bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3390/cells9040987

FTO Intronic SNP Strongly Influences Human Neck Adipocyte Browning Determined by Tissue and PPARγ Specific Regulation: A Transcriptome Analysis
Cited by: 23
Author(s): Beáta Tóth, Rini Arianti, Abhirup Shaw, Attila Vámos, Zoltán Veréb, Szilárd Póliska, Ferenc Győry, Zsolt Bacsó, László Fésüs, Endre Kristóf
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103595

Comparative Transcriptome Analysis of Two Aegilops tauschii with Contrasting Drought Tolerance by RNA-Seq
Cited by: 18
Author(s): Xinpeng Zhao, Shenglong Bai, Lechen Li, Xue Han, Jia-hui Li, Yumeng Zhu, Yuan Fang, Dale Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-43468-0

Emulating the early phases of human tooth development in vitro
Cited by: 15
Author(s): Jennifer Rosowski, Julia Bräunig, Anna-Klara Amler, Frank Peter Strietzel, Roland Lauster, Mark Rosowski
Software Mentions: 1
Published: over 7 years ago

10.3390/cells10030522

Role of Heme-Oxygenase-1 in Biology of Cardiomyocytes Derived from Human Induced Pluripotent Stem Cells
Cited by: 4
Author(s): Mateusz Jeż, Alicja Martyniak, Kalina Andrysiak, Olga Mucha, Krzysztof Szade, Alan Kania, Łukasz Chrobok, Katarzyna Palus-Chramiec, Anna Magdalena Sanetra, M.H. Lewandowski, Ewelina Pośpiech, Jacek Stępniewski, Józef Dulak
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10082011

The Role of Galanin during Bacterial Infection in Larval Zebrafish
Cited by: 1
Author(s): Natalia Nowik, Tomasz K. Prajsnar, A. Przyborowska, Krzysztof Rakus, Waldemar Sienkiewicz, Herman P. Spaink, Piotr Podlasz
Software Mentions: 1
Published: over 5 years ago

10.1016/j.stem.2018.07.002

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration
Cited by: 68
Author(s): Goran Tomić, Edward Morrissey, Sarah Kozar, Shani Ben‐Moshe, Alice Hoyle, Roberta Azzarelli, Richard Kemp, Chandra Sekhar Reddy Chilamakuri, Shalev Itzkovitz, Anna Philpott, Douglas J. Winton
Software Mentions: 1
Published: about 8 years ago

10.1016/j.stem.2018.05.001

Exit from Naive Pluripotency Induces a Transient X Chromosome Inactivation-like State in Males
Cited by: 31
Author(s): Elsa Joana Sousa, Hannah Stuart, Lawrence E. Bates, Mohammadmersad Ghorbani, Jennifer Nichols, Sabine Dietmann, José C.R. Silva
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-44568-7

Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs
Cited by: 6
Author(s): Konrad Ocalewicz, Artur Gurgul, Klaudia Pawlina-Tyszko, Tomasz Szmatoła, Igor Jasielczuk, Monika Bugno‐Poniewierska, Stefan Dobosz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43985-y

Ampk regulates IgD expression but not energy stress with B cell activation
Cited by: 13
Author(s): Lynnea R. Waters, Fasih M. Ahsan, Johanna ten Hoeve, Jason Hong, Diane N. H. Kim, Aspram Minasyan, Daniel Braas, Thomas G. Graeber, Thomas A. Zangle, Michael A. Teitell
Software Mentions: 1
Published: over 7 years ago

10.1038/s41422-020-0338-1

Three-dimensional bioprinted glioblastoma microenvironments model cellular dependencies and immune interactions
Cited by: 135
Author(s): Min Tang, Qi Xie, Ryan C. Gimple, Zheng Zhong, Trevor Tam, Jing Tian, Reilly L. Kidwell, Qiulian Wu, Briana C. Prager, Zhixin Qiu, Aaron Yu, Zhe Zhu, Pinar Mesci, Hui Jing, Jacob Schimelman, Pengrui Wang, Derrick Lee, Michael H. Lorenzini, Deobrat Dixit, Linjie Zhao, Shruti Bhargava, Tyler E. Miller, Xueyi Wan, Jing Tang, Bingjie Sun, Benjamin F. Cravatt, Alysson R. Muotri, Shaochen Chen, Jeremy Rich
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-020-01622-7

Chloroplast (Cp) Transcriptome of P. davidiana Dode×P. bolleana Lauch provides insight into the Cp drought response and Populus Cp phylogeny
Cited by: 4
Author(s): Xin Zhang, Chao Gu, Tianxu Zhang, Botong Tong, Heng Zhang, Yong-Pei Wu, Chuanping Yang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-021-01818-5

