bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-44568-7

Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs
Cited by: 6
Author(s): Konrad Ocalewicz, Artur Gurgul, Klaudia Pawlina-Tyszko, Tomasz Szmatoła, Igor Jasielczuk, Monika Bugno‐Poniewierska, Stefan Dobosz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43985-y

Ampk regulates IgD expression but not energy stress with B cell activation
Cited by: 13
Author(s): Lynnea R. Waters, Fasih M. Ahsan, Johanna ten Hoeve, Jason Hong, Diane N. H. Kim, Aspram Minasyan, Daniel Braas, Thomas G. Graeber, Thomas A. Zangle, Michael A. Teitell
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.6832

Genome-wide identification and expression profile analysis of the Hsp20 gene family in Barley (Hordeum vulgare L.)
Cited by: 21
Author(s): Jie Li, Xinhao Liu
Software Mentions: 1
Published: over 7 years ago

10.7150/ijbs.58422

Long noncoding RNA SH3PXD2A-AS1 promotes colorectal cancer progression by regulating p53-mediated gene transcription
Cited by: 6
Author(s): Pingfu Hou, Tian Lin, Sen Meng, Meilin Shi, Fang Chen, Tao Jiang, Zhongwei Li, Minle Li, Sufang Chu, Junnian Zheng, Jing Bai
Software Mentions: 1
Published: almost 6 years ago

10.3390/life11060589

Comparative Physiological and Transcriptomic Profiling Offers Insight into the Sexual Dimorphism of Hepatic Metabolism in Size-Dimorphic Spotted Scat (Scatophagus argus)
Cited by: 6
Author(s): Huapu Chen, Dongneng Jiang, Zhiyuan Li, Yaorong Wang, Xiao Yang, Shuangfei Li, Shuisheng Li, Wei Yang, Guangli Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.623610

Therapeutic Potential of TNFα and IL1β Blockade for CRS/ICANS in CAR-T Therapy via Ameliorating Endothelial Activation
Cited by: 15
Author(s): Yunshuo Chen, Ranran Li, Siqi Shang, Xiaofeng Yang, Lei Li, Wenbo Wang, Yueying Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22147570

Somatotroph Tumors and the Epigenetic Status of the GNAS Locus
Cited by: 4
Author(s): Pauline Romanet, Justine Galluso, Peter Kamenický, Mirella Hage, Marily Theodoropoulou, Catherine Roche, Thomas Graillon, Heather C. Etchevers, D. De Murat, Grégory Mougel, Dominique Figarella‐Branger, Henry Dufour, Thomas Cuny, Guillaume Assié, Anne Barlier
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8024

Competing endogenous RNA (ceRNA) hypothetic model based on comprehensive analysis of long non-coding RNA expression in lung adenocarcinoma
Cited by: 16
Author(s): Xiwen Wang, Rui Su, Qiqiang Guo, Jia Liu, Banlai Ruan, Guiling Wang
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.11586

Comparative anatomical and transcriptomic analyses of the color variation of leaves in Aquilaria sinensis
Cited by: 1
Author(s): Jiming Gao, Tong Chen, Chao Jiang, Tielin Wang, Ou Huang, Xiang Zhang, Juan Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45451-1

In-depth analysis of swim bladder-associated microbiota in rainbow trout (Oncorhynchus mykiss)
Cited by: 14
Author(s): Alejandro Villasante, C. Ramı́rez, Héctor Rodríguez, Natalia Catalán, Osmán Díaz, Rodrigo Rojas, Rafael Opazo, Jaime Romero
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-021-07888-5

Research on the drought tolerance mechanism of Pennisetum glaucum (L.) in the root during the seedling stage
Cited by: 14
Author(s): Ailing Zhang, Jicheng Yang, Min Sun, Chuang Lin, Puding Zhou, Juncai Ren, Dan Luo, Xiaoshan Wang, Congyu Ma, Xinquan Zhang, Guangyan Feng, Gang Nie, Linkai Huang
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.58026

Deciphering the effects of PYCR1 on cell function and its associated mechanism in hepatocellular carcinoma
Cited by: 6
Author(s): Yijuan Xu, Wenpu Zuo, Xiao Wang, Qinle Zhang, Xiang Gan, Nguan Soon Tan, Wenxian Jia, Jiayi Liu, Zhouquan Li, Bo Zhou, Dong Zhao, Zhibin Xie, Yanjun Tan, Shu Zheng, Chengwu Liu, Hongtao Li, Zhijian Chen, Xiaoli Yang, Zhichuan Huang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-45047-9

Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture
Cited by: 71
Author(s): Mariana A. Branco, João P. Cotovio, Carlos Alberto Chirano Rodrigues, Sandra H. Vaz, Tiago G. Fernandes, Leonilde M. Moreira, Joaquim M. S. Cabral, Maria Margarida Diogo
Software Mentions: 1
Published: over 7 years ago

