bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-21490-y

Short-term acclimation in adults does not predict offspring acclimation potential to hypoxia
Cited by: 11
Author(s): Manuela Truebano, Oliver Tills, Michael T. Collins, Charlotte Clarke, Emma Shipsides, Charlotte Wheatley, John I. Spicer
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21377-y

Co-expression network analysis and cis-regulatory element enrichment determine putative functions and regulatory mechanisms of grapevine ATL E3 ubiquitin ligases
Cited by: 6
Author(s): D. Wong, Pietro Ariani, Simone D. Castellarin, Annalisa Polverari, Elodie Vandelle
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21478-8

Oligomeric proanthocyanidins (OPCs) target cancer stem-like cells and suppress tumor organoid formation in colorectal cancer
Cited by: 52
Author(s): Shusuke Toden, Preethi Ravindranathan, Jin Gu, Jacob Cardenas, Madelaine Yuchang, Ajay Goel
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20225634

Identification of MicroRNAs That Respond to Soybean Cyst Nematode Infection in Early Stages in Resistant and Susceptible Soybean Cultivars
Cited by: 15
Author(s): Piao Lei, Bing Han, Yuanyuan Wang, Xiaofeng Zhu, Yue Xuan, Xiaoyu Liu, Haiyan Fan, Lijie Chen, Yuxi Duan
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20225720

A Gene Signature of Survival Prediction for Kidney Renal Cell Carcinoma by Multi-Omic Data Analysis
Cited by: 30
Author(s): Fuyan Hu, Wenying Zeng, Xiaoping Li
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-22491-7

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis
Cited by: 37
Author(s): Jocelyn Sietsma Penington, Megan A. S. Penno, Katrina Ngui, Nadim J. Ajami, Alexandra J. Roth‐Schulze, Stephen Wilcox, Esther Bandala‐Sanchez, John M. Wentworth, Simon C. Barry, Cheryl Y. Brown, Jennifer Couper, Joseph F. Petrosino, Anthony T. Papenfuss, Leonard C. Harrison
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-016-2866-0

Canalization of gene expression is a major signature of regulatory cold adaptation in temperate Drosophila melanogaster
Cited by: 28
Author(s): Korbinian von Heckel, Wolfgang Stephan, Stephan Hütter
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-25879-7

Linking cervicovaginal immune signatures, HPV and microbiota composition in cervical carcinogenesis in non-Hispanic and Hispanic women
Cited by: 135
Author(s): Paweł Łaniewski, Dominique Barnes, Alison Goulder, Haiyan Cui, Denise J. Roe, Dana M. Chase, Melissa M. Herbst-Kralovetz
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-5690-5

Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss
Cited by: 13
Author(s): Hao Ma, Kyle E. Martin, Doug Dixon, Alvaro G. Hernandez, Gregory M. Weber
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-21965-y

HDAC genes play distinct and redundant roles in Cryptococcus neoformans virulence
Cited by: 40
Author(s): Fabiana Brandão, Shannon K. Esher, Kyla S. Ost, Kaila M. Pianalto, Connie B. Nichols, Larissa Fernandes, Anamélia Lorenzetti Bocca, Márcio José Poças-Fonseca, J. Andrew Alspaugh
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-26420-6

Deltamethrin resistance in the salmon louse, Lepeophtheirus salmonis (Krøyer): Maternal inheritance and reduced apoptosis
Cited by: 14
Author(s): Marit Jørgensen Bakke, Celia Agustí, Jo C. Bruusgaard, Arvind Sundaram, Tor Einar Horsberg
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3696-4

Comparative transcriptomics of mountain pine beetle pheromone-biosynthetic tissues and functional analysis of CYP6DE3
Cited by: 26
Author(s): Jeffrey A. Nadeau, Julia Petereit, Richard L. Tillett, Ki‐Hong Jung, Misha Fotoohi, Marina MacLean, Sharon M. Young, Karen Schlauch, Gary J. Blomquist, Claus Tittiger
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-26651-7

RNA Sequencing Reveals Novel Transcripts from Sympathetic Stellate Ganglia During Cardiac Sympathetic Hyperactivity
Cited by: 12
Author(s): Emma N. Bardsley, Harvey Davis, Olujimi A. Ajijola, Keith J. Buckler, Jeffrey L. Ardell, Kalyanam Shivkumar, David J. Paterson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-27305-4

Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex
Cited by: 10
Author(s): Vijay Kumar Dalal, Shlomi Dagan, Gilgi Friedlander, Elinor Aviv‐Sharon, Ralph Bock, Dana Charuvi, Ziv Reich, Zach Adam
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-27307-2