Adaptive evolution of Moniliophthora PR-1 proteins towards its pathogenic lifestyle
Cited by: 1
Author(s): Adrielle Ayumi de Vasconcelos, Juliana José, Paulo M. Tokimatu, Antônio Pedro Camargo, Paulo José Pereira Lima Teixeira, Daniela P. T. Thomazella, Paula Favoretti Vital do Prado, Gabriel Lorencini Fiorin, Juliana Leles Costa, Antônio Figueira, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira, Renata Moro Baroni
Software Mentions: 1
Published: over 5 years ago

10.14573/altex.1805301

A human population-based organotypic in vitro model for cardiotoxicity screening
Cited by: 34
Author(s): Fabian A. Grimm, Alexander D. Blanchette, John S. House, Kyle Ferguson, Nan‐Hung Hsieh, Chimeddulam Dalaijamts, Alec A Wright, Blake D. Anson, Fred A. Wright, Weihsueh A. Chiu, Ivan Rusyn
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.xcrm.2021.100206

Effects of Lactobacillus reuteri supplementation on the gut microbiota in extremely preterm infants in a randomized placebo-controlled trial
Cited by: 28
Author(s): Magalí Martí, Johanne E. Spreckels, Purnika Damindi Ranasinghe, Erik Wejryd, Giovanna Marchini, Eva Sverremark-Ekström, Maria C. Jenmalm, Thomas Abrahamsson
Software Mentions: 1
Published: over 5 years ago

10.1016/j.xcrm.2021.100239

Transcriptional firing represses bactericidal activity in cystic fibrosis airway neutrophils
Cited by: 21
Author(s): Camilla Margaroli, Diego Moncada Giraldo, Dalia Gulick, Brian Dobosh, Vincent D. Giacalone, Osric Forrest, Fangxu Sun, C.D. Gu, Amit Gaggar, Haydn Kissick, Ronghu Wu, Greg Gibson, Rabindra Tirouvanziam
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2017.06.091

Dual RNA Processing Roles of Pat1b via Cytoplasmic Lsm1-7 and Nuclear Lsm2-8 Complexes
Cited by: 32
Author(s): Caroline Vindry, Aline Marnef, Helen Broomhead, Laure Twyffels, Sevim Ozgur, Georg Stoecklin, Miriam Llorian, Christopher C.W. Smith, Juan Mata, Dominique Weil, Nancy Standart
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-45451-1

In-depth analysis of swim bladder-associated microbiota in rainbow trout (Oncorhynchus mykiss)
Cited by: 14
Author(s): Alejandro Villasante, C. Ramı́rez, Héctor Rodríguez, Natalia Catalán, Osmán Díaz, Rodrigo Rojas, Rafael Opazo, Jaime Romero
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2020.108460

Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens
Cited by: 32
Author(s): Joshua B. Black, Sean R. McCutcheon, Shataakshi Dube, Alejandro Barrera, Tyler S. Klann, Grayson A. Rice, Shaunak S. Adkar, Scott H. Soderling, Timothy E. Reddy, Charles A. Gersbach
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2020.108278

PPARα Inhibition Overcomes Tumor-Derived Exosomal Lipid-Induced Dendritic Cell Dysfunction
Cited by: 72
Author(s): Xiaozhe Yin, Wenfeng Zeng, Bowen Wu, Luoyang Wang, Zihao Wang, Hongjian Tian, Luyao Wang, Yunhan Jiang, Ricky P. Clay, Xiuli Wei, Qin Yan, Fayun Zhang, Chunyu Zhang, Lingtao Jin, Wei Liang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-45047-9

Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture
Cited by: 71
Author(s): Mariana A. Branco, João P. Cotovio, Carlos Alberto Chirano Rodrigues, Sandra H. Vaz, Tiago G. Fernandes, Leonilde M. Moreira, Joaquim M. S. Cabral, Maria Margarida Diogo
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2021.109233

Probing the signaling requirements for naive human pluripotency by high-throughput chemical screening
Cited by: 24
Author(s): Shafqat Ali Khan, Kyoung Mi Park, Laura A. Fischer, Chen Dong, Tenzin Lungjangwa, Marta Jiménez, Dominick Casalena, Brian Chew, Sabine Dietmann, Douglas S. Auld, Rudolf Jaenisch, Thorold W. Theunissen
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-021-01231-5

Protein farnesylation is upregulated in Alzheimer’s human brains and neuron-specific suppression of farnesyltransferase mitigates pathogenic processes in Alzheimer’s model mice
Cited by: 11
Author(s): Angela Jeong, Shaowu Cheng, Rui Zhong, David A. Bennett, Martin O. Bergö, Li L
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2015.11.026

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1
Cited by: 65
Author(s): Cornelia Kilchert, Sina Wittmann, Monica Passoni, Sneha Shah, Sander Granneman, Lidia Vasiljeva
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.celrep.2017.07.009

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation
Cited by: 261
Author(s): Hisham Mohammed, Irene Hernando-Herraez, Aurora Savino, Antonio Scialdone, Iain C. Macaulay, Carla Mulas, Tamir Chandra, Thierry Voet, Wendy Dean, Jennifer Nichols, John C. Marioni, Wolf Reik
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-46143-6

Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms
Cited by: 31
Author(s): Ross T. Slater, Lucy R. Frost, Sian Jossi, Andrew Millard, Meera Unnikrishnan
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.01.054

Chloroplast Signaling Gates Thermotolerance in Arabidopsis
Cited by: 71
Author(s): Patrick Dickinson, Manoj Kumar, Cláudia Martinho, Seong Jeon Yoo, Hui Y. Lan, George Artavanis, Varodom Charoensawan, Mark Aurel Schöttler, Ralph Bock, Katja E. Jaeger, Philip A. Wigge
Software Mentions: 1
Published: almost 9 years ago

10.1111/cpr.12836

ITGBL1 promotes cell migration and invasion through stimulating the TGF‐β signalling pathway in hepatocellular carcinoma
Cited by: 26
Author(s): Wei Huang, Demin Yu, Mingjie Wang, Yue Han, Junyu Lin, Dong Wei, Jialin Cai, Bin Li, Peizhan Chen, Xinxin Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-46841-1

Changes in nuclear and cytoplasmic microRNA distribution in response to hypoxic stress
Cited by: 53
Author(s): Tiia A. Turunen, Thomas C. Roberts, Pia Laitinen, Mari-Anna Väänänen, Paula Korhonen, Tarja Malm, Seppo Ylä‐Herttuala, Mikko P. Turunen
Software Mentions: 1
Published: over 7 years ago

10.1111/cpr.12872

Dibenzazepine promotes cochlear supporting cell proliferation and hair cell regeneration in neonatal mice
Cited by: 4
Author(s): Jing Wu, Xinran Dong, Wen Li, Liping Zhao, Li Zhou, Shan Sun, Huawei Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-46966-3

Transcriptome analysis identifies a robust gene expression program in the mouse intestinal epithelium on aging
Cited by: 9
Author(s): Juri Kazakevych, Elena Stoyanova, Anke Liebert, Patrick Varga‐Weisz
Software Mentions: 1
Published: over 7 years ago

10.1111/cpr.13047

CircSLC7A2 protects against osteoarthritis through inhibition of the miR‐4498/TIMP3 axis
Cited by: 21
Author(s): Weiyu Ni, Chao Jiang, Yizheng Wu, Haitao Zhang, Lili Wang, Jasper H.N. Yik, Dominik R. Haudenschild, Shunwu Fan, Shuying Shen, Zhiyong Hu
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12010043

miR-10a-5p and miR-29b-3p as Extracellular Vesicle-Associated Prostate Cancer Detection Markers
Cited by: 44
Author(s): Thomas Worst, Christopher Previti, Katja Nitschke, Nicolle Diessl, Julia Christina Gross, Lena Hoffmann, Lisa M. Frey, V. Thomas, Christoph Kahlert, Karen Bieback, Adriana Torres Crigna, Fabia Fricke, Štefan Porubský, Niklas Westhoff, Jost von Hardenberg, Philipp Nuhn, Philipp Erben, Maurice Stephan Michel, Michael Boutros
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers12020464

Melanoma-Derived Exosomal miR-125b-5p Educates Tumor Associated Macrophages (TAMs) by Targeting Lysosomal Acid Lipase A (LIPA)
Cited by: 69
Author(s): Dennis Gerloff, Jana Luetzkendorf, Rose K. C. Moritz, Tom Wersig, Karsten Mäder, Lutz Müller, Cord Sunderkötter
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-47444-6

Functionalization of Brain Region-specific Spheroids with Isogenic Microglia-like Cells
Cited by: 112
Author(s): Liqing Song, Xuegang Yuan, Zachary Jones, Cynthia Vied, Miao Yu, Mark Marzano, Thien Hua, Qing‐Xiang Amy Sang, Jingjiao Guan, Teng Ma, Yi Zhou, Yan Li
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers12071745

Cancer Stem Cell-Inducing Media Activates Senescence Reprogramming in Fibroblasts
Cited by: 10
Author(s): Patrick M. Perrigue, Magdalena Rakoczy, Kamila Pawlicka, Agnieszka Belter, Małgorzata Giel-Pietraszuk, Mirosława Z. Naskręt-Barciszewska, Jan Barciszewski, Marek Figlerowicz
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-47737-w

The TM6SF2 E167K genetic variant induces lipid biosynthesis and reduces apolipoprotein B secretion in human hepatic 3D spheroids
Cited by: 73
Author(s): Sebastian Prill, Andrea Caddeo, Guido Baselli, Oveis Jamialahmadi, Paola Dongiovanni, Raffaela Rametta, Kajsa P. Kanebratt, Arturo Pujia, Piero Pingitore, Rosellina Margherita Mancina, Daniel Lindén, Carl Whatling, Annika Janefeldt, Mikael Kozyra, Magnus Ingelman‐Sundberg, Luca Valenti, Tommy Andersson, Stefano Romeo
Software Mentions: 1
Published: over 7 years ago