10.7150/ijbs.58657

Protopanaxadiol improves endometriosis associated infertility and miscarriage in sex hormones receptors-dependent and independent manners
Cited by: 11
Author(s): Zhen‐Zhen Lai, Hui‐Li Yang, Jing Shi, Hui‐Hui Shen, Yan Wang, Kai‐Kai Chang, Tao Zhang, Jiang‐Feng Ye, Jiansong Sun, Xue Qiu, Ming‐Qing Li
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-018-0897-x

Vitexin compound 1, a novel extraction from a Chinese herb, suppresses melanoma cell growth through DNA damage by increasing ROS levels
Cited by: 48
Author(s): Nian Liu, Kuan Song Wang, Min Qi, Ying Zhou, Guang Zeng, Juan Tao, Jiayi Zhou, Jiang Lin Zhang, Xiang Chen, Cong Peng
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.00068

Transcriptomic Study of Porcine Small Intestine Epithelial Cells Reveals Important Genes and Pathways Associated With Susceptibility to Escherichia coli F4ac Diarrhea
Cited by: 8
Author(s): Serafino M. A. Augustino, Qiang Xu, Xueqin Liu, Lei Liu, Qin Zhang, Ying Yu
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1032-3

PAGE4 promotes prostate cancer cells survive under oxidative stress through modulating MAPK/JNK/ERK pathway
Cited by: 18
Author(s): Chengcheng Lv, Shui Fu, Qingzhuo Dong, Zi Yu, Gejun Zhang, Chuize Kong, Cheng Fu, Yu Zeng
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-46143-6

Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms
Cited by: 31
Author(s): Ross T. Slater, Lucy R. Frost, Sian Jossi, Andrew Millard, Meera Unnikrishnan
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201505088

Retracted: Haemophilus influenzae responds to glucocorticoids used in asthma therapy by modulation of biofilm formation and antibiotic resistance
Cited by: 19
Author(s): Chris Earl, Teh Wooi Keong, Shi-Qi An, Sarah Murdoch, Yvonne McCarthy, Junkal Garmendia, Joseph Ward, J. Maxwell Dow, Liang Yang, George A. O’Toole, Robert P. Ryan
Software Mentions: 1
Published: over 11 years ago

10.7717/peerj.3315

Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled byHalobacteriovoraxpredators
Cited by: 59
Author(s): Rory M. Welsh, Stephanie M. Rosales, Jesse Zaneveld, Jérôme P. Payet, Ryan McMinds, Steven L Hubbs, Rebecca L. Vega Thurber
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-46841-1

Changes in nuclear and cytoplasmic microRNA distribution in response to hypoxic stress
Cited by: 53
Author(s): Tiia A. Turunen, Thomas C. Roberts, Pia Laitinen, Mari-Anna Väänänen, Paula Korhonen, Tarja Malm, Seppo Ylä‐Herttuala, Mikko P. Turunen
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-06855-w

Transcriptomic and proteomic analyses of ovarian follicles reveal the role of VLDLR in chicken follicle selection
Cited by: 23
Author(s): Qiuyue Chen, Yiya Wang, Zemin Liu, Xiaoli Guo, Yuena Sun, Kang Li, Yunliang Jiang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-46966-3

Transcriptome analysis identifies a robust gene expression program in the mouse intestinal epithelium on aging
Cited by: 9
Author(s): Juri Kazakevych, Elena Stoyanova, Anke Liebert, Patrick Varga‐Weisz
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.3408

Comparative transcriptome analysis of isonuclear-alloplasmic lines unmask key transcription factor genes and metabolic pathways involved in sterility of maize CMS-C
Cited by: 13
Author(s): Chuan Li, Zhigang Zhao, Yongming Liu, Bing Liu, Shuxian Guan, Hai Long, Jing Wang, Yanli Lu, Mengji Cao
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22147557

A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides
Cited by: 1
Author(s): Katrin M. H. Eisenhardt, Bernhardt Remes, Julian Grützner, Daniel-Timon Spanka, Andreas Jäger, Gabriele Klug
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8797

Pan-cancer systematic identification of lncRNAs associated with cancer prognosis
Cited by: 3
Author(s): Matthew Ung, Evelien Schaafsma, Daniel Mattox, George L. Wang, Chao Cheng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-47444-6

Functionalization of Brain Region-specific Spheroids with Isogenic Microglia-like Cells
Cited by: 112
Author(s): Liqing Song, Xuegang Yuan, Zachary Jones, Cynthia Vied, Miao Yu, Mark Marzano, Thien Hua, Qing‐Xiang Amy Sang, Jingjiao Guan, Teng Ma, Yi Zhou, Yan Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-019-1241-9

Minichromosome maintenance 3 promotes hepatocellular carcinoma radioresistance by activating the NF-κB pathway
Cited by: 29
Author(s): Qing Yang, Binhui Xie, Hui Tang, Meng Wang, Changchang Jia, Xiaomei Zhang, Yi Zhang, Jianwen Zhang, Heping Li, Binsheng Fu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-47737-w

