bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1186/s13068-021-02013-w

Oxidative stress tolerance contributes to heterologous protein production in Pichia pastoris
Cited by: 9
Author(s): Nai-Xin Lin, Rui He, Yan Xu, Xiao Yu
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.680081

Prediction of Srebp-1 as a Key Target of Qing Gan San Against MAFLD in Rats via RNA-Sequencing Profile Analysis
Cited by: 5
Author(s): Bendong Yang, Jingyue Sun, Shufei Liang, Peixuan Wu, Rui Lv, Ying He, Deqi Li, Wenlong Sun, Xinhua Song
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.614024

Paeoniflorin and Hydroxysafflor Yellow A in Xuebijing Injection Attenuate Sepsis-Induced Cardiac Dysfunction and Inhibit Proinflammatory Cytokine Production
Cited by: 16
Author(s): Xin-Tong Wang, Zhen Peng, Yingying An, Tao Shang, Guangxu Xiao, Shuang He, Xi Chen, Han Zhang, Yuefei Wang, Tao Wang, Junhua Zhang, Xiumei Gao, Yan Zhu, Yi Feng
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.714556

MicroRNA-221-3p Suppresses the Microglia Activation and Seizures by Inhibiting of HIF-1α in Valproic Acid-Resistant Epilepsy
Cited by: 9
Author(s): Meng Fu, Yiqing Zhu, Junqi Zhang, Wei Wu, Yunxia Sun, Xuemei Zhang, Jie Tao, Zhiping Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.01146

7-Hydroxycoumarin Attenuates Colistin-Induced Kidney Injury in Mice Through the Decreased Level of Histone Deacetylase 1 and the Activation of Nrf2 Signaling Pathway
Cited by: 14
Author(s): Jian Wang, Muhammad Ishfaq, Qianqian Fan, Chunli Chen, Jichang Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.00199

Real-Ambient Particulate Matter Exposure-Induced Cardiotoxicity in C57/B6 Mice
Cited by: 23
Author(s): Lianhua Cui, Limei Shi, Daochuan Li, Xiaobo Li, Xuan Su, Liping Chen, Qixiao Jiang, Menghui Jiang, Jing Luo, Andong Ji, Chen Chen, Jianxun Wang, Jinglong Tang, Jingbo Pi, Rui Chen, Wen Chen, Rong Zhang, Yuxin Zheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.570450

Transcriptome Profiling and Cytological Assessments for Identifying Regulatory Pathways Associated With Diorcinol N-Induced Autophagy in A3 Cells
Cited by: 6
Author(s): Xiaolong Yuan, Xiuqi Li, Kuo Xu, Xiaodong Hou, Zhongfeng Zhang, Xue Lü, Xinmin Liu, Peng Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.635034

Reduction of Matrix Metallopeptidase 13 and Promotion of Chondrogenesis by Zeel T in Primary Human Osteoarthritic Chondrocytes
Cited by: 4
Author(s): Christelle Sanchez, Kathrin Hemmer, Natascha Krömmelbein, Bernd Seilheimer, Jean-Émile Dubuc, Christophe Antoine, Yves Henrotin
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.673432

Oxymatrine Synergistically Enhances Doxorubicin Anticancer Effects in Colorectal Cancer
Cited by: 8
Author(s): Di Pan, Wen Zhang, Nenling Zhang, Yini Xu, Yi Chen, Jianqing Peng, Yan Chen, Yanyan Zhang, Xiangchun Shen
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.01302

Ketamine and Active Ketamine Metabolites Regulate STAT3 and the Type I Interferon Pathway in Human Microglia: Molecular Mechanisms Linked to the Antidepressant Effects of Ketamine
Cited by: 26
Author(s): Ming‐Fen Ho, Cheng Zhang, Lingxin Zhang, Hu Li, Richard M. Weinshilboum
Software Mentions: 1
Published: about 7 years ago

10.1093/cercor/bhy058

Altered Neocortical Gene Expression, Brain Overgrowth and Functional Over-Connectivity in Chd8 Haploinsufficient Mice
Cited by: 90
Author(s): Philipp Suetterlin, Shaun Hurley, Conor Mohan, Kimberley L. H. Riegman, Maria Pia Pagani, Angela Caruso, Jacob Ellegood, Alberto Galbusera, Iván Crespo-Enríquez, Caterina Michetti, Yohan Yee, Robert Ellingford, Olivier Brock, Alessio Delogu, Philippa Francis‐West, Jason P. Lerch, María Luisa Scattoni, Alessandro Gozzi, Cathy Fernandes, M. Albert Basson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-69729-x