10.1186/s12861-020-00219-z

Identification of vital candidate microRNA/mRNA pairs regulating ovule development using high-throughput sequencing in hazel
Cited by: 11
Author(s): Jianfeng Liu, Qizheng Luo, Xingzheng Zhang, Qiang Zhang, Yufei Cheng
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13040754

Whole-Genome Sequencing of Retinoblastoma Reveals the Diversity of Rearrangements Disrupting RB1 and Uncovers a Treatment-Related Mutational Signature
Cited by: 11
Author(s): Helen Davies, Kevin D. Broad, Zerrin Onadim, Elizabeth Price, Xueqing Zou, Ibrahim Sheriff, Esin Kotiloğlu Karaa, Irene Scheimberg, M. Ashwin Reddy, Mandeep S. Sagoo, Shin-ichi Ohnuma, Serena Nik-Zainal
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13143488

Development of an Androgen Receptor Inhibitor Targeting the N-Terminal Domain of Androgen Receptor for Treatment of Castration Resistant Prostate Cancer
Cited by: 15
Author(s): Fuqiang Ban, Éric Leblanc, Ayşe Derya Cavga, Chia Chi Flora Huang, Mark R. Flory, Fan Zhang, Matthew E.K. Chang, Hélène Morin, Nada Lallous, Kriti Singh, Martin Gleave, Hisham Mohammed, Paul S. Rennie, Nathan A. Lack, Artem Cherkasov
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12061692

Integrated Assessment of Circulating Cell-Free MicroRNA Signatures in Plasma of Patients with Melanoma Brain Metastasis
Cited by: 15
Author(s): Matías A. Bustos, Kevin Tran, Negin Rahimzadeh, Rebecca Groß, Selena Y. Lin, Yoshiaki Shoji, Tomohiro Murakami, Christine L Boley, Linh Thanh Tran, Hunter Cole, Daniel F. Kelly, Steven O’Day, Dave S. B. Hoon
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-48991-8

Blocked O-GlcNAc cycling disrupts mouse hematopoeitic stem cell maintenance and early T cell development
Cited by: 26
Author(s): Lara K. Abramowitz, Christelle Harly, Arundhoti Das, Avinash Bhandoola, John A. Hanover
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48768-z

Microbiomic differences at cancer-prone oral mucosa sites with marijuana usage
Cited by: 10
Author(s): Taylor Newman, Laya P. Krishnan, Jessica Lee, Guy R. Adami
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers13123020

Splenic Volume as a Surrogate Marker of Immune Checkpoint Inhibitor Efficacy in Metastatic Non Small Cell Lung Cancer
Cited by: 7
Author(s): Loïck Galland, Julie Lecuelle, Laure Favier, Cléa Fraisse, Aurélie Lagrange, C. Kaderbhai, Caroline Truntzer, François Ghiringhelli
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13122999

NLRP7 Promotes Choriocarcinoma Growth and Progression through the Establishment of an Immunosuppressive Microenvironment
Cited by: 12
Author(s): Déborah Reynaud, Roland Abi Nahed, Nicolas Lemaître, Pierre Adrien Bolze, Waël Traboulsi, F. Sergent, Christophe Battail, Odile Filhol, Vincent Sapin, Houssine Boufettal, P. Hoffmann, Touria Aboussaouira, Padma Murthi, Rima Slim, Mohamed Benharouga, Nadia Alfaidy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79432-6

Oxylipins are implicated as communication signals in tomato–root-knot nematode (Meloidogyne javanica) interaction
Cited by: 12
Author(s): Nathalia Fitoussi, Eli J. Borrego, Michael V. Kolomiets, Qiao Xue, Patricia Bucki, Noa Sela, Eduard Belausov, Sigal Braun Miyara
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11091331

Elimination of SOX2/OCT4-Associated Prostate Cancer Stem Cells Blocks Tumor Development and Enhances Therapeutic Response
Cited by: 31
Author(s): Prasanna Kumar Vaddi, Mark Stamnes, Huojun Cao, Songhai Chen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-79770-5

The application of a biostimulant based on tannins affects root architecture and improves tolerance to salinity in tomato plants
Cited by: 43
Author(s): Cristina Campobenedetto, Giuseppe Mannino, Jules Beekwilder, Valeria Contartese, Rumyana Karlova, Cinzia M. Bertea
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-80063-0

Inhibition of microbiota-dependent TMAO production attenuates chronic kidney disease in mice
Cited by: 56
Author(s): Wenchao Zhang, Aika Miikeda, Jonathan E. Zuckerman, Xun Jia, Sarada Charugundla, Zhiqiang Zhou, Karolina Elżbieta Kaczor‐Urbanowicz, Clara E. Magyar, Fangfei Guo, Zeneng Wang, Matteo Pellegrini, Stanley L. Hazen, Susanne B. Nicholas, Aldons J. Lusis, Diana M. Shih
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13164148