A seven-lncRNA signature predicts overall survival in esophageal squamous cell carcinoma
Cited by: 55
Author(s): Yu Mao, Zhanzhao Fu, Yunjie Zhang, Dong Liu, Yanqiu Zhang, Qiang Zhang, Xin Li, Jia Liu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-015-1867-8

RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection
Cited by: 39
Author(s): Esther Wilk, Ashutosh Kumar Pandey, Sarah R. Leist, Bastian Hatesuer, Matthias Preuße, Claudia Pommerenke, Junxi Wang, Klaus Schughart
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20246220

Translational Regulation of Pmt1 and Pmt2 by Bfr1 Affects Unfolded Protein O-Mannosylation
Cited by: 5
Author(s): Joan Castells-Ballester, Natalie Rinis, Ilgin Kotan, Lihi Gal, Daniela Bausewein, Ilia Kats, Ewa Zatorska, Günter Krämer, Bernd Bukau, Maya Schuldiner
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-27086-w

Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica
Cited by: 48
Author(s): Hugo Varet, Yana Shaulov, Odile Sismeiro, Meirav Trebicz-Geffen, Rachel Legendre, Jean‐Yves Coppée, Serge Ankri, Nancy Guillén
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-28117-2

Angiogenin and Osteoprotegerin are type II muscle specific myokines protecting pancreatic beta-cells against proinflammatory cytokines
Cited by: 24
Author(s): Sabine Rütti, Rodolphe Dusaulcy, Jørn Bindslev Hansen, Cédric Howald, Emmanouil T. Dermitzakis, Bente Klarlund Pedersen, M. Pinget, Peter Plomgaard, Karim Bouzakri
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07856-z

Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance
Cited by: 9
Author(s): Ke Chen, Yajun Peng, Liang Zhang, Long Wang, Donghai Mao, Zixiang Zhao, Lianyang Bai, Lifeng Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4773-z

Characterization of microRNA and mRNA expression profiles in skin tissue between early-feathering and late-feathering chickens
Cited by: 9
Author(s): Guijun Fang, Xiaoyun Jia, Hua Li, Shuo Tan, Qinghua Nie, Hui Yu, Ying Yang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-28795-y

VHL inactivation without hypoxia is sufficient to achieve genome hypermethylation
Cited by: 7
Author(s): Artemov Av, Nadezhda Zhigalova, Svetlana Zhenilo, Alexander Mazur, Egor Prokhortchouk
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07561-x

Methamphetamine-induced changes in myocardial gene transcription are sex-dependent
Cited by: 5
Author(s): Hasitha Chavva, Daniel A. Brazeau, James Denvir, Donald A. Primerano, Jun Fan, Sarah L. Seeley, Boyd R. Rorabaugh
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20246341

Genetic and Physiological Dissection of Photosynthesis in Barley Exposed to Drought Stress
Cited by: 26
Author(s): Agata Daszkowska‐Golec, Anna Collin, Krzysztof Sitko, Agnieszka Janiak, Hazem M. Kalaji, Iwona Szarejko
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246206

Assessment of the Effects of Bisphenol A on Dopamine Synthesis and Blood Vessels in the Goldfish Brain
Cited by: 9
Author(s): Qing Wang, Fangmei Lin, Qi He, Xiaochun Liu, Shiqiang Xiao, Li Zheng, Huirong Yang, Haifeng Zhao
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246114

Deciphering Genetic Architecture of Adventitious Root and Related Shoot Traits in Populus Using QTL Mapping and RNA-Seq Data
Cited by: 24
Author(s): Peng Sun, Huixia Jia, Yahong Zhang, Jianbo Li, Mengzhu Lu, Jianjun Hu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-30122-4

Comprehensive profiling of transcriptional networks specific for lactogenic differentiation of HC11 mammary epithelial stem-like cells
Cited by: 13
Author(s): Trinadha Rao Sornapudi, Rakhee Nayak, Prashanth Kumar Guthikonda, Anil Kumar Pasupulati, Srinivas Kethavath, Vanita Uppada, Sukalpa Mondal, Sailu Yellaboina, Sreenivasulu Kurukuti
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-018-5240-6

Yerba mate (Ilex paraguariensis, A. St.-Hil.) de novo transcriptome assembly based on tissue specific genomic expression profiles
Cited by: 8
Author(s): Jessica Vannina Fay, Chris Watkins, Ram Krishna Shrestha, Sergio Litwiñiuk, Liliana Noelia Talavera Stéfani, Cristian Antonio Rojas, Carina F. Argüelles, Julian A. Ferreras, Mario Cáccamo, Marcos Mateo Miretti
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-30783-1

Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort
Cited by: 36
Author(s): Thomas Gurry, Sean M. Gibbons, Le Thanh Tu Nguyen, Sean M. Kearney, Ashwin N. Ananthakrishnan, Xiaofang Jiang, Claire Duvallet, Zain Kassam, Eric J. Alm
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-30839-2

Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis
Cited by: 13
Author(s): Danitza Nébor, Joel H. Graber, Steven L. Ciciotte, Raymond F. Robledo, Julien Papoin, Emily Hartman, Kevin R. Gillinder, Andrew C. Perkins, James J. Bieker, Lionel Blanc, Luanne L. Peters
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-69242-1

Nephronectin promotes breast cancer brain metastatic colonization via its integrin-binding domains
Cited by: 11
Author(s): Synnøve Magnussen, Jimita Prashant Toraskar, Imola Wilhelm, János Haskó, Stine Figenschau, J. Molnár, Marit Seppola, Sonja Eriksson Steigen, Tonje S. Steigedal, Elin Hadler‐Olsen, István A. Krizbai, Gunbjørg Svineng
Software Mentions: 1
Published: over 6 years ago

10.1002/advs.202004507

Hypermethylation of Hepatic Mitochondrial <i>ND6</i> Provokes Systemic Insulin Resistance
Cited by: 19
Author(s): Ke Cao, Weiqiang Lv, Xueqiang Wang, Shanshan Dong, Xuyun Liu, Tie‐Lin Yang, Jie Xu, Mengqi Zeng, Xuan Zou, Daina Zhao, Qingqing Ma, Ming Tsan Lin, Long Jiang, Weijin Zang, Feng Gao, Zhihui Feng, Jiankang Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12863-017-0499-1

Transcriptome profiling of Arabian horse blood during training regimens
Cited by: 21
Author(s): Katarzyna Ropka‐Molik, Monika Stefaniuk‐Szmukier, Kacper Żukowski, Katarzyna Piórkowska, Artur Gurgul, Monika Bugno‐Poniewierska
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-68728-2

Necrotrophic lifestyle of Rhizoctonia solani AG3-PT during interaction with its host plant potato as revealed by transcriptome analysis
Cited by: 14
Author(s): Rita Zrenner, Franziska Genzel, Bart Verwaaijen, Daniel Wibberg, Rita Grosch
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-69355-7

Leprosy piRnome: exploring new possibilities for an old disease
Cited by: 7
Author(s): Pablo Pinto, Moisés Batista da Silva, Fabiano Cordeiro Moreira, Raquel Carvalho Bouth, Angélica Rita Gobbo, Tatiana Vinasco-Sandoval, André M. Ribeiro-dos-Santos, Amanda Ferreira Vidal, Josafá Gonçalves Barreto, Sidney Emanuel Batista dos Santos, John S. Spencer, Cláudio Guedes Salgado, Ândrea Ribeiro‐dos‐Santos
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-69729-x

Integrated transcriptomic and metabolomic analyses reveal the effects of callose deposition and multihormone signal transduction pathways on the tea plant-Colletotrichum camelliae interaction
Cited by: 12
Author(s): Qinhua Lu, Yuchun Wang, Fei Xiong, Xinyuan Hao, Xinzhong Zhang, Nana Li, Lu Wang, Jianming Zeng, Yajun Yang, Xinchao Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12863-019-0794-0

Comparative gene expression profiling of muscle reveals potential candidate genes affecting drip loss in pork
Cited by: 6
Author(s): Xueyan Zhao, Cheng Wang, Yanping Wang, Haichao Lin, Huaizhong Wang, Hongmei Hu, Jiying Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-70534-9

Discovery of small molecules that normalize the transcriptome and enhance cysteine cathepsin activity in progranulin-deficient microglia
Cited by: 11
Author(s): Maria Telpoukhovskaia, Kai Li, Faten A. Sayed, Jon Iker Etchegaray, Min Xie, Lihong Zhan, Yaqiao Li, Yungui Zhou, David Le, Ben A. Bahr, Matthew Bogyo, Sheng Ding, Li Gan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-70882-6

Molecular insights into biochar-mediated plant growth promotion and systemic resistance in tomato against Fusarium crown and root rot disease
Cited by: 55
Author(s): Amit K. Jaiswal, Noam Alkan, Y. Elad, Noa Sela, Amit Mary Philosoph, Ellen R. Graber, Omer Frenkel
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-018-1132-2

RNA sequencing of early round goby embryos reveals that maternal experiences can shape the maternal RNA contribution in a wild vertebrate
Cited by: 16
Author(s): Irene Adrian‐Kalchhauser, Jean‐Claude Walser, Michaela Schwaiger, Patricia Burkhardt‐Holm
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-70865-7