Integrated transcriptomic and metabolomic analyses reveal the effects of callose deposition and multihormone signal transduction pathways on the tea plant-Colletotrichum camelliae interaction
Cited by: 12
Author(s): Qinhua Lu, Yuchun Wang, Fei Xiong, Xinyuan Hao, Xinzhong Zhang, Nana Li, Lu Wang, Jianming Zeng, Yajun Yang, Xinchao Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-019-1534-4

Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)
Cited by: 5
Author(s): Shumeng Zhang, Fengli Sun, Weiwei Wang, Yang Guoyu, Chao Zhang, Yongfeng Wang, Shudong Liu, Yajun Xi
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-4570-8

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
Cited by: 35
Author(s): Kai Kristoffer Lie, Ole K. Tørresen, Monica Hongrø Solbakken, Ivar Rønnestad, Ave Tooming‐Klunderud, Alexander Johan Nederbragt, Sissel Jentoft, Øystein Sæle
Software Mentions: 1
Published: over 8 years ago

10.3389/fphar.2021.649267

Chemoresponse of de novo Acute Myeloid Leukemia to “7+3” Induction can Be Predicted by c-Myc-facilitated Cytogenetics
Cited by: 2
Author(s): Tzu‐Hung Hsiao, Ren‐Ching Wang, Tsai‐Jung Lu, Chien-Hung Shih, Yangfeng Su, Jia-Rong Tsai, Pei‐Pei Jhan, Cai-Sian Lia, Han‐Ni Chuang, Kuang-Hsi Chang, Chieh‐Lin Jerry Teng
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.641917

Luteolin Alleviates Methamphetamine-Induced Hepatotoxicity by Suppressing the p53 Pathway-Mediated Apoptosis, Autophagy, and Inflammation in Rats
Cited by: 10
Author(s): Kaikai Zhang, Hui Wang, Dong Qu, Lijian Chen, Libin Wang, Jiahao Li, Jiali Liu, Lingling Xu, Jamie Still Yoshida, Jian Xu, Xing Xie, Dong-Ri Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-019-1510-z

Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate
Cited by: 23
Author(s): Kyle R. Pomraning, James R. Collett, Joonhoon Kim, Ellen Panisko, David E. Culley, Ziyu Dai, Shuang Deng, Beth A. Hofstad, Mark Butcher, Jon Magnuson
Software Mentions: 1
Published: over 7 years ago

10.3390/ani10081326

Preliminary Identification of Candidate Genes Related to Survival of Gynogenetic Rainbow Trout (Oncorhynchus mykiss) Based on Comparative Transcriptome Analysis
Cited by: 6
Author(s): Konrad Ocalewicz, Artur Gurgul, Marcin Polonis, Stefan Dobosz
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-018-0623-9

Salvianolic acid B inhibits glycolysis in oral squamous cell carcinoma via targeting PI3K/AKT/HIF-1α signaling pathway
Cited by: 55
Author(s): Jie Wei, Jun Wu, Wen Xu, Hong Nie, Ruiqing Zhou, Rui Wang, Yang Liu, Guoyao Tang, Jianyong Wu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3897-x

Comparative muscle transcriptome associated with carcass traits of Nellore cattle
Cited by: 40
Author(s): Bárbara Silva-Vignato, Luiz Lehmann Coutinho, Mirele Daiana Poleti, Luciana Correia de Almeida Regitano, Júlio César de Carvalho Balieiro
Software Mentions: 1
Published: over 9 years ago

10.1186/s13068-021-02034-5

Monitoring of seven industrial anaerobic digesters supplied with biochar
Cited by: 13
Author(s): Kerstin Heitkamp, Adriel Latorre‐Pérez, Sven Nefigmann, Helena Gimeno-Valero, Cristina Vilanova, Efri Jahmad, Christian Abendroth
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2019.00366

Altered Immune Landscape and Disrupted Coral-Symbiodinium Symbiosis in the Scleractinian Coral Pocillopora damicornis by Vibrio coralliilyticus Challenge
Cited by: 19
Author(s): Zhi Zhou, Shilei Zhao, Jia Tang, Zhaoqun Liu, Yibo Wu, Wang Yan, Senjie Lin
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2020.543962

Mitochondrial DNA Affects the Expression of Nuclear Genes Involved in Immune and Stress Responses in a Breast Cancer Model
Cited by: 5
Author(s): Carole Grasso, David Eccles, Štěpána Boukalová, Marie-Sophie Fabre, Rebecca H. Dawson, Jiřı́ Neužil, Patries M. Herst, Michael V. Berridge
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2020.578939