The TM6SF2 E167K genetic variant induces lipid biosynthesis and reduces apolipoprotein B secretion in human hepatic 3D spheroids
Cited by: 73
Author(s): Sebastian Prill, Andrea Caddeo, Guido Baselli, Oveis Jamialahmadi, Paola Dongiovanni, Raffaela Rametta, Kajsa P. Kanebratt, Arturo Pujia, Piero Pingitore, Rosellina Margherita Mancina, Daniel Lindén, Carl Whatling, Annika Janefeldt, Mikael Kozyra, Magnus Ingelman‐Sundberg, Luca Valenti, Tommy Andersson, Stefano Romeo
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-019-1427-1

Impact of Docetaxel on blood-brain barrier function and formation of breast cancer brain metastases
Cited by: 9
Author(s): Simon Bernatz, Elena I. Ilina, Kavi Devraj, Patrick N. Harter, Klaus Mueller, Sascha Kleber, Yannick Braun, Cornelia Penski, Christoph Renner, Rashi Halder, Lukas Jennewein, Christine Solbach, Frits Thorsen, Bernhard Paulweber, Axel Mischo, Michel Mittelbronn
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.21577

Tamoxifen sensitivity-related microRNA-342 is a useful biomarker for breast cancer survival
Cited by: 37
Author(s): Joseph C. Young, Tsutomu Kawaguchi, Li Yan, Qianya Qi, Song Liu, Kazuaki Takabe
Software Mentions: 1
Published: about 9 years ago

10.1038/s42003-021-02284-x

SPX-related genes regulate phosphorus homeostasis in the marine phytoplankton, Phaeodactylum tricornutum
Cited by: 14
Author(s): Kaidian Zhang, Zhi Zhou, Jiashun Li, Jingtian Wang, Liying Yu, Senjie Lin
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-018-0166-8

Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria
Cited by: 35
Author(s): Catherine Colas des Francs‐Small, Lilian Vincis Pereira Sanglard, Ian Small
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007974

Humoral immunity prevents clinical malaria during Plasmodium relapses without eliminating gametocytes
Cited by: 15
Author(s): Chester J. Joyner, Cristiana Ferreira Alves de Brito, Celia L. Saney, Regina Joice Cordy, Maren L. Smith, Stacey A. Lapp, Mónica Cabrera-Mora, Shuya Kyu, Nicolas Lackman, Mustafa V. Nural, Jeremy D. DeBarry, Jessica C. Kissinger, Mark P. Styczynski, F Eun-Hyung Lee, Tracey J. Lamb, Mary R. Galinski
Software Mentions: 1
Published: about 7 years ago

10.1038/s42003-021-01769-z

Dexamethasone and lactoferrin induced PMN-MDSCs relieved inflammatory adverse events of anti-cancer therapy without tumor promotion
Cited by: 2
Author(s): Xing Li, Jie Chen, Yongjian Chen, Yidan Qiao, Liyun Zhao, Nan Jiang, Xiang‐Yuan Wu, Yan‐Fang Xing
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1008048

Plasmodium kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission
Cited by: 30
Author(s): Mohammad Zeeshan, F. B. Shilliday, Tianyang Liu, Steven Abel, Tobias Mourier, David J. P. Ferguson, Edward Rea, Rebecca R. Stanway, Magali Roques, Desiree Williams, Emilie Daniel, Declan Brady, A. J. Roberts, Anthony A. Holder, Arnab Pain, Karine G. Le Roch, Carolyn A. Moores, Rita Tewari
Software Mentions: 1
Published: about 7 years ago

10.1111/cpr.12782

Derivation of porcine extraembryonic endoderm‐like cells from blastocysts
Cited by: 6
Author(s): Yán Li, Shuang Wu, Yang Yu, Heng Zhang, Renyue Wei, Jiawei Lv, Mingming Cai, Yang Xu, Yu Zhang, Liu Z
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1008072

Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG
Cited by: 37
Author(s): Ogan K. Kumova, Adam J Fike, Jillian L. Thayer, Linda Nguyen, Joshua Chang Mell, Judy Mae Pascasio, Christopher J. Stairiker, Leticia G. León, Peter D. Katsikis, Alison J. Carey
Software Mentions: 1
Published: about 7 years ago

10.1111/cpr.13112

The combination of dextran sulphate and polyvinyl alcohol prevents excess aggregation and promotes proliferation of pluripotent stem cells in suspension culture
Cited by: 2
Author(s): Xianglian Tang, Haibin Wu, Jinghe Xie, Ning Wang, Qicong Chen, Zihang Zhong, Yueming Qiu, Jue Wang, Xiajing Li, Ping Situ, Liangxue Lai, Mark Α. Zern, Honglin Chen, Yuyou Duan
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-019-0775-6

TERT expression is susceptible to BRAF and ETS-factor inhibition in BRAFV600E/TERT promoter double-mutated glioma
Cited by: 25
Author(s): Lisa Gabler, Daniela Lötsch, Dominik Kirchhofer, Sushilla van Schoonhoven, Hannah Maren Schmidt, Lisa Mayr, Christine Pirker, Katharina Neumayer, Carina Dinhof, Lucia Kastler, Amedeo A. Azizi, Christian Dorfer, Thomas Czech, Christine Haberler, Andreas Peyrl, Rajiv Kumar, Irene Slavc, Sabine Spiegl-Kreinecker, Johannes Gojo, Walter Berger
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.22216