Hypoxic gene expression in chronic hepatitis B virus infected patients is not observed in state-of-the-art in vitro and mouse infection models
Cited by: 11
Author(s): Peter Jianrui Liu, James Michael Harris, Emanuele Marchi, Valentina D’Arienzo, Thomas Michler, Peter AC Wing, Andrea Magrì, Ana Maria Ortega-Prieto, Maarten van de Klundert, Jochen M. Wettengel, David Durantel, Marcus Dorner, Paul Klenerman, Ulrike Protzer, Efstathios S. Giotis, Jane A. McKeating
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21020373

Campylobacter concisus Impairs Sodium Absorption in Colonic Epithelium via ENaC Dysfunction and Claudin-8 Disruption
Cited by: 16
Author(s): Praveen Kumar Nattramilarasu, Roland Bücker, Fábia Daniela Lobo de Sá, Anja Fromm, Oliver Nagel, In-Fah Maria Lee, Eduard Butkevych, Soraya Mousavi, Claudia Genger, Sigri Kløve, Markus M. Heimesaat, Stefan Bereswill, Michal R. Schweiger, Hans Linde Nielsen, Hanno Troeger, Jörg–Dieter Schulzke
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-70190-z

Vitamin D ameliorates adipose browning in chronic kidney disease cachexia
Cited by: 16
Author(s): Wai W. Cheung, Wei Ding, Hal M. Hoffman, Zhen Wang, Hao Sheng, Ronghao Zheng, Alex Gonzalez, Junpeng Zhan, Ping Zhou, Shiping Li, Mary C. Esparza, Richard L. Lieber, Robert H. Mak
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71131-6

Improved locomotor recovery after contusive spinal cord injury in Bmal1−/− mice is associated with protection of the blood spinal cord barrier
Cited by: 17
Author(s): Łukasz P. Słomnicki, Scott A. Myers, Sujata Saraswat Ohri, Molly V. Parsh, Kariena R. Andres, Julia H. Chariker, Eric C. Rouchka, Michał Hetman
Software Mentions: 1
Published: about 6 years ago

10.3390/nu11102310

Loss of Diurnal Oscillatory Rhythms in Gut Microbiota Correlates with Changes in Circulating Metabolites in Type 2 Diabetic db/db Mice
Cited by: 35
Author(s): Eleni Beli, Samantha Prabakaran, Preethi Krishnan, Carmella Evans‐Molina, Maria B. Grant
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21020454

Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice
Cited by: 51
Author(s): Chuluuntsetseg Jadamba, Kiyoon Kang, Nam‐Chon Paek, Soo In Lee, Soo-Cheul Yoo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-71636-0

Transcriptional analysis of cleft palate in TGFβ3 mutant mice
Cited by: 4
Author(s): Jingpeng Liu, Sree Krishna Chanumolu, Kevin White, Mustafa Albahrani, Hasan H. Otu, Ali Nawshad
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21031068

StABI5 Involved in the Regulation of Chloroplast Development and Photosynthesis in Potato
Cited by: 15
Author(s): Tingting Zhu, Linxuan Li, Li Feng, And Maozhi Ren
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-71910-1

Hemoglobin stimulates vigorous growth of Streptococcus pneumoniae and shapes the pathogen's global transcriptome
Cited by: 14
Author(s): Fahmina Akhter, Edroyal Womack, Jorge E. Vidal, Yoann Le Breton, Kevin S. McIver, Shrikant Pawar, Zehava Eichenbaum
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-72290-2

Attenuating hypoxia driven malignant behavior in glioblastoma with a novel hypoxia-inducible factor 2 alpha inhibitor
Cited by: 16
Author(s): Jaclyn J. Renfrow, M. Soike, James L. West, Shakti Ramkissoon, Linda J. Metheny-Barlow, Ryan T. Mott, Carol Kittel, Ralph B. D’Agostino, Stephen B. Tatter, Adrian W. Laxton, Mark B. Frenkel, Gregory A. Hawkins, Denise Herpai, Stephanie Sanders, Jann N. Sarkaria, Glenn J. Lesser, Waldemar Debinski, Roy Strowd
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-016-0683-3

Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis
Cited by: 57
Author(s): Leslie S. Babonis, Mark Q. Martindale, Joseph F. Ryan
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-72389-6

Correlated chromosomal periodicities according to the growth rate and gene expression
Cited by: 6
Author(s): Liu Liu, Masaomi Kurokawa, Motoki Nagai, Shigeto Seno, Bei‐Wen Ying
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73075-3

SMRT sequencing of the full-length transcriptome of Odontotermes formosanus (Shiraki) under Serratia marcescens treatment
Cited by: 12
Author(s): Kai Feng, Xiaoyu Lu, Jian Luo, Fang Tang
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.3408

