Robert A. Casero, Miguel Constância, D. Stephen Charnock-Jones, Gordon C. S. Smith
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.02189-18

Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member
Cited by: 34
Author(s): Bela Hausmann, Claus Pelikan, Thomas Rattei, Alexander Loy, Michael Pester
Software Mentions: 1
Published: over 7 years ago

10.1002/jbm4.10483

Skeletal Response to Insulin in the Naturally Occurring Type 1 Diabetes Mellitus Mouse Model
Cited by: 7
Author(s): Manisha Dixit, Zhongbo Liu, Sher Bahadur Poudel, Gozde Yildirim, Yanjiao Zhang Zhang, Shilpa Mehta, Omer Murik, Gheona Altarescu, Yoshifumi Kobayashi, Emi Shimizu, Mitchell B. Schaffler, Shoshana Yakar
Software Mentions: 1
Published: over 5 years ago

10.1186/s40635-021-00406-7

Progranulin signaling in sepsis, community-acquired bacterial pneumonia and COVID-19: a comparative, observational study
Cited by: 6
Author(s): Florian Brandes, Melanie Borrmann, Dominik Buschmann, Agnes S. Meidert, Marlene Reithmair, Markus Langkamp, Lutz Pridzun, Benedikt Kirchner, Jean-Noël Billaud, Nirav M. Amin, Joseph C. Pearson, Matthias Klein, Daniela Hauer, Clarissa Gevargez Zoubalan, Anja Lindemann, Alexander Choukèr, Thomas W. Felbinger, Ortrud K. Steinlein, Michael W. Pfaffl, Inès Kaufmann, Gustav Schelling
Software Mentions: 1
Published: about 5 years ago

10.1128/JVI.01094-19

Pharmacological Modulation of the Wnt/β-Catenin Pathway Inhibits Proliferation and Promotes Differentiation of Long-Lived Memory CD4 + T Cells in Antiretroviral Therapy-Suppressed Simian Immunodeficiency Virus-Infected Macaques
Cited by: 13
Author(s): Maud Mavigner, Michelle Zanoni, Gregory K. Tharp, Jakob Habib, Cameron Mattingly, Mathias Lichterfeld, Melon T. Nega, Thomas H. Vanderford, Steven E. Bosinger, Ann Chahroudi
Software Mentions: 1
Published: almost 7 years ago

10.3390/insects12080736

Transcriptome Analysis of Hormone-and Cuticle-Related Genes in the Development Process of Deutonymph in Tetranychus urticae
Cited by: 2
Author(s): Gang Li, Xinyao Gu, Shun‐Hua Gui, Jianjun Guo, Tian‐Ci Yi, Dao‐Chao Jin
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00273-19

Mycobacterial SigA and SigB Cotranscribe Essential Housekeeping Genes during Exponential Growth
Cited by: 23
Author(s): Kelley Hurst-Hess, Ratna Biswas, Yong Yang, Paulami Rudra, Erica Lasek‐Nesselquist, Phalguni Ghosh
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.02469-18

Antibody Treatment against Angiopoietin-Like 4 Reduces Pulmonary Edema and Injury in Secondary Pneumococcal Pneumonia
Cited by: 19
Author(s): Liang Li, Benjamin Jie Wei Foo, Ka Wai Kwok, Noriho Sakamoto, Hiroshi Mukae, Koichi Izumikawa, Stéphane Mandard, Jean‐Pierre Quenot, Laurent Lagrost, Wooi Keong Teh, Gurjeet S. Kohli, Pengcheng Zhu, Hyungwon Choi, Martin L. Buist, Ju Ee Seet, Liang Yang, Fang He, Vincent T. K. Chow, Nguan Soon Tan
Software Mentions: 1
Published: about 7 years ago

10.3390/nu12041140

Key Vitamin D Target Genes with Functions in the Immune System
Cited by: 58
Author(s): Oona Koivisto, Andrea Hanel, Carsten Carlberg
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-93820-6

Physiological and transcriptome analyses for assessing the effects of exogenous uniconazole on drought tolerance in hemp (Cannabis sativa L.)
Cited by: 13
Author(s): Ying Jiang, Yufeng Sun, Dianfeng Zheng, Chengwei Han, Kun Cao, Lei Xu, Shuxia Liu, Yongsong Cao, Naijie Feng
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0201278

Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny
Cited by: 14
Author(s): Anne‐Catrin Adam, Kaja H. Skjærven, Paul Whatmore, Mari Moren, Kai Kristoffer Lie
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0190075

The impact of persistent bacterial bronchitis on the pulmonary microbiome of children
Cited by: 22
Author(s): Leah Cuthbertson, Vanessa Craven, Lynne Bingle, William Cookson, Mark L. Everard, Miriam F. Moffatt
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.50226

An RNAi screen unravels the complexities of Rho GTPase networks in skin morphogenesis
Cited by: 8
Author(s): Mélanie Laurin, Nicholas C. Gomez, John Levorse, Ataman Sendoel, Megan Sribour
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.00255

Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset
Cited by: 9
Author(s): Ahmed Abidi, Thomas Laurent, Gaëlle Bériou, Laurence Bouchet-Delbos, Cynthia Fourgeux, Cédric Louvet, Raja Marrakchi, Jérémie Poschmann, Régis Josien, Jérôme C. Martin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0230110

Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing)
Cited by: 22
Author(s): Luis Villar, Ixia Lienqueo, Analía Llanes, Pamela Rojas, J. Pérez, Francisco Correa, Boris Sagredo, Oscar Masciarelli, Virginia Luna, Rubén Almada
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.02505

Precise Delineation and Transcriptional Characterization of Bovine Blood Dendritic-Cell and Monocyte Subsets
Cited by: 22
Author(s): Stephanie C. Talker, Arnaud Baumann, G. Tuba Barut, Irene Keller, Rémy Bruggmann, Artur Summerfield
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0237023

Ultraviolet B irradiation enhances the secretion of exosomes by human primary melanocytes and changes their exosomal miRNA profile
Cited by: 17
Author(s): Zeren Shen, Jiaqi Sun, Jinjin Shao, Jinghong Xu
Software Mentions: 1
Published: about 6 years ago

10.1186/s11689-020-09317-2

Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: identification of candidate genes for the neurodevelopmental and eye manifestations
Cited by: 11
Author(s): He-Qun Liu, Jesse Barnes, Erika Pedrosa, Nathaniel S. Herman, Franklin Salas, Ping Wang, Deyou Zheng, Herbert M. Lachman
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.713704

IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells
Cited by: 3
Author(s): Wissam Charab, Matthew G. Rosenberger, Haridha Shivram, Justin Mirazee, Moses Donkor, Soumya Shekhar, Donjeta Gjuka, Kimberly H. Khoo, Jin Eyun Kim, Vishwanath R. Iyer, George Georgiou
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0213298

Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene
Cited by: 17
Author(s): Pablo del Cerro, Manuel Megı́as, Francisco Javier López‐Baena, Antonio Gil‐Serrano, Francisco Javier Ollero
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.590870

The Neat Dance of COVID-19: NEAT1, DANCR, and Co-Modulated Cholinergic RNAs Link to Inflammation
Cited by: 32
Author(s): Chanan Meydan, Nimrod Madrer, Hermona Soreq
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0256390

Subanesthetic ketamine rapidly alters medial prefrontal miRNAs involved in ubiquitin-mediated proteolysis
Cited by: 3
Author(s): Yun-Shik Choi, Baeksun Kim, Suji Ham, Shin-Ho Chung, Sungho Maeng, Hye Sun Kim, Heh In Im
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.686462

Enhanced Expression of Autoantigens During SARS-CoV-2 Viral Infection
Cited by: 17
Author(s): Narjes Saheb Sharif-Askari, Fatemeh Saheb Sharif-Askari, Samrein B M Ahmed, Suad Hannawi, Rifat Hamoudi, Qutayba Hamid, Rabih Halwani
Software Mentions: 1
Published: about 5 years ago

10.1590/0074-02760200547

Transcriptome comparison of dengue-susceptible and -resistant field derived strains of Colombian Aedes aegypti using RNA-sequencing
Cited by: 3
Author(s): Heather Coatsworth, Paola A. Caicedo, Geoffrey L. Winsor, Fiona S. L. Brinkman, Clara B. Ocampo, Carl Lowenberger
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0225564

De novo transcriptome sequence of Senna tora provides insights into anthraquinone biosynthesis
Cited by: 13
Author(s): Sang-Ho Kang, Woo-Haeng Lee, Chang-Muk Lee, Joon-Soo Sim, So Youn Won, So-Ra Han, Soo-Jin Kwon, Jung Sun Kim, Chang-Kug Kim, Tae‐Jin Oh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0180282

Molecular characterization of the acquisition of longevity during seed maturation in soybean
Cited by: 58
Author(s): Juliana Joice Pereira Lima, Julia Buitink, David Lalanne, Rubiana Falopa Rossi, Sandra Pelletier, Edvaldo Aparecido Amaral da Silva, Olivier Leprince
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.58295

Crosstalk between nitric oxide and retinoic acid pathways is essential for amphioxus pharynx development
Cited by: 4
Author(s): Filomena Caccavale, Giovanni Annona, Lucie Subirana, Héctor Escrivà, Stéphanie Bertrand, Salvatore D’Aniello
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0175924

GmDREB1 overexpression affects the expression of microRNAs in GM wheat seeds
Cited by: 7
Author(s): Qiyan Jiang, Xianjun Sun, Fengjuan Niu, Zheng Hu, Rui Chen, Hui Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2021.698565

p16INK4a Regulates Cellular Senescence in PD-1-Expressing Human T Cells
Cited by: 13
Author(s): Valérie Janelle, Mathieu Neault, Marie-Ève Lebel, Dave Maurice De Sousa, Salix Boulet, Ludovic Durrieu, Cédric Carli, Chloé Muzac, Sébastien Lemieux, Nathalie Labrecque, Heather J. Melichar, Frédérick A. Mallette, Jean-Sébastien Delisle
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.695373