GEJ cancers: gastric or esophageal tumors? searching for the answer according to molecular identity
Cited by: 14
Author(s): Williams Fernandes Barra, Fabiano Cordeiro Moreira, Aline Cruz, André Salim Khayat, Danielle Queiroz Calcagno, Ney Pereira Carneiro dos Santos, Rui Wanderley Mascarenhas, Taíssa Maíra Thomaz Araújo, Geraldo Ishak, Sâmia Demachki, Rommel Rodrı́guez Burbano, Ândrea Ribeiro-dos-Santos, Sidney Emanuel Batista dos Santos, Gregory J. Riggins, Paulo Pimentel de Assumpção
Software Mentions: 1
Published: about 9 years ago

10.1007/s00018-019-03165-7

MiR-17 and miR-19 cooperatively promote skeletal muscle cell differentiation
Cited by: 36
Author(s): Delin Kong, Mei He, Lin Yang, Rongtao Zhou, Yunjun Yan, Liang Yang, Chun‐Bo Teng
Software Mentions: 1
Published: over 7 years ago

10.1007/s00018-021-03880-0

Stromal interaction molecule 1 (STIM1) knock down attenuates invasion and proliferation and enhances the expression of thyroid-specific proteins in human follicular thyroid cancer cells
Cited by: 7
Author(s): Muhammad Asghar, Taru Lassila, Ilkka Paatero, Van Dien Nguyen, Pauliina Kronqvist, Jixi Zhang, Anna Slita, Christoffer Löf, You Zhou, Jessica M. Rosenholm, Kid Törnquist
Software Mentions: 1
Published: over 5 years ago

10.1038/s41423-021-00636-5

Placenta-derived IL-32β activates neutrophils to promote preeclampsia development
Cited by: 11
Author(s): Dan Liú, Qiang Li, Hailin Ding, Guangfeng Zhao, Zhiyin Wang, Chenrui Cao, Yimin Dai, Mingming Zheng, Xiangyu Zhu, Qianwen Wu, Ya Wang, Honglei Duan, Hanfei Tang, Xianyan Lu, Yayi Hou, Yali Hu
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jcmgh.2020.09.014

Inducible Deletion of YAP and TAZ in Adult Mouse Smooth Muscle Causes Rapid and Lethal Colonic Pseudo-Obstruction
Cited by: 11
Author(s): Fatima Daoud, Johan Holmberg, Azra Alajbegović, Mario Grossi, Catarina Rippe, Karl Swärd, Sebastian Albinsson
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms19051467

Circulating MicroRNAs in Young Patients with Acute Coronary Syndrome
Cited by: 19
Author(s): Kind-Leng Tong, Ahmad Syadi Mahmood Zuhdi, Wan Azman Wan Ahmad, Paul M. Vanhoutte, João Pedro de Magalhães, Mohd Rais Mustafa, Pooi-Fong Wong
Software Mentions: 1
Published: over 8 years ago

10.1186/s11658-021-00285-6

Comprehensive RNA sequencing in primary murine keratinocytes and fibroblasts identifies novel biomarkers and provides potential therapeutic targets for skin-related diseases
Cited by: 7
Author(s): Tiancheng Wang, Zhenwei Zhou, Enjing Luo, Jinghong Zhong, Daqing Zhao, Haisi Dong, Baojin Yao
Software Mentions: 1
Published: about 5 years ago

10.1016/j.chom.2018.04.013

The Bicarbonate Transporter SLC4A7 Plays a Key Role in Macrophage Phagosome Acidification
Cited by: 61
Author(s): Vitaly Sedlyarov, Ruth Eichner, Enrico Gottardi, Patrick Essletzbichler, Ulrich Goldmann, Paula Nunes-Hasler, Ismet Srndic, Anna Moskovskich, Leonhard X. Heinz, Felix Kartnig, Johannes W. Bigenzahn, Manuele Rebsamen, Pavel Kovarik, Nicolas Demaurex, Giulio Superti‐Furga
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1008270

New 2-Ethylthio-4-methylaminoquinazoline derivatives inhibiting two subunits of cytochrome bc1 in Mycobacterium tuberculosis
Cited by: 36
Author(s): Andréanne Lupien, Caroline S. Foo, Svetlana Savina, Anthony Vocat, Jérémie Piton, Natalia Monakhova, Andrej Benjak, Dirk A. Lamprecht, Adrie J. C. Steyn, Kévin Pethe, Vadim Makarov, Stewart T. Cole
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.chom.2017.04.004

A Rab20-Dependent Membrane Trafficking Pathway Controls M. tuberculosis Replication by Regulating Phagosome Spaciousness and Integrity
Cited by: 70
Author(s): Laura Schnettger, Angela Rodgers, Urška Repnik, Rachel Lai, Gang Pei, Martijn Verdoes, Robert J. Wilkinson, Douglas Young, Maximiliano G. Gutiérrez
Software Mentions: 1
Published: over 9 years ago