Transcriptomic Profiling of Various Developmental Stages of Aphis Aurantii to Provide a Genetic Resource for Gene Expression and SSR Analysis
Cited by: 3
Author(s): Feng Hong, Si-Hua Mo, Ying‐Hong Liu, Dong Wei
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-021-03940-0

Operative ubiquitin-specific protease 22 deubiquitination confers a more invasive phenotype to cholangiocarcinoma
Cited by: 5
Author(s): Yu Tian, Bo Tang, Cheng‐Ye Wang, Yan Wang, Jiakai Mao, Yifan Yao, Zhenming Gao, Rui Ling, Mingliang Ye, Shijie Cai, Liming Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4918-0

Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection
Cited by: 17
Author(s): Guillaume Carissimo, Adrien Pain, Eugeni Belda, Kenneth D. Vernick
Software Mentions: 1
Published: over 8 years ago

10.3390/jof7070525

Micafungin-Induced Cell Wall Damage Stimulates Morphological Changes Consistent with Microcycle Conidiation in Aspergillus nidulans
Cited by: 5
Author(s): Samantha Reese, Cynthia Chelius, Wayne R. Riekhof, Mark R. Marten, Steven D. Harris
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-017-0196-z

Oncogenic HSP60 regulates mitochondrial oxidative phosphorylation to support Erk1/2 activation during pancreatic cancer cell growth
Cited by: 74
Author(s): Chao Zhou, Hongwei Sun, Zheng Chen, Jing Gao, Qingzi Fu, Nianqi Hu, Xiaoli Shao, Yingying Zhou, Jingting Xiong, Kun Nie, Huaibin Zhou, Lijun Shen, Hezhi Fang, Jianxin Lyu
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21207552

Mimulus sRNAs Are Wound Responsive and Associated with Transgenerationally Plastic Genes but Rarely Both
Cited by: 4
Author(s): Jack M. Colicchio, John K. Kelly, Lena C. Hileman
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0244065

A strategic expression method of miR-29b and its anti-fibrotic effect based on RNA-sequencing analysis
Cited by: 7
Author(s): Xiaoming Fan, Yingnyu Gao, Xiaolu Zhang, Haroon Y. Lughmani, David J. Kennedy, Steven T. Haller, Sandrine V. Pierre, Joseph I. Shapiro, Jiang Tian
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2021.679919

Proerythroblast Cells of Diamond-Blackfan Anemia Patients With RPS19 and CECR1 Mutations Have Similar Transcriptomic Signature
Cited by: 3
Author(s): Beren Karaosmanoğlu, M. Alper Kursunel, Duygu Uçkan Çetinkaya, Fatma Gümrük, Güneş Esendağlı, Şule Ünal, Ekim Z. Taşkıran
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0213299

High-fat diet impacts more changes in beta-cell compared to alpha-cell transcriptome
Cited by: 13
Author(s): Rodolphe Dusaulcy, Sandra Handgraaf, Florian Visentin, Cédric Howald, Emmanouil T. Dermitzakis, Jacques Philippe, Yvan Gosmain
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-018-1261-y

Sanshool improves UVB-induced skin photodamage by targeting JAK2/STAT3-dependent autophagy
Cited by: 49
Author(s): Dan Hao, Xiang Wen, Lian Liu, Lian Wang, Xian‐Li Zhou, Yanmei Li, Xin Zeng, Gu He, Xian Jiang
Software Mentions: 1
Published: almost 8 years ago

10.1093/cercor/bhw394

Neurexins 1–3 Each Have a Distinct Pattern of Expression in the Early Developing Human Cerebral Cortex
Cited by: 22
Author(s): Lauren F. Harkin, Susan Lindsay, Yaobo Xu, Ayman Alzu’bi, Alexandra Ferrara, Emily A Gullon, Owen G James, Gavin J. Clowry
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-70534-9

Discovery of small molecules that normalize the transcriptome and enhance cysteine cathepsin activity in progranulin-deficient microglia
Cited by: 11
Author(s): Maria Telpoukhovskaia, Kai Li, Faten A. Sayed, Jon Iker Etchegaray, Min Xie, Lihong Zhan, Yaqiao Li, Yungui Zhou, David Le, Ben A. Bahr, Matthew Bogyo, Sheng Ding, Li Gan
Software Mentions: 1
Published: over 6 years ago