PD-L1 Overexpression, SWI/SNF Complex Deregulation, and Profound Transcriptomic Changes Characterize Cancer-Dependent Exhaustion of Persistently Activated CD4+ T Cells
Cited by: 19
Author(s): Iga Jancewicz, Joanna Szarkowska, Ryszard Konopiński, M. Stachowiak, Monika Swiatek, Katarzyna Błachnio, Szymon Kubala, Paulina Oksinska, Pawel Cwiek, Natalia Rusetska, Agnieszka Tupalska, Natalia Żeber‐Lubecka, Ewa Grabowska, Bianka Świderska, Agata Malinowska, Michał Mikula, Beata Jagielska, Jan Walewski, Janusz A. Siedlecki, Tadeusz Sarnowski, Sergiusz Markowicz, Elżbieta Sarnowska
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/3984906

Suppression of Alzheimer’s Disease-Like Pathology Progression by Mitochondria-Targeted Antioxidant SkQ1: A Transcriptome Profiling Study
Cited by: 24
Author(s): Natalia A. Stefanova, Nikita I. Ershov, N. G. Kolosova
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers11121872

A Circulating miRNA Signature for Stratification of Breast Lesions among Women with Abnormal Screening Mammograms
Cited by: 12
Author(s): Sau Yeen Loke, Prabhakaran Munusamy, Geok Ling Koh, Claire Hian Tzer Chan, Preetha Madhukumar, Jee Liang Thung, Karsoon Tan, Kong Wee Ong, Wei Sean Yong, Yirong Sim, Chung Lie Oey, Si Ching Lim, Madelynn Chan, Teng Swan Juliana Ho, Boon Kheng James Khoo, Su Lin Jill Wong, Choon Hua Thng, Bee Kiang Chong, Ern Yu Tan, Veronique Kiak‐Mien Tan, Ann Siew Gek Lee
Software Mentions: 1
Published: almost 7 years ago

10.1155/2019/1681972

<i>Fusobacterium nucleatum</i>Facilitates Apoptosis, ROS Generation, and Inflammatory Cytokine Production by Activating AKT/MAPK and NF-<i>κ</i>B Signaling Pathways in Human Gingival Fibroblasts
Cited by: 48
Author(s): Wenyan Kang, Zhilong Jia, Di Tang, Zhanwei Zhang, Hui Gao, Kunlun He, Qiang Feng
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-80372-4

Parents with periodontitis impact the subgingival colonization of their offspring
Cited by: 11
Author(s): Mabelle Freitas Monteiro, Khaled Altabtbaei, Purnima Kumar, Márcio Zaffalon Casati, Karina Gonzáles Silvério, Enílson Antônio Sallum, Francisco Humberto Nociti-Júnior, Renato Corrêa Viana Casarin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-80454-3

De novo assembled salivary gland transcriptome and expression pattern analyses for Rhipicephalus evertsi evertsi Neuman, 1897 male and female ticks
Cited by: 4
Author(s): Ronel Pienaar, Daniel G. de Klerk, Minique H. de Castro, Jonathan Featherston, Ben J. Mans
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13164020

MiRNAs Correlate with HLA Expression in Uveal Melanoma: Both Up- and Downregulation Are Related to Monosomy 3
Cited by: 7
Author(s): Zahra Souri, Annemijn P A Wierenga, Emine Kılıç, Erwin Brosens, Stefan Böhringer, Wilma G. M. Kroes, Robert M. Verdijk, Pieter A. van der Velden, Gregorius P M Luyten, Martine J. Jager
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12051309

Metagenomic Analysis of Serum Microbe-Derived Extracellular Vesicles and Diagnostic Models to Differentiate Ovarian Cancer and Benign Ovarian Tumor
Cited by: 27
Author(s): Se Ik Kim, Nayeon Kang, Sangseob Leem, Jinho Yang, HyunA Jo, Maria Lee, Hee Seung Kim, Danny N. Dhanasekaran, Yoon Keun Kim, Taesung Park, Yong Sang Song
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13174491

The Expression Profiles and Deregulation of UDP-Glycosyltransferase (UGT) Genes in Human Cancers and Their Association with Clinical Outcomes
Cited by: 11
Author(s): Dong Hu, Shashikanth Marri, Peter I. Mackenzie, Julie-Ann Hulin, Ross A. McKinnon, Robyn Meech
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21124505

Hub Proteins Involved in RAW 264.7 Macrophages Exposed to Direct Current Electric Field
Cited by: 1
Author(s): Huijuan Li, Shibin Liu, Yongqian Du, Jie Tan, Jiayi Luo, Yu Sun
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12030766

Inhibiting WNT Ligand Production for Improved Immune Recognition in the Ovarian Tumor Microenvironment
Cited by: 16
Author(s): Whitney N. Goldsberry, Selene Meza‐Perez, Angelina I. Londoño, Ashwini A. Katre, Bryan T. Mott, B.M. Roane, Nidhi Goel, Jaclyn Wall, Sara J. Cooper, Lyse A. Norian, Troy D. Randall, Michael J. Birrer, Rebecca C. Arend
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21124202