10.1038/s41421-020-0183-x

A bioenergetic shift is required for spermatogonial differentiation
Cited by: 19
Author(s): Wei Chen, Zhaoran Zhang, Che-Jung Chang, Zhongyue Yang, Pengxiang Wang, Haihui Fu, Wei Xiao, Eric Chen, Suxu Tan, Wen Huang, Liangliang Sun, Ting Ni, Yi Yang, Yuan Wang
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.21877

Azacitidine combined with the selective FLT3 kinase inhibitor crenolanib disrupts stromal protection and inhibits expansion of residual leukemia-initiating cells in FLT3-ITD AML with concurrent epigenetic mutations
Cited by: 14
Author(s): Anne-Kathrin Garz, Saskia Wolf, Sonja Grath, Verena I. Gaidzik, Stefan Habringer, Binje Vick, Martina Rudelius, Christoph Ziegenhain, Sylvia Herold, Marie‐Theresa Weickert, Martha Smets, Christian Peschel, Robert A.J. Oostendorp, Sebastian Bultmann, Irmela Jeremias, Christian Thiede, Konstanze Döhner, Ulrich Keller, Katharina Götze
Software Mentions: 1
Published: about 9 years ago

10.1038/srep45327

Copy number variation profile in the placental and parental genomes of recurrent pregnancy loss families
Cited by: 26
Author(s): Laura Kasak, Kristiina Rull, Siim Sõber, Maris Laan
Software Mentions: 1
Published: over 9 years ago

10.1038/s41421-021-00291-0

Autologous transplantation of thecal stem cells restores ovarian function in nonhuman primates
Cited by: 8
Author(s): Hong Chen, Kai Xia, Weijun Huang, Huijian Li, Chao Wang, Yuanchen Ma, Jianhui Chen, Peng Luo, Shuwei Zheng, Jiancheng Wang, Yichuan Wang, Dong Lin, Zhipeng Tan, Xiaomin Lai, Frank Fuxiang Mao, Weiqiang Li, Xiaoyan Liang, Tao Wang, Andy Peng Xiang, Ke Qin
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.22724

Optimizing prognosis-related key miRNA-target interactions responsible for cancer metastasis
Cited by: 1
Author(s): Hongying Zhao, Huating Yuan, Jing Hu, Chaohan Xu, Gaoming Liao, Wenkang Yin, Liwen Xu, Li Wang, Xinxin Zhang, Shi Ai, Jing Li, Yun Xiao
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep45458

Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses
Cited by: 29
Author(s): Andrea Vannini, Eva Pinatel, Paolo Emidio Costantini, Simone Pelliciari, Davide Roncarati, Simone Puccio, Gianluca De Bellis, Clelia Peano, Alberto Danielli
Software Mentions: 1
Published: over 9 years ago

10.1038/s41420-021-00508-x

ETV4 promotes breast cancer cell stemness by activating glycolysis and CXCR4-mediated sonic Hedgehog signaling
Cited by: 24
Author(s): Tao Zhu, Jinsen Zheng, Wei Zhuo, Pinhua Pan, Min Li, Wei Zhang, Hong‐Hao Zhou, Yang Gao, Xi Li, Zhao‐Qian Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-020-00397-6

A longitudinal study defined circulating microRNAs as reliable biomarkers for disease prognosis and progression in ALS human patients
Cited by: 26
Author(s): Gabriella Dobrowolny, Julie Martone, Elisa Lepore, Irene Casola, Antonio Petrucci, Maurizio Inghilleri, Mariangela Morlando, Alessio Colantoni, Bianca Maria Scicchitano, Andrea Calvo, Giulia Bisogni, Adriano Chiò, Mario Sabatelli, Irene Bozzoni, Antonio Musarò
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms19092631

Transcriptome Analysis of Novosphingobium pentaromativorans US6-1 Reveals the Rsh Regulon and Potential Molecular Mechanisms of N-acyl-l-homoserine Lactone Accumulation
Cited by: 8
Author(s): Haijun Lu, Yili Huang
Software Mentions: 1
Published: about 8 years ago

10.1038/s41420-021-00593-y

Downregulated developmental processes in the postnatal right ventricle under the influence of a volume overload
Cited by: 4
Author(s): Chunxia Zhou, Sijuan Sun, Mengyu Hu, Yan Xiao, Xiafeng Yu, Lincai Ye, Lisheng Qiu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-01109-4

Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation
Cited by: 27
Author(s): Janne Purhonen, Jayasimman Rajendran, Matthias Mörgelin, Kristiina Uusi-Rauva, Shintaro Katayama, Kaarel Krjutškov, Elisabet Einarsdottir, Vidya Velagapudi, Juha Kere, Matti Jauhiainen, Vineta Fellman, Jukka Kallijärvi
Software Mentions: 1
Published: over 9 years ago

10.1038/s41420-020-00396-7

Histone demethylase KDM5A promotes tumorigenesis of osteosarcoma tumor
Cited by: 10
Author(s): Daohu Peng, Birong Lin, Mingzhong Xie, Ping Zhang, Qiqiang Guo, Qian Li, Qinwen Gu, Sijin Yang, Sen Li
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms19102924