10.1002/bit.27607

High‐resolution three‐dimensional chromatin profiling of the Chinese hamster ovary cell genome
Cited by: 4
Author(s): Steve Bevan, Stefan Schoenfelder, Robert J. Young, Lin Zhang, Simon Andrews, Peter Fraser, Peter M. O’Callaghan
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0146555

The Effect of Root Exudate 7,4′-Dihydroxyflavone and Naringenin on Soil Bacterial Community Structure
Cited by: 51
Author(s): Márton Szoboszlay, A.C. White-Monsant, Luke A. Moe
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-018-4471-x

Transcriptome analysis reveals mechanisms of geroprotective effects of fucoxanthin in Drosophila
Cited by: 22
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Nadezhda Zemskaya, А. С. Белый, Eugenia Dobrovolskaya, Anna Patova, Zulfiya G. Guvatova, E. N. Lukyanova, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 1
Published: almost 9 years ago

10.1002/bit.27274

Overexpression of transcription factor Foxa1 and target genes remediate therapeutic protein production bottlenecks in Chinese hamster ovary cells
Cited by: 25
Author(s): Audrey Berger, Valérie Le Fourn, Jacqueline Masternak, Alexandre Regamey, Iris Bodenmann, Pierre‐Alain Girod, Nicolas Mermod
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0153351

Characterization of the Probiotic Yeast Saccharomyces boulardii in the Healthy Mucosal Immune System
Cited by: 60
Author(s): Lauren E. Hudson, Courtney D. McDermott, Taryn P. Stewart, William Henry Hudson, Daniel Ríos, Milo B. Fasken, Anita H. Corbett, Tracey J. Lamb
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-70882-6

Molecular insights into biochar-mediated plant growth promotion and systemic resistance in tomato against Fusarium crown and root rot disease
Cited by: 55
Author(s): Amit K. Jaiswal, Noam Alkan, Y. Elad, Noa Sela, Amit Mary Philosoph, Ellen R. Graber, Omer Frenkel
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20200187

KRT84 is a potential tumor suppressor and good prognosis signature of oral squamous cell carcinoma
Cited by: 2
Author(s): Yi Liu, Ronghua Li, Gang Ren
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2021.640898

Dietary Trivalent Chromium Exposure Up-Regulates Lipid Metabolism in Coral Trout: The Evidence From Transcriptome Analysis
Cited by: 11
Author(s): Wei Lu, Yu Liu, Hengzhen Ye, Juan Xiao, Christer Högstrand, Iain D. Green, Zhiqiang Guo, Dong Han
Software Mentions: 1
Published: over 5 years ago

10.1186/s12915-020-0764-z

DDX39B interacts with the pattern recognition receptor pathway to inhibit NF-κB and sensitize to alkylating chemotherapy
Cited by: 14
Author(s): Szymon J. Szymura, Giovanna M. Bernal, Longtao Wu, Zhongqin Zhang, Clayton D. Crawley, David J. Voce, Paige-Ashley Campbell, Diana E. Ranoa, Ralph R. Weichselbaum, Bakhtiar Yamini
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2021.683056

Integrated Transcriptomic and Proteomic Analysis Reveals Up-Regulation of Apoptosis and Small Heat Shock Proteins in Lens of Rats Under Low Temperature
Cited by: 4
Author(s): Jie Zhou, Jing Wu, Shaokai Zheng, Xiangjun Chen, Daizhan Zhou, Xingchao Shentu
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20190540

Regulatory networks of circRNAs related to transcription factors in <i>Populus euphratica</i> Oliv. heteromorphic leaves
Cited by: 7
Author(s): Lianghong Bao, Shaowei Qin, Cai-Lin Li, Zhongzhong Guo, Lei Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-70865-7

Hypoxic gene expression in chronic hepatitis B virus infected patients is not observed in state-of-the-art in vitro and mouse infection models
Cited by: 11
Author(s): Peter Jianrui Liu, James Michael Harris, Emanuele Marchi, Valentina D’Arienzo, Thomas Michler, Peter AC Wing, Andrea Magrì, Ana Maria Ortega-Prieto, Maarten van de Klundert, Jochen M. Wettengel, David Durantel, Marcus Dorner, Paul Klenerman, Ulrike Protzer, Efstathios S. Giotis, Jane A. McKeating
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21207656

Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer
Cited by: 8
Author(s): Tatiana Vinasco-Sandoval, Fabiano Cordeiro Moreira, Amanda Ferreira Vidal, Pablo Pinto, André M. Ribeiro-dos-Santos, Rebecca L S Cruz, Gleyce Fonseca Cabral, Ana Karyssa Mendes Anaissi, Kátia de Paiva Lopes, André M. Ribeiro-dos-Santos, Sâmia Demachki, Paulo Pimentel de Assumpção, Sidney Emanuel Batista dos Santos
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2021.624037

Transcriptomic Identification of Draxin-Responsive Targets During Cranial Neural Crest EMT
Cited by: 6
Author(s): Erica J. Hutchins, Michael L. Piacentino, Marianne E. Bronner
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-70190-z

Vitamin D ameliorates adipose browning in chronic kidney disease cachexia
Cited by: 16
Author(s): Wai W. Cheung, Wei Ding, Hal M. Hoffman, Zhen Wang, Hao Sheng, Ronghao Zheng, Alex Gonzalez, Junpeng Zhan, Ping Zhou, Shiping Li, Mary C. Esparza, Richard L. Lieber, Robert H. Mak
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2020.00885

A Comparative Study on Growth and Metabolism of Eriocheir sinensis Juveniles Under Chronically Low and High pH Stress
Cited by: 7
Author(s): Xiaodan Wang, Zhaohui Huang, Chunling Wang, Qi Cui, Zhenxin Gu, Erchao Li, Jianguang Qin, Liqiao Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2019.00699

HIF-1α Stabilization Increases miR-210 Eliciting First Trimester Extravillous Trophoblast Mitochondrial Dysfunction
Cited by: 27
Author(s): Lauren Anton, Ann DeVine, Erzsébet Polyák, Anthony O. Olarerin-George, Amy G. Brown, Marni J. Falk, Michal A. Elovitz
Software Mentions: 1
Published: over 7 years ago

10.3390/ani10040628

Comparative Transcriptome Analysis of Gill Tissue in Response to Hypoxia in Silver Sillago (Sillago sihama)
Cited by: 24
Author(s): Wanida Saetan, Changxu Tian, Jiawang Yu, Xinghua Lin, Fei-Xiang He, Yang Huang, Hongjuan Shi, Yulei Zhang, Guangli Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2020.630037

Transcriptomic and Metabolomic Analyses of Diaphorina citri Kuwayama Infected and Non-infected With Candidatus Liberibacter Asiaticus
Cited by: 6
Author(s): Kai Liu, Jiawei He, Ziying Guan, Mingzhao Zhong, Rui Pang, Qunxin Han
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.588082

Transcriptomic Analyses Reveal the Protective Immune Regulation of Conjugated Linoleic Acids in Sheep Ruminal Epithelial Cells
Cited by: 10
Author(s): Chunlei Yang, Wei Lan, Shijie Ye, Binna Zhu, Zhengwei Fu
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20191028

miR-484 is associated with disease recurrence and promotes migration in prostate cancer
Cited by: 10
Author(s): Daniel Lee, Wei Tang, Tiffany H. Dorsey, Stefan Ambs
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-71131-6

Improved locomotor recovery after contusive spinal cord injury in Bmal1−/− mice is associated with protection of the blood spinal cord barrier
Cited by: 17
Author(s): Łukasz P. Słomnicki, Scott A. Myers, Sujata Saraswat Ohri, Molly V. Parsh, Kariena R. Andres, Julia H. Chariker, Eric C. Rouchka, Michał Hetman
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20194041

RNA-sequencing and bioinformatics analysis of long noncoding RNAs and mRNAs in the asthenozoospermia
Cited by: 14
Author(s): Hui Lü, Dongchuan Xu, Ping Wang, Wenye Sun, Xinhuai Xue, Yuxin Hu, Chunli Xie, Yanlin Ma
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2021.648056

Gestational Low Protein Diet Modulation on miRNA Transcriptome and Its Target During Fetal and Breastfeeding Nephrogenesis
Cited by: 2
Author(s): Letícia de Barros Sene, Gabriela Leme Lamana, André Schwambach Vieira, Wellerson Rodrigo Scarano, José Antônio Rocha Gontijo, Patrícia Aline Bôer
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21207596

Tissue-Specific Transcriptome Analysis Reveals Candidate Transcripts Associated with the Process of Programmed B Chromosome Elimination in Aegilops speltoides
Cited by: 5
Author(s): Anastassia Boudichevskaia, Alevtina Ruban, Johannes Thiel, Anne Fiebig
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2020.565307