Impaired Expression of Chloroplast HSP90C Chaperone Activates Plant Defense Responses with a Possible Link to a Disease-Symptom-Like Phenotype
Cited by: 9
Author(s): Shaikhul Islam, Sachin Ashok Bhor, Keisuke Tanaka, Hikaru Sakamoto, Takashi Yaeno, Hidetaka Kaya, Kappei Kobayashi
Software Mentions: 1
Published: over 6 years ago

10.1186/s12861-021-00240-w

Changes in the expression levels of elastic fibres in yak lungs at different growth stages
Cited by: 2
Author(s): Jingyi Li, Xiangqiong Meng, Lihan Wang, Hanry Yu, Honggang Yu, Qing Wei
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13020289

Synergism of Proneurogenic miRNAs Provides a More Effective Strategy to Target Glioma Stem Cells
Cited by: 7
Author(s): Adam Kosti, Rodrigo Barreiro, Gabriela D. A. Guardia, Shiva Ostadrahimi, Erzsebet Kokovay, Alexander Pertsemlidis, Pedro A. F. Galante, Luiz O. F. Penalva
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-81276-7

Analyzing the G3BP-like gene family of Arabidopsis thaliana in early turnip mosaic virus infection
Cited by: 15
Author(s): Hendrik Reuper, Khalid Amari, Björn Krenz
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13112584

Pivotal Role for Cxcr2 in Regulating Tumor-Associated Neutrophil in Breast Cancer
Cited by: 20
Author(s): Colin Timaxian, Christoph F.A. Vogel, Charlotte Orcel, Diana Vetter, Camille Durochat, Clarisse Chinal, Phuong Thao Nguyen, Marie-Laure Aknin, Françoise Mercier-Nomé, Martin Davy, Isabelle Raymond‐Letron, Thi Nhu Ngoc Van, Sarah D. Diermeier, Anastasia Godefroy, Magali Gary‐Bobo, Franck Molina, Karl Balabanian, Gwendal Lazennec
Software Mentions: 1
Published: over 5 years ago

10.1186/s12906-019-2558-9

Antimicrobial characteristics of Berberine against prosthetic joint infection-related Staphylococcus aureus of different multi-locus sequence types
Cited by: 27
Author(s): Jiaqi Tan, Jin Wang, Chuang Yang, Chongzun Zhu, Geyong Guo, Jin Tang, Hao Shen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-81866-5

Vertical sleeve gastrectomy induces distinctive transcriptomic responses in liver, fat and muscle
Cited by: 7
Author(s): Chang Ho Ahn, Eun Hye Choi, Hyunjung Lee, Woochan Lee, Jong‐Il Kim, Young Min Cho
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21124222

Pleiotropic Functions of FoxN1: Regulating Different Target Genes during Embryogenesis and Nymph Molting in the Brown Planthopper
Cited by: 1
Author(s): Yuxuan Ye, Chuan‐Xi Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12113184

Modulation of Immune Infiltration of Ovarian Cancer Tumor Microenvironment by Specific Subpopulations of Fibroblasts
Cited by: 11
Author(s): Ji Wang, Frank Hsueh-Che Cheng, Jessica Tedrow, Wennan Chang, Chi Zhang, Anirban Mitra
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21134615

Integrated RNA-seq Analysis and Meta-QTLs Mapping Provide Insights into Cold Stress Response in Rice Seedling Roots
Cited by: 18
Author(s): Weilong Kong, Chenhao Zhang, Yalin Qiang, Hua Zhong, Gangqing Zhao, Yangsheng Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-018-4621-1

Comprehensive transcriptomic analysis of heat shock proteins in the molecular subtypes of human breast cancer
Cited by: 36
Author(s): Felipe Carlos Martín Zoppino, Martin E. Guerrero-Gimenez, Gisela N. Castro, Daniel R. Ciocca
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-82057-y

A risk progression breast epithelial 3D culture model reveals Cx43/hsa_circ_0077755/miR-182 as a biomarker axis for heightened risk of breast cancer initiation
Cited by: 4
Author(s): Nataly Naser Al Deen, Nadia A. Lanman, Shirisha Chittiboyina, Sophie A. Lelièvre, Rihab Nasr, Farah Nassar, Heinrich zu Dohna, Mounir G. AbouHaidar, Rabih Talhouk
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11050714

Targeting the Interplay between Epithelial-to-Mesenchymal-Transition and the Immune System for Effective Immunotherapy
Cited by: 75
Author(s): Rama Soundararajan, Jared J. Fradette, Jessica Konen, Stacy L. Moulder, Xiang Zhang, Don L. Gibbons, Navin Varadarajan, Ignacio I. Wistuba, Debasish Tripathy, Chantale Bernatchez, Lauren A. Byers, Jeffrey T. Chang, Alejandro Contreras, Bora Lim, Edwin R. Parra, Emily Roarty, Jing Wang, Fei Yang, Michelle C. Barton, Jeffrey M. Rosen, Sendurai A. Mani
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-021-08176-x