Comparative transcriptome analysis of isonuclear-alloplasmic lines unmask key transcription factor genes and metabolic pathways involved in sterility of maize CMS-C
Cited by: 13
Author(s): Chuan Li, Zhigang Zhao, Yongming Liu, Bing Liu, Shuxian Guan, Hai Long, Jing Wang, Yanli Lu, Mengji Cao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-72997-2

Comparative transcriptome analysis to identify candidate genes involved in 2-methoxy-1,4-naphthoquinone (MNQ) biosynthesis in Impatiens balsamina L.
Cited by: 7
Author(s): Lian Chee Foong, Jian Yi Chai, Anthony Siong Hock Ho, Brandon Pei Hui Yeo, Yang Mooi Lim, Sheh May Tam
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73170-5

Expression of fatty acid and triacylglycerol synthesis genes in interspecific hybrids of oil palm
Cited by: 3
Author(s): Ngoot‐Chin Ting, Katrina Sherbina, Jia-Shiun Khoo, Katialisa Kamaruddin, Pek-Lan Chan, Kuang‐Lim Chan, Mohd Amin Ab Halim, Kandha Sritharan, Zulkifli Yaakub, Sean Mayes, Festo Massawe, Peter L. Chang, Sergey V. Nuzhdin, Ravigadevi Sambanthamurthi, Rajinder Singh
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-020-01622-7

Chloroplast (Cp) Transcriptome of P. davidiana Dode×P. bolleana Lauch provides insight into the Cp drought response and Populus Cp phylogeny
Cited by: 4
Author(s): Xin Zhang, Chao Gu, Tianxu Zhang, Botong Tong, Heng Zhang, Yong-Pei Wu, Chuanping Yang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-73698-6

Acrylamide alters CREB and retinoic acid signalling pathways during differentiation of the human neuroblastoma SH-SY5Y cell line
Cited by: 21
Author(s): Kristina Attoff, Ylva Johansson, Andrea Cediel-Ulloa, Jessica Lundqvist, Rajinder K. Gupta, Florian Caiment, Anda R. Gliga, Anna Forsby
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21031141

Deep Sequencing MicroRNAs from Extracellular Membrane Vesicles Revealed the Association of the Vesicle Cargo with Cellular Origin
Cited by: 6
Author(s): Uyen Thi Trang Than, Dominic Guanzon, James A. Broadbent, Tony J. Parker, David I. Leavesley
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21031026

Integrated Genome-Wide Analysis of an Isogenic Pair of Pseudomonas aeruginosa Clinical Isolates with Differential Antimicrobial Resistance to Ceftolozane/Tazobactam, Ceftazidime/Avibactam, and Piperacillin/Tazobactam
Cited by: 8
Author(s): Weihua Huang, Joelle El Hamouche, Guiqing Wang, Melissa Smith, Changhong Yin, Abhay Dhand, Nevenka Dimitrova, John T. Fallon
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21030774

Transcriptome Analysis Reveals the Different Response to Toxic Stress in Rootstock Grafted and Non-Grafted Cucumber Seedlings
Cited by: 14
Author(s): Xuemei Xiao, Jian Lv, Jianming Xie, Feng Zhi, Ning Ma, Li Ju, Jiangnan Yu, Alejandro Calderón-Urrea
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21030967

The RNA-Binding Protein ATXN2 is Expressed during Megakaryopoiesis and May Control Timing of Gene Expression
Cited by: 7
Author(s): Marten Hansen, Sabrina Zeddies, Marjolein Meinders, Franca di Summa, Ewa Rollmann, Floris P.J. van Alphen, Arjan J. Hoogendijk, Kat Moore, Melanie Vanessa Halbach, Laura Gutiérrez, Maartje van den Biggelaar, Daphne C. Thijssen‐Timmer, Georg Auburger, Emile van den Akker, Marieke von Lindern
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-73521-2

Epigenetic regulation of gene expression improves Fusarium head blight resistance in durum wheat
Cited by: 16
Author(s): Jitendra Kumar, Krishan Mohan, Seyed Mostafa Pirseyedi, Elias M. Elias, Steven S. Xu, Ruth Dill‐Macky, Shahryar F. Kianian
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-74595-8

Expamers: a new technology to control T cell activation
Cited by: 15
Author(s): Mateusz Poltorak, Patricia Graef, Claudia Tschulik, Michaela Wagner, Vlad Cletiu, Stefan Dreher, Bojana Borjan, Simon P. Fraessle, Manuel Effenberger, Martin Turk, Dirk H. Busch, Juergen M. Plitzko, David Kugler, Seamus P. Ragan, Torben Schmidt, Christian Stemberger, Lothar Germeroth
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21030846