Identification of Potentially Relevant Genes for Excessive Exercise-Induced Pathological Cardiac Hypertrophy in Zebrafish
Cited by: 6
Author(s): Zuoqiong Zhou, Lan Zheng, Cui Tang, Zhanglin Chen, Runkang Zhu, Xiyang Peng, Xiushan Wu, Ping Zhu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2019.01568

Comparative Transcriptome Analysis of the Heat Stress Response in Monochamus alternatus Hope (Coleoptera: Cerambycidae)
Cited by: 27
Author(s): Hui Li, Xinyi Zhao, Heng Qiao, Xuanyu He, Jiajin Tan, Dejun Hao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-018-1080-1

Activation of the interferon type I response rather than autophagy contributes to myogenesis inhibition in congenital DM1 myoblasts
Cited by: 13
Author(s): Milena Rizzo, Pascale Beffy, R. Del Carratore, Alessandra Falleni, Virginia Pretini, Romina D’Aurizio, Annalisa Botta, Monica Evangelista, Andrea Stoccoro, Fabio Coppedè, Denis Furling, Marcella Simili
Software Mentions: 1
Published: about 8 years ago

10.3389/fphys.2021.660402

Acute Effects on the Human Peripheral Blood Transcriptome of Decompression Sickness Secondary to Scuba Diving
Cited by: 8
Author(s): Kurt Magri, Ingrid Eftedal, Vanessa Petroni Magri, Lyubisa Matity, Charles Paul Azzopardi, Stephen Muscat, Nikolai Paul Pace
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21218119

Expression of EMT-Related Genes in Hybrid E/M Colorectal Cancer Cells Determines Fibroblast Activation and Collagen Remodeling
Cited by: 13
Author(s): Irina Druzhkova, Marina V. Shirmanova, Nadezhda Ignatova, Varvara V. Dudenkova, Maria M. Lukina, Elena V. Zagaynova, Dina Safina, Sergey V. Kostrov, D. A. Didych, A. I. Kuzmich, Г. В. Шаронов, Olga Rakitina, И. В. Алексеенко, Е. Д. Свердлов
Software Mentions: 1
Published: about 6 years ago

10.3390/biom11020281

Serum Acylcarnitines Associated with High Short-Term Mortality in Patients with Alcoholic Hepatitis
Cited by: 6
Author(s): Bei Gao, Josepmaría Argemi, R. Bataller, Bernd Schnabl
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2017.02056

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)—A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes
Cited by: 30
Author(s): Karolina Chwiałkowska, Urszula Korotko, Joanna Kosińska, Iwona Szarejko, Mirosław Kwaśniewski
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2021.664792

Alternative Oxidase Inhibition Impairs Tobacco Root Development and Root Hair Formation
Cited by: 3
Author(s): Yang Liu, Lulu Yu, Peng Ye, Geng Xinxin, Fei Xu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-71636-0

Transcriptional analysis of cleft palate in TGFβ3 mutant mice
Cited by: 4
Author(s): Jingpeng Liu, Sree Krishna Chanumolu, Kevin White, Mustafa Albahrani, Hasan H. Otu, Ali Nawshad
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2019.01341

Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus
Cited by: 6
Author(s): Rubina Jibran, Jessica Spencer, Gina E. Fernandez, Amparo Monfort, Mourad Mnejja, Helge Dzierzon, Jibran Tahir, Kevin Davies, David Chagné, Toshi Foster
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2020.598483

Variation Between Three Eragrostis tef Accessions in Defense Responses to Rhopalosiphum padi Aphid Infestation
Cited by: 6
Author(s): Nathan M Gyan, Beery Yaakov, Nati Weinblum, Anuradha Singh, Alon Cna’ani, Shiran Ben‐Zeev, Yehoshua Saranga, Vered Tzin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.2004328

The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes
Cited by: 56
Author(s): Gerry Tonkin‐Hill, Leily Trianty, Rintis Noviyanti, Hanh Thi Ngoc Nguyen, Boni F. Sebayang, Daniel A. Lampah, Jutta Marfurt, Simon A. Cobbold, Janavi S. Rambhatla, Malcolm J. McConville, Stephen J. Rogerson, Graham V. Brown, Karen P. Day, Ric N. Price, Nicholas M. Anstey, Anthony T. Papenfuss, Michael Duffy
Software Mentions: 1
Published: over 8 years ago