Immunological effect of irreversible electroporation on hepatocellular carcinoma
Cited by: 12
Author(s): Xiaoxia Guo, Fukuan Du, Qin Liu, Yan Guo, Qingbing Wang, Wei Huang, Zhongmin Wang, Xiaoyi Ding, Zhiyuan Wu
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13122937

Higher Integrin Alpha 3 Beta1 Expression in Papillary Thyroid Cancer Is Associated with Worst Outcome
Cited by: 8
Author(s): Lorenza Mautone, Carlo Ferravante, Anna Tortora, Roberta Tarallo, Giorgio Giurato, Alessandro Weisz, Mario Vitale
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12010033

CREPT Promotes Melanoma Progression Through Accelerated Proliferation and Enhanced Migration by RhoA-Mediated Actin Filaments and Focal Adhesion Formation
Cited by: 8
Author(s): Hui Liu, Ann L.B. Seynhaeve, Rutger W. W. Brouwer, Wilfred F. J. van IJcken, Yang Liu, Yinyin Wang, Zhijie Chen, Timo L.M. ten Hagen
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers13143519

HGF/MET Axis Induces Tumor Secretion of Tenascin-C and Promotes Stromal Rewiring in Pancreatic Cancer
Cited by: 8
Author(s): Chiara Modica, Martina Olivero, Francesca Zuppini, Melissa Milan, Cristina Basilico, Elisa Vigna
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11122025

Discovering Rare Genes Contributing to Cancer Stemness and Invasive Potential by GBM Single-Cell Transcriptional Analysis
Cited by: 7
Author(s): Lin Pang, Jing Hu, Feng Li, Huating Yuan, Min Yan, Gaoming Liao, Liwen Xu, Bo Pang, Yanyan Ping, Yun Xiao, Xia Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-019-5571-y

The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue
Cited by: 53
Author(s): Caspar Bundgaard‐Nielsen, Ulrik Baandrup, Lars Peter Nielsen, Susanne Sørensen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-82706-2

MEF2C shapes the microtranscriptome during differentiation of skeletal muscles
Cited by: 13
Author(s): Agnieszka Piasecka, Michał Sekrecki, Michał Wojciech Szcześniak, Krzysztof Sobczak
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11111651

Identification of SERPINE1 as a Regulator of Glioblastoma Cell Dispersal with Transcriptome Profiling
Cited by: 39
Author(s): Fidan Seker, Ahmet Cingöz, İlknur Sur-Erdem, Nazlı Ergüder, Mahmut Alp Erkent, Fırat Uyulur, Myvizhi Esai Selvan, Zeynep H. Gümüş, Mehmet Gönen, Halil Bayraktar, Hiroaki Wakimoto, Tugba Bagcı-Önder
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-75432-8

Gene expression and epigenetics reveal species-specific mechanisms acting upon common molecular pathways in the evolution of task division in bees
Cited by: 9
Author(s): Natália de Souza Araujo, Maria Cristina Arias
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-020-6600-6

Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes
Cited by: 15
Author(s): Karel Kalecky, Rebecca Modisette, Samantha Pena, Young-Rae Cho, Joseph H. Taube
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/2503924

Transcriptome Analysis and Emerging Driver Identification of CD8+ T Cells in Patients with Vitiligo
Cited by: 7
Author(s): Qiancheng Deng, Jingchao Wei, Puyu Zou, Yangfan Xiao, Zhuotong Zeng, Yaqian Shi, Yi Zhan, Huiming Zhang, Boyu Tang, Qinghai Zeng, Rong Xiao
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21144823

Distal-Less Homeobox 5 Is a Therapeutic Target for Attenuating Hypertrophy and Apoptosis of Mesenchymal Progenitor Cells
Cited by: 6
Author(s): John Twomey‐Kozak, Salomi Desai, Wenguang Liu, Neill Y. Li, Nicholas J. Lemme, Qian Chen, Brett D. Owens, Chathuraka T. Jayasuriya
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-020-07343-w

ANGPTL4 overexpression inhibits tumor cell adhesion and migration and predicts favorable prognosis of triple-negative breast cancer
Cited by: 18
Author(s): Yuchen Cai, Hang Yang, Kefeng Wang, Tan-Huan Chen, Wenqi Jiang, Yanxia Shi
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers12092418

Tumor Infiltrating Lymphocytes Signature as a New Pan-Cancer Predictive Biomarker of Anti PD-1/PD-L1 Efficacy
Cited by: 16
Author(s): Elise Ballot, Sylvain Ladoire, Bertrand Routy, Caroline Truntzer, François Ghiringhelli
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers13164117