Identification of Genes Encoding Antimicrobial Proteins in Langerhans Cells
Cited by: 0
Author(s): Aislyn Oulee, Feiyang Ma, Rosane M. B. Teles, Bruno Jorge de Andrade Silva, Matteo Pellegrini, Eynav Klechevsky, Andrew N. Harman, Jake W. Rhodes, Robert L. Modlin
Software Mentions: 1
Published: about 5 years ago

10.1007/s12032-021-01572-0

The novel LSD1 inhibitor ZY0511 suppresses diffuse large B-cell lymphoma proliferation by inducing apoptosis and autophagy
Cited by: 6
Author(s): Huan Liu, Jing Wei, Na Sang, Xi Zhong, Xia Zhou, Xinyu Yang, Jing Zhang, Zeping Zuo, Yang Zhou, Shengyong Yang, Jun-Rong Du, Yinglan Zhao
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2019.00446

Extracellular Vesicles Mediate Mesenchymal Stromal Cell-Dependent Regulation of B Cell PI3K-AKT Signaling Pathway and Actin Cytoskeleton
Cited by: 60
Author(s): Annalisa Adamo, Jessica Brandi, Simone Caligola, Pietro Delfino, Ilaria Tanasi, Roberta Carusone, Daniela Cecconi, Rosalba Giugno, Marcello Manfredi, Elisa Robotti, Emílio Marengo, Giulio Bassi, Paul Takam Kamga, Giada Dal Collo, Alessandro Gatti, Angela Mercuri, Maddalena Arigoni, Martina Olivero, Raffaele Calogero, Mauro Krampera
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.664619

Low Innate Immunity and Lagged Adaptive Immune Response in the Re-Tested Viral RNA Positivity of a COVID-19 Patient
Cited by: 5
Author(s): Changchun Lai, Xinglong Liu, Qihong Yan, Hualiang Lv, Lei Zhou, Lirong Hu, Yong Cai, Guoqiang Wang, Yufeng Chen, Renjie Chai, Zhenwei Liu, Yaobo Xu, Wendong Huang, Fei Xiao, Linhui Hu, Yaocai Li, Jianhong Huang, Qiang Zhou, Luqian Li, Tao Peng, Haiye Zhang, Zhenhui Zhang, Ling Chen, Chunbo Chen, Tianxing Ji
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0178302

A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling
Cited by: 126
Author(s): Joanne M. Yeakley, Peter J. Shepard, Diana E. Goyena, Harper VanSteenhouse, J. McComb, Bruce Seligmann
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2018.01290

T Cell Receptor–Major Histocompatibility Complex Interaction Strength Defines Trafficking and CD103+ Memory Status of CD8 T Cells in the Brain
Cited by: 12
Author(s): Anna Smerdel-Ramoya, Norimasa Yoshida, Elizabeth Motunrayo Kolawole, Harshil Patel, Brian D. Evavold, Eva‐Maria Frickel
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.623610

Therapeutic Potential of TNFα and IL1β Blockade for CRS/ICANS in CAR-T Therapy via Ameliorating Endothelial Activation
Cited by: 15
Author(s): Yunshuo Chen, Ranran Li, Siqi Shang, Xiaofeng Yang, Lei Li, Wenbo Wang, Yueying Wang
Software Mentions: 1
Published: over 5 years ago

10.1051/bmdcn/2019090427

The RNA degradation pathway is involved in PPARα-modulated anti-oral tumorigenesis
Cited by: 13
Author(s): Nen Chung Chang, Yiping Huang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0172671

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing
Cited by: 22
Author(s): Christopher A. Werley, Miao‐Ping Chien, Jellert T. Gaublomme, Karthik Shekhar, Vincent Butty, B. Alexander Yi, Joel M. Kralj, William Bloxham, Laurie A. Boyer, Aviv Regev, Adam E. Cohen
Software Mentions: 1
Published: over 9 years ago

10.1155/2019/7149296

miRNA and mRNA Integration Network Construction Reveals Novel Key Regulators in Left-Sided and Right-Sided Colon Adenocarcinoma
Cited by: 15
Author(s): Likun Yang, Li Lin, Jing Ma, Shimin Yang, Chao Zou, Xiaozhou Yu
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.624753

Exosomes Derived From Heat Stroke Cases Carry miRNAs Associated With Inflammation and Coagulation Cascade
Cited by: 9
Author(s): Yue Li, Qiang Wen, Huaisheng Chen, Xinhui Wu, Bin Liu, Hui Li, Lei Su, Huasheng Tong
Software Mentions: 1
Published: about 5 years ago

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