Genome Wide Transcriptome Analysis Reveals Complex Regulatory Mechanisms Underlying Phosphate Homeostasis in Soybean Nodules
Cited by: 47
Author(s): Yingbin Xue, Q. J. Zhuang, Shengnan Zhu, Bi-Xian Xiao, Chaojie Liang, Hong Liao, Jichun Tian
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms19103158

Comparative Analysis of the Integument Transcriptomes between stick Mutant and Wild-Type Silkworms
Cited by: 3
Author(s): Tan D, Hai Hu, Xiaoling Tong, Minjin Han, Songyuan Wu, Xin Ding, Fangyin Dai, Cheng Lü
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-017-0242-x

Autophagy mediates glucose starvation-induced glioblastoma cell quiescence and chemoresistance through coordinating cell metabolism, cell cycle, and survival
Cited by: 44
Author(s): Lian Wang, Zhouchun Shang, Yang Zhou, Xinyu Hu, Yihong Chen, Yonggang Fan, Xiaoyü Wei, Liang Wu, Qiujuan Liang, Jun Zhang, Zhengliang Gao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-02628-w

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85
Cited by: 12
Author(s): Chia-Wei Wu, Thomas E. Spike, Dawn M. Klingeman, Miguel Rodríguez, Virgil R. Bremer, Steven D. Brown
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03453-w

Identification of a long non-coding RNA regulator of liver carcinoma cell survival
Cited by: 4
Author(s): Yulia Rybakova, John Gonzalez, Roman L. Bogorad, Vikash P. Chauhan, Yize L. Dong, Charles A. Whittaker, Timofei S. Zatsepin, Victor Koteliansky, Daniel G. Anderson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-02397-6

A-to-I editing in human miRNAs is enriched in seed sequence, influenced by sequence contexts and significantly hypoedited in glioblastoma multiforme
Cited by: 52
Author(s): Deepanjan Paul, Ashis Narayan Sinha, Ray A, Megha Lal, Subhashree Nayak, Anchal Sharma, Bharati Mehani, Debasish Mukherjee, Saurabh V. Laddha, Ashish Suri, Chitra Sarkar, Arijit Mukhopadhyay
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02298-8

Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize
Cited by: 25
Author(s): Vívian de Jesus Miranda, William F. Porto, Gabriel da Rocha Fernandes, Robert Pogue, Diego O. Nolasco, Ana Cláudia Guerra Araújo, L. V. Cota, Camila Guimarães de Freitas, Simoni Campos Dias, Octávio L. Franco
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03654-3

Synergistic effect of the TLR5 agonist CBLB502 and its downstream effector IL-22 against liver injury
Cited by: 9
Author(s): Nicolas Melin, Daniel Sánchez-Taltavull, René Fahrner, Adrian Keogh, Michel Dosch, Isabel Büchi, Yitzhak Zimmer, Michaela Medová, Guido Beldi, Daniel M. Aebersold, Daniel Candinas, Deborah Stroka
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-04018-7

The regulation of ferroptosis by MESH1 through the activation of the integrative stress response
Cited by: 19
Author(s): Chao-Chieh Lin, Chien‐Kuang Cornelia Ding, Tianai Sun, Jianli Wu, Kai-Yuan Chen, Pei Zhou, Jen-Tsan Chi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-03354-4

KDM6B is an androgen regulated gene and plays oncogenic roles by demethylating H3K27me3 at cyclin D1 promoter in prostate cancer
Cited by: 28
Author(s): Zhi Cao, Xiaolei Shi, Feng Tian, Yu Fang, Jason Wu, Stefan Mrđenović, Xinwen Nian, Jin Ji, Huan Xu, Kong Chen, Yisheng Xu, Xi Chen, Yuhua Huang, Xuedong Wei, Yu Ye, Bo Yang, Leland W.K. Chung, Fubo Wang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-02873-z

Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium
Cited by: 13
Author(s): Ofir Haramati, Anastasia Brodov, Idan Yelin, Avigail Atir-Lande, Nitzan Samra, Yoav Arava
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-018-1080-1

Activation of the interferon type I response rather than autophagy contributes to myogenesis inhibition in congenital DM1 myoblasts
Cited by: 13
Author(s): Milena Rizzo, Pascale Beffy, R. Del Carratore, Alessandra Falleni, Virginia Pretini, Romina D’Aurizio, Annalisa Botta, Monica Evangelista, Andrea Stoccoro, Fabio Coppedè, Denis Furling, Marcella Simili
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-03687-9

RNAseq based transcriptomics study of SMCs from carotid atherosclerotic plaque: BMP2 and IDs proteins are crucial regulators of plaque stability
Cited by: 19
Author(s): Iraide Alloza, Haize Goikuria, Juan Luis Idro, Juan Carlos Triviño, José María Fernández Velasco, Elena Elizagaray, María García-Barcina, Genoveva Montoya‐Murillo, E. Sarasola, Reyes Vega Manrique, María Del Mar Freijo, Koen Vandenbroeck
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-018-1261-y