10.3390/ijerph17155466

The Impact of the Deepwater Horizon Oil Spill upon Lung Health—Mouse Model-Based RNA-Seq Analyses
Cited by: 4
Author(s): Yaozhong Liu, Charles A. Miller, Yan Zhuang, Sudurika Mukhopadhyay, Shigeki Saito, Edward B. Overton, Gilbert F. Morris
Software Mentions: 1
Published: over 6 years ago

10.3390/biom11050764

Lack of Conserved miRNA Deregulation in HPV-Induced Squamous Cell Carcinomas
Cited by: 5
Author(s): Jaroslav Nunvář, Lucie Pagáčová, Zuzana Vojtěchová, Nayara Azevedo, Jana Šmahelová, Martina Saláková, Ruth Tachezy
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2019.01574

Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici
Cited by: 20
Author(s): Sowmya Ramachandran, Nicholas A. Mueth, Ping Zheng, Scot H. Hulbert
Software Mentions: 1
Published: almost 7 years ago

10.3390/biom11040525

Sphingosine Promotes Embryo Biomass in Upland Cotton: A Biochemical and Transcriptomic Analysis
Cited by: 3
Author(s): Li Wang, Xiaodong Suo, Yujie Liu, Chen Liu, Ming Luo
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00776

Identification of QTLs Containing Resistance Genes for Sclerotinia Stem Rot in Brassica napus Using Comparative Transcriptomic Studies
Cited by: 31
Author(s): Muhammad Uzair Qasim, Qing Zhao, Muhammad Shahid, Rana Abdul Samad, Sunny Ahmar, Jian Wu, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-71910-1

Hemoglobin stimulates vigorous growth of Streptococcus pneumoniae and shapes the pathogen's global transcriptome
Cited by: 14
Author(s): Fahmina Akhter, Edroyal Womack, Jorge E. Vidal, Yoann Le Breton, Kevin S. McIver, Shrikant Pawar, Zehava Eichenbaum
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.01188

Plant Immune System Activation Upon Citrus Leprosis Virus C Infection Is Mimicked by the Ectopic Expression of the P61 Viral Protein
Cited by: 13
Author(s): Gabriella Dias Arena, Pedro Luis Ramos-González, Bryce W. Falk, Clare L. Casteel, Juliana Freitas-Astúa, Marcos Antônio Machado
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/8460355

Transcriptional Profiling of Exosomes Derived from Staphylococcus aureus-Infected Bovine Mammary Epithelial Cell Line MAC-T by RNA-Seq Analysis
Cited by: 22
Author(s): Yu Chen, Hongyuan Jing, Miaoyu Chen, Wan Liang, Jing Yang, Ganzhen Deng, Mengyao Guo
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.660226

Exogenous Gene Expression and Insect Resistance in Dual Bt Toxin Populus × euramericana ‘Neva’ Transgenic Plants
Cited by: 11
Author(s): Yachao Ren, Xinglu Zhou, Yan Dong, Jun Zhang, Jinmao Wang, Minsheng Yang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-72290-2

Attenuating hypoxia driven malignant behavior in glioblastoma with a novel hypoxia-inducible factor 2 alpha inhibitor
Cited by: 16
Author(s): Jaclyn J. Renfrow, M. Soike, James L. West, Shakti Ramkissoon, Linda J. Metheny-Barlow, Ryan T. Mott, Carol Kittel, Ralph B. D’Agostino, Stephen B. Tatter, Adrian W. Laxton, Mark B. Frenkel, Gregory A. Hawkins, Denise Herpai, Stephanie Sanders, Jann N. Sarkaria, Glenn J. Lesser, Waldemar Debinski, Roy Strowd
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2017.01064

Unraveling the Transcriptional Basis of Temperature-Dependent Pinoxaden Resistance in Brachypodium hybridum
Cited by: 16
Author(s): Maor Matzrafi, Lidor Shaar-Moshe, Baruch Rubin, Zvi Peleg
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.629089

Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.)
Cited by: 14
Author(s): Martina Kintlová, Jan Vrána, Roman Hobza, Nicolas Blavet, Vojtěch Hudzieczek
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.28046

Ubiquitination-dependent control of sexual differentiation in fission yeast
Cited by: 15
Author(s): Fabrizio Simonetti, Tito Candelli, Sébastien Léon, Domenico Libri, Mathieu Rougemaille
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2021.632788

Association Mapping and Transcriptome Analysis Reveal the Genetic Architecture of Maize Kernel Size
Cited by: 3
Author(s): Jian Ma, Lifeng Wang, Yongsong Cao, Hao Wang, Huiyong Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.00370