Algorithmically Deduced FREM2 Molecular Pathway Is a Potent Grade and Survival Biomarker of Human Gliomas
Cited by: 9
Author(s): Marianna Zolotovskaia, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Ella Kim, Sven R. Kantelhardt, Sven-Ernö Bikar, Alja Zottel, Neja Šamec, Denis Kuzmin, Bettina Sprang, Alexey Moisseev, Alf Giese, Victor Efimov, Ivana Jovčevska, Anton Buzdin
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21145076

Expression Profiling and Functional Characterization of miR-26a and miR-130a in Regulating Zhongwei Goat Hair Development via the TGF-β/SMAD Pathway
Cited by: 9
Author(s): Yangyang Ding, Xianglan Xue, Zhanfa Liu, Yong Ye, Ping Xiao, Yong‐Jin Pu, Weijun Guan, Joram M. Mwacharo, Yuehui Ma, Qianjun Zhao
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103539

The circular RNA circEIF3M promotes breast cancer progression by promoting cyclin D1 expression
Cited by: 12
Author(s): Xiujuan Li, Zhao-Jun Ren, Yufeng Yao, Jun Bao, Qiao Ye
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21155284

Shade Effects on Peanut Yield Associate with Physiological and Expressional Regulation on Photosynthesis and Sucrose Metabolism
Cited by: 18
Author(s): Tingting Chen, Huajian Zhang, Ruier Zeng, Xinyue Wang, Lüping Huang, Leidi Wang, Xuewen Wang, Lei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-83267-0

Genome-wide transcriptome reveals mechanisms underlying Rlm1-mediated blackleg resistance on canola
Cited by: 3
Author(s): Chun Zhai, Xunjia Liu, Tao Song, Fengqun Yu, Gary Peng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-018-4440-4

Chronophin regulates active vitamin B6 levels and transcriptomic features of glioblastoma cell lines cultured under non-adherent, serum-free conditions
Cited by: 7
Author(s): Markus Schulze, Maria Hutterer, Anja Sabo, S Hoja, Julia Lorenz, Tanja Rothhammer-Hampl, Christel Herold‐Mende, Lucia Floßbach, Camelia Monoranu, Markus J. Riemenschneider
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-017-3233-5

Aberrant expression of ALK and EZH2 in Merkel cell carcinoma
Cited by: 20
Author(s): Tuukka Veija, Virve Koljonen, Tom Böhling, Mia Kero, Sakari Knuutila, Virinder Sarhadi
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/7370157

Elevated Glutathione Peroxidase 2 Expression Promotes Cisplatin Resistance in Lung Adenocarcinoma
Cited by: 29
Author(s): Du He, Chen Bi, Nanlin Jiao, Yanhua Liu, Shuai Sun, Youwei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0177932

Zebrafish exposure to environmentally relevant concentration of depleted uranium impairs progeny development at the molecular and histological levels
Cited by: 23
Author(s): Olivier Armant, Kewin Gombeau, Sophia Murat El Houdigui, Magali Floriani, Virginie Camilleri, Isabelle Cavalié, Christelle Adam-Guillermin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0125912

MicroRNA Expression Profile in Bovine Granulosa Cells of Preovulatory Dominant and Subordinate Follicles during the Late Follicular Phase of the Estrous Cycle
Cited by: 81
Author(s): Samuel Gebremedhn, Dessie Salilew‐Wondim, Ijaz Ahmad, Sudeep Sahadevan, Munir Hossain, M. Hoelker, F. Rings, Christiane Neuhoff, Ernst Tholen, Christian Looft, K. Schellander, Dawit Tesfaye
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186469

Novel insights into the pathways regulating the canine hair cycle and their deregulation in alopecia X
Cited by: 19
Author(s): Magdalena A. T. Brunner, Vidhya Jagannathan, Dominik P. Waluk, Petra Roosje, Моника Линек, Lucia Panakova, Tosso Leeb, Dominique J Wiener, Monika Maria Welle
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0252221

Midgut transcriptome assessment of the cockroach-hunting wasp Ampulex compressa (Apoidea: Ampulicidae)
Cited by: 1
Author(s): Jovana M. Jasso‐Martínez, Alexander Donath, Dieter Schulten, Alejandro Zaldívar‐Riverón, Manuela Sann
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0131650

Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs
Cited by: 46
Author(s): Caroline M. Junker Mentzel, Christian Anthon, Mette Juul Jacobsen, Peter Karlskov-Mortensen, Camilla S. Bruun, Claus B. Jørgensen, Jan Gorodkin, Susanna Cirera, Merete Fredholm
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0217497

Transcriptome profiling in Rift Valley fever virus infected cells reveals modified transcriptional and alternative splicing programs
Cited by: 18
Author(s): Katherine E. Havranek, Luke Adam White, Jean-Marc Lanchy, J. Stephen Lodmell
Software Mentions: 1
Published: over 7 years ago

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Papers Mentioning DESeq2 9,583