Transcriptomic Analyses of Camellia oleifera ‘Huaxin’ Leaf Reveal Candidate Genes Related to Long-Term Cold Stress
Cited by: 23
Author(s): Lingli Wu, Jianan Li, Ze Li, Fanhang Zhang, Xiaofeng Tan
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12862-021-01818-5

Adaptive evolution of Moniliophthora PR-1 proteins towards its pathogenic lifestyle
Cited by: 1
Author(s): Adrielle Ayumi de Vasconcelos, Juliana José, Paulo M. Tokimatu, Antônio Pedro Camargo, Paulo José Pereira Lima Teixeira, Daniela P. T. Thomazella, Paula Favoretti Vital do Prado, Gabriel Lorencini Fiorin, Juliana Leles Costa, Antônio Figueira, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira, Renata Moro Baroni
Software Mentions: 1
Published: over 5 years ago

10.1186/s12861-020-00219-z

Identification of vital candidate microRNA/mRNA pairs regulating ovule development using high-throughput sequencing in hazel
Cited by: 11
Author(s): Jianfeng Liu, Qizheng Luo, Xingzheng Zhang, Qiang Zhang, Yufei Cheng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-75453-3

A compound combination screening approach with potential to identify new treatment options for paediatric acute myeloid leukaemia
Cited by: 4
Author(s): Katrina M. Lappin, Lindsay Davis, Kyle B. Matchett, Yubin Ge, Ken Mills, Jaine K. Blayney
Software Mentions: 1
Published: about 6 years ago

10.1186/s12861-021-00240-w

Changes in the expression levels of elastic fibres in yak lungs at different growth stages
Cited by: 2
Author(s): Jingyi Li, Xiangqiong Meng, Lihan Wang, Hanry Yu, Honggang Yu, Qing Wei
Software Mentions: 1
Published: over 5 years ago

10.1186/s12906-019-2558-9

Antimicrobial characteristics of Berberine against prosthetic joint infection-related Staphylococcus aureus of different multi-locus sequence types
Cited by: 27
Author(s): Jiaqi Tan, Jin Wang, Chuang Yang, Chongzun Zhu, Geyong Guo, Jin Tang, Hao Shen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-75877-x

miRNA profiles of canine cutaneous mast cell tumours with early nodal metastasis and evaluation as potential biomarkers
Cited by: 5
Author(s): Valentina Zamarian, Roberta Ferrari, D. Stefanello, Fabrizio Ceciliani, Valeria Grieco, Giulietta Minozzi, Lavinia Elena Chiti, Maddalena Arigoni, Raffaele Calogero, Cristina Lecchi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-76041-1

Antigen-specific immunotherapy combined with a regenerative drug in the treatment of experimental type 1 diabetes
Cited by: 6
Author(s): Adrian Villalba, Silvia Rodríguez-Fernández, David Perna-Barrull, Rosa-Maria Ampudia, Laia Gomez-Muñoz, Irma Pujol‐Autonell, Eva Aguilera, Ruth M. Risueño, Mary Cano‐Sarabia, Daniel Maspoch, Federico Vázquez, Marta Vives-Pi
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21030946

Integrative Transcriptome and Proteome Analysis of the Tube Foot and Adhesive Secretions of the Sea Urchin Paracentrotus lividus
Cited by: 16
Author(s): Robert Pjeta, Herbert Lindner, Leopold Kremser, Willi Salvenmoser, Daniel Sobral, Peter Ladurner, Romana Santos
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-76175-2

Mucosal microbiota and gene expression are associated with long-term remission after discontinuation of adalimumab in ulcerative colitis
Cited by: 9
Author(s): Toshiharu Sakurai, Hiroki Nishiyama, Kazuko Sakai, Marco A. De Velasco, Tatsuo Nagai, Yoriaki Komeda, Hiroshi Kashida, Akiyoshi Okada, Isao Kawai, Kazuto Nishio, Hiroyuki Ogata, Masatoshi Kudo
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-76234-8

RNA seq analyses of chicken reveals biological pathways involved in acclimation into different geographical locations
Cited by: 7
Author(s): Himansu Kumar, Hyo-Jun Choo, Asankadyr U. Iskender, Krishnamoorthy Srikanth, Hana Kim, Asankadyr Zhunushov, Gul Won Jang, Youngjo Lim, Ki-Duk Song, Jong-Eun Park
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-018-4621-1

Comprehensive transcriptomic analysis of heat shock proteins in the molecular subtypes of human breast cancer
Cited by: 36
Author(s): Felipe Carlos Martín Zoppino, Martin E. Guerrero-Gimenez, Gisela N. Castro, Daniel R. Ciocca
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21031121