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii
Cited by: 22
Author(s): Marina Puigvert, Rodrigo Guarischi-Sousa, Paola Zuluaga, Núria S. Coll, Alberto P. Macho, João Carlos Setúbal, Marc Valls
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.00672

Analysis of Dynamic Global Transcriptional Atlas Reveals Common Regulatory Networks of Hormones and Photosynthesis Across Nicotiana Varieties in Response to Long-Term Drought
Cited by: 13
Author(s): Jing Wang, Shihua Zhang, Yunpeng Fu, Tiantian He, Xuewen Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-2384-0

Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells
Cited by: 30
Author(s): Alexandra Popa, Kévin Lebrigand, Pascal Barbry, Rainer Waldmann
Software Mentions: 1
Published: almost 11 years ago

10.3390/biom10091296

Autophagy Inhibits Grass Carp Reovirus (GCRV) Replication and Protects Ctenopharyngodon idella Kidney (CIK) Cells from Excessive Inflammatory Responses after GCRV Infection
Cited by: 18
Author(s): Pengfei Chu, Libo He, Rong Huang, Lanjie Liao, Yongming Li, Zhu Zhang, Wei Hu, Yaping Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/biom11010021

Transcriptomic Analysis of Naïve Human Embryonic Stem Cells Cultured in Three-Dimensional PEG Scaffolds
Cited by: 4
Author(s): Christina McKee, Christina Brown, Shreeya Bakshi, Keegan Walker, Chhabi K. Govind, G. Rasul Chaudhry
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.00715

Transcriptome Profiling of Buffalograss Challenged with the Leaf Spot Pathogen Curvularia inaequalis
Cited by: 7
Author(s): Bimal S. Amaradasa, Keenan Amundsen
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-72389-6

Correlated chromosomal periodicities according to the growth rate and gene expression
Cited by: 6
Author(s): Liu Liu, Masaomi Kurokawa, Motoki Nagai, Shigeto Seno, Bei‐Wen Ying
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0255672

Clinical impact of serum exosomal microRNA in liver fibrosis
Cited by: 11
Author(s): Young Woon Chang, Jae‐A Han, Suk Min Kang, Soung Won Jeong, Tom Ryu, Han Seul Park, Jeong‐Ju Yoo, Sae Hwan Lee, Sang Gyune Kim, Young Seok Kim, Hong Soo Kim, So Young Jin, Seongho Ryu, Jae Young Jang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-020-6747-1

Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus
Cited by: 29
Author(s): Mengdi Li, Ruihua Wang, Xiaoming Wu, Jianbo Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-03354-4

KDM6B is an androgen regulated gene and plays oncogenic roles by demethylating H3K27me3 at cyclin D1 promoter in prostate cancer
Cited by: 28
Author(s): Zhi Cao, Xiaolei Shi, Feng Tian, Yu Fang, Jason Wu, Stefan Mrđenović, Xinwen Nian, Jin Ji, Huan Xu, Kong Chen, Yisheng Xu, Xi Chen, Yuhua Huang, Xuedong Wei, Yu Ye, Bo Yang, Leland W.K. Chung, Fubo Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2018.00839

Evidence for the Involvement of Fatty Acid Biosynthesis and Degradation in the Formation of Insect Sex Pheromone-Mimicking Chiloglottones in Sexually Deceptive Chiloglottis Orchids
Cited by: 7
Author(s): Darren Chern Jan Wong, Ranamalie Amarasinghe, Eran Pichersky, Rod Peakall
Software Mentions: 1
Published: over 8 years ago

10.1186/s13020-021-00439-w

Transcriptomics‐based analysis of the mechanism by which Wang-Bi capsule alleviates joint destruction in rats with collagen‐induced arthritis
Cited by: 5
Author(s): Haiyang Shu, Hanxiao Zhao, Yingjie Shi, Cheng Lü, Li Li, Ning Zhao, Aiping Lü, Xiaojuan He
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11071875

Drinking Water with Saccharin Sodium Alters the Microbiota-Gut-Hypothalamus Axis in Guinea Pig
Cited by: 5
Author(s): Junrong Li, Shanli Zhu, Zengpeng Lv, Hongjian Dai, Zhe Wang, Enayatullah Hamdard, Sheeraz Mustafa, Yan Fu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-73075-3

SMRT sequencing of the full-length transcriptome of Odontotermes formosanus (Shiraki) under Serratia marcescens treatment
Cited by: 12
Author(s): Kai Feng, Xiaoyu Lu, Jian Luo, Fang Tang
Software Mentions: 1
Published: about 6 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583