Sanshool improves UVB-induced skin photodamage by targeting JAK2/STAT3-dependent autophagy
Cited by: 49
Author(s): Dan Hao, Xiang Wen, Lian Liu, Lian Wang, Xian‐Li Zhou, Yanmei Li, Xin Zeng, Gu He, Xian Jiang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-03987-0

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids
Cited by: 24
Author(s): Bart Cuypers, Malgorzata A. Domagalska, Pieter Meysman, Géraldine De Muylder, Manu Vanaerschot, Hideo Imamura, Franck Dumetz, Thomas-Wolf Verdonckt, Peter J. Myler, Gowthaman Ramasamy, Kris Laukens, Jean‐Claude Dujardin
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-017-0196-z

Oncogenic HSP60 regulates mitochondrial oxidative phosphorylation to support Erk1/2 activation during pancreatic cancer cell growth
Cited by: 74
Author(s): Chao Zhou, Hongwei Sun, Zheng Chen, Jing Gao, Qingzi Fu, Nianqi Hu, Xiaoli Shao, Yingying Zhou, Jingting Xiong, Kun Nie, Huaibin Zhou, Lijun Shen, Hezhi Fang, Jianxin Lyu
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-021-07561-x

Methamphetamine-induced changes in myocardial gene transcription are sex-dependent
Cited by: 5
Author(s): Hasitha Chavva, Daniel A. Brazeau, James Denvir, Donald A. Primerano, Jun Fan, Sarah L. Seeley, Boyd R. Rorabaugh
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-04616-6

Site-specific gene expression analysis using an automated tissue micro-dissection punching system
Cited by: 15
Author(s): Takuya Yoda, Masahito Hosokawa, Kazutaka Takahashi, Chikako Sakanashi, Haruko Takeyama, Hideki Kambara
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04250-2

Tumoral expression of drug and xenobiotic metabolizing enzymes in breast cancer patients of different ethnicities with implications to personalized medicine
Cited by: 34
Author(s): Yan Li, Albert Steppi, Yidong Zhou, Feng Mao, Philip Miller, Max M. He, Tingting Zhao, Qiang Sun, Jinfeng Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04743-0

Biochemical and genetic predictors of overall survival in patients with metastatic pancreatic cancer treated with capecitabine and nab-paclitaxel
Cited by: 5
Author(s): Daniela Bianconi, Gerwin Heller, Daniel Spies, Merima Herac, Andreas Gleiß, Sandra Liebmann-Reindl, Matthias Unseld, Markus Kieler, Werner Scheithauer, Berthold Streubel, Christoph Zielinski, Gerald W. Prager
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03940-0

Operative ubiquitin-specific protease 22 deubiquitination confers a more invasive phenotype to cholangiocarcinoma
Cited by: 5
Author(s): Yu Tian, Bo Tang, Cheng‐Ye Wang, Yan Wang, Jiakai Mao, Yifan Yao, Zhenming Gao, Rui Ling, Mingliang Ye, Shijie Cai, Liming Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5240-6

Yerba mate (Ilex paraguariensis, A. St.-Hil.) de novo transcriptome assembly based on tissue specific genomic expression profiles
Cited by: 8
Author(s): Jessica Vannina Fay, Chris Watkins, Ram Krishna Shrestha, Sergio Litwiñiuk, Liliana Noelia Talavera Stéfani, Cristian Antonio Rojas, Carina F. Argüelles, Julian A. Ferreras, Mario Cáccamo, Marcos Mateo Miretti
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41419-018-0623-9

Salvianolic acid B inhibits glycolysis in oral squamous cell carcinoma via targeting PI3K/AKT/HIF-1α signaling pathway
Cited by: 55
Author(s): Jie Wei, Jun Wu, Wen Xu, Hong Nie, Ruiqing Zhou, Rui Wang, Yang Liu, Guoyao Tang, Jianyong Wu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-021-03737-1

Small heat-shock protein HSPB3 promotes myogenesis by regulating the lamin B receptor
Cited by: 14
Author(s): Tatiana Tiago, Barbara Hummel, Federica Morelli, Valentina Basile, Jonathan Vinet, Veronica Galli, Laura Mediani, Francesco Antoniani, Silvia Pomella, Matteo Cassandri, Maria Giovanna Garone, Beatrice Silvestri, Marco Cimino, G. Cenacchi, Roberta Costa, Vincent Mouly, Ina Poser, Esti Yeger-Lotem, Alessandro Rosa, Simon Alberti, Rossella Rota, Anat Ben‐Zvi, Ritwick Sawarkar, Serena Carra
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.27528

Synergistic cytotoxic activity of cannabinoids fromcannabis sativaagainst cutaneous T-cell lymphoma (CTCL)in-vitroandex-vivo
Cited by: 24
Author(s): Moran Mazuz, Amir Tiroler, Lilach Moyal, Emmilia Hodak, Stalin Nadarajan, A. C. Vinayaka, Batia Gorovitz-Haris, Ido Lubin, Avi Drori, Guy Drori, Owen Van Cauwenberghe, Adi Faigenboim, Dvora Namdar, Iris Amitay‐Laish, Hinanit Koltai
Software Mentions: 1
Published: over 6 years ago