Comparative Transcriptome Analysis Provides Insights into the Polyunsaturated Fatty Acid Synthesis Regulation of Fat-1 Transgenic Sheep
Cited by: 2
Author(s): Rongsong Luo, Zhong Zheng, Chunrong Yang, Xiaoran Zhang, Cheng Liu, Guanghua Su, Chunling Bai, Guangpeng Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-021-08176-x

Immunological effect of irreversible electroporation on hepatocellular carcinoma
Cited by: 12
Author(s): Xiaoxia Guo, Fukuan Du, Qin Liu, Yan Guo, Qingbing Wang, Wei Huang, Zhongmin Wang, Xiaoyi Ding, Zhiyuan Wu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21041371

Deconvolution of RNA-Seq Analysis of Hyperbaric Oxygen-Treated Mice Lungs Reveals Mesenchymal Cell Subtype Changes
Cited by: 9
Author(s): Yuan Yuan, Yilu Zhou, Yali Li, Catherine M. Hill, Rob M. Ewing, Mark G. Jones, Donna E. Davies, Zheng‐Lin Jiang, Yihua Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-019-5571-y

The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue
Cited by: 53
Author(s): Caspar Bundgaard‐Nielsen, Ulrik Baandrup, Lars Peter Nielsen, Susanne Sørensen
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-020-6600-6

Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes
Cited by: 15
Author(s): Karel Kalecky, Rebecca Modisette, Samantha Pena, Young-Rae Cho, Joseph H. Taube
Software Mentions: 1
Published: over 6 years ago

10.1099/acmi.0.000121

Transcriptome profiling of Variovorax paradoxus EPS under different growth conditions reveals regulatory and structural novelty in biofilm formation
Cited by: 2
Author(s): Richard J. Fredendall, Jenny L. Stone, Michael J. Pehl, Paul M. Orwin
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-020-07343-w

ANGPTL4 overexpression inhibits tumor cell adhesion and migration and predicts favorable prognosis of triple-negative breast cancer
Cited by: 18
Author(s): Yuchen Cai, Hang Yang, Kefeng Wang, Tan-Huan Chen, Wenqi Jiang, Yanxia Shi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-77463-7

Nod2 protects mice from inflammation and obesity-dependent liver cancer
Cited by: 10
Author(s): Serdar A. Gurses, Sunil Banskar, Cody Stewart, Bill Trimoski, Roman Dziarski, Dipika Gupta
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-018-4440-4

Chronophin regulates active vitamin B6 levels and transcriptomic features of glioblastoma cell lines cultured under non-adherent, serum-free conditions
Cited by: 7
Author(s): Markus Schulze, Maria Hutterer, Anja Sabo, S Hoja, Julia Lorenz, Tanja Rothhammer-Hampl, Christel Herold‐Mende, Lucia Floßbach, Camelia Monoranu, Markus J. Riemenschneider
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-77674-y

Cannabidiol enhances cytotoxicity of anti-cancer drugs in human head and neck squamous cell carcinoma
Cited by: 40
Author(s): Yoon Young Go, Su Ra Kim, Do Yeon Kim, Soo-Cheon Chae, Jae‐Jun Song
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78191-8

Transcriptomic analysis of Procambarus clarkii affected by “Black May” disease
Cited by: 10
Author(s): Guoqing Shen, Xiao Zhang, Jie Gong, Yang Wang, Pengdan Huang, Shui Yu, Zenghong Xu, Huangxuan Shen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78502-z

Cell–cell fusion of mesenchymal cells with distinct differentiations triggers genomic and transcriptomic remodelling toward tumour aggressiveness
Cited by: 7
Author(s): Lucile Delespaul, Caroline Gélabert, Tom Lesluyes, Sophie Le Guellec, Gaëlle Pérot, Laura Leroy, Jessica Baud, Candice Merle, Lydia Lartigue, Frédéric Chibon
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12103221

A High Protein Calorie Restriction Diet Alters the Gut Microbiome in Obesity
Cited by: 32
Author(s): Tien S. Dong, Kayti Luu, Venu Lagishetty, Farzaneh Sedighian, Sung Oh Woo, Benjamin W. Dreskin, William Katzka, Candace Chang, Yi Zhou, Nerea Arias-Jayo, Julianne C. Yang, Aaron I. Ahdoot, Zhaoping Li, Joseph R. Pisegna, Jonathan P. Jacobs
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-017-3233-5

Aberrant expression of ALK and EZH2 in Merkel cell carcinoma
Cited by: 20
Author(s): Tuukka Veija, Virve Koljonen, Tom Böhling, Mia Kero, Sakari Knuutila, Virinder Sarhadi
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-021-07905-6

EML4-ALK induces cellular senescence in mortal normal human cells and promotes anchorage-independent growth in hTERT-transduced normal human cells
Cited by: 3
Author(s): Akihiko Miyanaga, Masaru Matsumoto, Jessica Beck, Izumi Horikawa, Takahiro Oike, Hirokazu Okayama, Hiromi Tanaka, Sandra Burkett, Ana I. Robles, Mohammed A. Khan, Delphine Lissa, Masahiro Seike, Akihiko Gemma, Hiroyuki Mano, Curtis C. Harris
Software Mentions: 1
Published: over 5 years ago

10.3390/jpm11090923

αβ-T Cells Engineered to Express γδ-T Cell Receptors Can Kill Neuroblastoma Organoids Independent of MHC-I Expression
Cited by: 4
Author(s): Josephine G M Strijker, Ronja Pscheid, Esther Drent, Jessica J. F. van der Hoek, Bianca Koopmans, Kimberley Ober, Sander R. van Hooff, Waleed M. Kholosy, Annelisa M. Cornel, Chris Coomans, Andrea Bisso, Marleen M. van Loenen, Jan J. Molenaar, Judith Wienke
Software Mentions: 1
Published: about 5 years ago

10.1186/s12915-020-00925-x

Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats
Cited by: 29
Author(s): Octavio M. Palacios-Gimenez, Julia Koelman, Marc Palmada-Flores, Tessa M. Bradford, Karl K. Jones, Steven J. Cooper, Takeshi Kawakami, Alexander Suh
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm11090827

PTGDR2 Expression in Peripheral Blood as a Potential Biomarker in Adult Patients with Asthma
Cited by: 5
Author(s): Asunción Garcı́a-Sánchez, Miguel Estravís, Marı́a Jesús Martı́n, Jacqueline Pérez‐Pazos, Cristina Martín‐García, María Gil-Melcón, Jacinto Ramos‐González, Ibon Eguíluz-Gracia, Juan Carlos Triviño, María Isidoro‐García, Ignacio Dávila, Catalina Sanz
Software Mentions: 1
Published: about 5 years ago

10.1080/21623945.2020.1859789

Mouse Embryonic Fibroblast Adipogenic Potential: A Comprehensive Transcriptome Analysis
Cited by: 6
Author(s): Mohamed Al-Sayegh, Hamad Ali, Mohammad H. Jamal, Mei ElGindi, Tina Chanyong, Khulood Al-Awadi, Mohamed Abu‐Farha
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40478-020-00946-1

Epigenomics and transcriptomics analyses of multiple system atrophy brain tissue supports a role for inflammatory processes in disease pathogenesis
Cited by: 4
Author(s): Conceição Bettencourt, Ignazio S. Piras, Sandrine C. Foti, Joshua S. Talboom, Yasuo Miki, Tammaryn Lashley, R. Balázs, Emmanuelle Viré, Thomas T. Warner, Matt Huentelman, Janice L. Holton
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12123701

Understanding the Heterogeneity of Obesity and the Relationship to the Brain-Gut Axis
Cited by: 6
Author(s): Tony Hung, Tien S. Dong, Zixi Chen, David Elashoff, Janet S. Sinsheimer, Jonathan P. Jacobs, Venu Lagishetty, Priten Vora, Jean Stains, Emeran A. Mayer, Abha R. Gupta
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13287-021-02419-1

High-efficiency c-Myc-mediated induction of functional hepatoblasts from the human umbilical cord mesenchymal stem cells
Cited by: 3
Author(s): Jie Deng, Kai Luo, Pengchao Xu, Qingyuan Jiang, Yuan Wang, Yao Yuxia, Xiaolei Chen, Fuyi Cheng, Dan Xie, Hongxin Deng
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-021-02486-4

Bone marrow mesenchymal stem cells derived from juvenile macaques reversed ovarian ageing in elderly macaques
Cited by: 7
Author(s): Chuan Tian, Jie He, Yuanyuan An, Zailing Yang, Donghai Yan, Hang Pan, Guanke Lv, Ye Li, Yanying Wang, Yu-Kun Yang, Gaohong Zhu, Zhisong He, Xiaoyan Zhu, Xinghua Pan
Software Mentions: 1
Published: about 5 years ago

10.1186/s13287-021-02560-x

Human Wharton's jelly-derived mesenchymal stem cells alleviate concanavalin A-induced fulminant hepatitis by repressing NF-κB signaling and glycolysis
Cited by: 8
Author(s): Longfa Pan, Chang Liu, Qiuli Liu, Yanli Li, Cong Du, Xinmei Kang, Shuai Dong, Zhuowei Zhou, Huaxin Chen, Xiaowei Liang, Jiajie Chu, Yan Xu, Qi Zhang
Software Mentions: 1
Published: about 5 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

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Papers Mentioning DESeq2 9,583