10.1186/s12863-017-0499-1

Transcriptome profiling of Arabian horse blood during training regimens
Cited by: 21
Author(s): Katarzyna Ropka‐Molik, Monika Stefaniuk‐Szmukier, Kacper Żukowski, Katarzyna Piórkowska, Artur Gurgul, Monika Bugno‐Poniewierska
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-020-03060-1

Metabolic defects in splenic B cell compartments from patients with liver cirrhosis
Cited by: 2
Author(s): Man Huang, Xiaoju Liu, Haocheng Ye, Xinyang Zhao, Juanjuan Zhao, Yang Liu, Xiaomeng He, Mengmeng Qu, Jing Pan, Baidong Hou, Yue Cheng, Zhenwen Liu, Zhiwei Li, Lei Liu, Jian Sun, Shuye Zhang, Zheng Zhang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-021-03606-x

TFAP2A potentiates lung adenocarcinoma metastasis by a novel miR-16 family/TFAP2A/PSG9/TGF-β signaling pathway
Cited by: 28
Author(s): Yanlu Xiong, Yangbo Feng, Jinbo Zhao, Jie Lei, Tianyun Qiao, Yongsheng Zhou, Qiang Lü, Tao Jiang, Lintao Jia, Han Ye
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-018-0453-9

Use of the XRCC2 promoter for in vivo cancer diagnosis and therapy
Cited by: 11
Author(s): Yu Chen, Zhen Li, Zhu Xu, Herman Tang, Wenbo Guo, Xian-He Sun, Wenjun Zhang, Jian Zhang, Xiaoping Wan, Ying Jiang, Zhiyong Mao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-08148-x

Comprehensive miRNA expression profiling in human T-cell acute lymphoblastic leukemia by small RNA-sequencing
Cited by: 46
Author(s): Annelynn Wallaert, Wouter Van Loocke, Lucie Hernandez, Tom Taghon, Franki Speleman, Pieter Van Vlierberghe
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-04078-9

Alcohol-abuse drug disulfiram targets pediatric glioma via MLL degradation
Cited by: 10
Author(s): Stefanie Meier, Sandra Cantilena, Maria Victoria Niklison Chirou, John Anderson, Darren Hargrave, Paolo Salomoni, Jasper de Boer, David Michod
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13019

Compartmentalized effects of aging on group 2 innate lymphoid cell development and function
Cited by: 21
Author(s): Shanti S. D’Souza, Xiaofei Shen, Ivan Ting Hin Fung, Long‐Yun Ye, Marcy Kuentzel, Sridar V. Chittur, Yasubumi Furuya, Christian W. Siebel, Ivan Maillard, Dennis W. Metzger, Qi Yang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-08499-5

Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics
Cited by: 41
Author(s): Ashish Deshpande, Krishanpal Anamika, Vineet Jha, Hemangi G. Chidley, Pranjali S. Oak, Narendra Y. Kadoo, K. H. Pujari, Ashok P. Giri, Vidya S. Gupta
Software Mentions: 1
Published: about 9 years ago

10.1186/s12863-019-0794-0

Comparative gene expression profiling of muscle reveals potential candidate genes affecting drip loss in pork
Cited by: 6
Author(s): Xueyan Zhao, Cheng Wang, Yanping Wang, Haichao Lin, Huaizhong Wang, Hongmei Hu, Jiying Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/cddis.2017.130

Functional inhibition of acid sphingomyelinase by Fluphenazine triggers hypoxia-specific tumor cell death
Cited by: 25
Author(s): Saskia Klutzny, Ralf Lesche, Matthias Keck, Stefan Kaulfuß, Andreas Schlicker, Sven Christian, Carolyn Sperl, Roland Neuhaus, Jeffrey Mowat, Michael Steckel, Bjoern Riefke, Stefan Prechtl, Karsten Parczyk, Patrick Steigemann
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19123892

Distinct Patterns of PPARγ Promoter Usage, Lipid Degradation Activity, and Gene Expression in Subcutaneous Adipose Tissue of Lean and Obese Swine
Cited by: 5
Author(s): Bowen Song, Shengwei Di, Shiquan Cui, Na Chen, Huan Wang, Xuan Wang, Qian Gao, Guizhi Tong, Hongbao Wang, Xuankai Huang, Liyan Ding, Ying Gao, Jun Li, Xibiao Wang
Software Mentions: 1
Published: almost 8 years ago

10.1111/acel.12817

Proper splicing contributes to visual function in the agingDrosophilaeye
Cited by: 32
Author(s): Rachel Stegeman, Hana Hall, Spencer E. Escobedo, Henry Chang, Vikki M. Weake
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-018-1132-2

RNA sequencing of early round goby embryos reveals that maternal experiences can shape the maternal RNA contribution in a wild vertebrate
Cited by: 16
Author(s): Irene Adrian‐Kalchhauser, Jean‐Claude Walser, Michaela Schwaiger, Patricia Burkhardt‐Holm
Software Mentions: 1
Published: over 8 years ago

Projects: bioconductor: DESeq2

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Papers Mentioning DESeq2 9,583