bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-44568-7

Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs
Cited by: 6
Author(s): Konrad Ocalewicz, Artur Gurgul, Klaudia Pawlina-Tyszko, Tomasz Szmatoła, Igor Jasielczuk, Monika Bugno‐Poniewierska, Stefan Dobosz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43985-y

Ampk regulates IgD expression but not energy stress with B cell activation
Cited by: 13
Author(s): Lynnea R. Waters, Fasih M. Ahsan, Johanna ten Hoeve, Jason Hong, Diane N. H. Kim, Aspram Minasyan, Daniel Braas, Thomas G. Graeber, Thomas A. Zangle, Michael A. Teitell
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1008596

Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types
Cited by: 13
Author(s): Ke Chen, Amitesh Anand, Connor A. Olson, Troy E. Sandberg, Ye Gao, Nathan Mih, Jaehyung Kim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13045-018-0650-0

The CCR4-NOT complex is a tumor suppressor in Drosophila melanogaster eye cancer models
Cited by: 15
Author(s): Carmen Vicente, Rocco Stirparo, Sofie Demeyer, Charles E. de Bock, Olga Gielen, Mardelle Atkins, Jiekun Yan, Georg Halder, Bassem A. Hassan, Jan Cools
Software Mentions: 1
Published: about 8 years ago

10.1186/s13045-018-0670-9

Molecular profiling of hormone receptor-positive, HER2-negative breast cancers from patients treated with neoadjuvant endocrine therapy in the CARMINA 02 trial (UCBG-0609)
Cited by: 17
Author(s): Liang Xu, Adrien Briaux, Véronique Becette, Camille Benoist, Anaïs Boulai, Walid Chemlali, Anne Schnitzler, Sylvain Baulande, Sofía Rivera, Marie-Ange Mouret-Reynier, Laurence Venat-Bouvet, T. de La Motte Rouge, Jérôme Lemonnier, Florence Lerebours, Céline Callens
Software Mentions: 1
Published: about 8 years ago

10.1186/s13045-019-0749-y

Functional diversity of inhibitors tackling the differentiation blockage of MLL-rearranged leukemia
Cited by: 20
Author(s): Krzysztof Brzezinka, Ekaterina Nevedomskaya, Ralf Lesche, Michael Steckel, Ashley Eheim, Andrea Haegebarth, Carlo Stresemann
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11020122

Identification of ADPKD-Related Genes and Pathways in Cells Overexpressing PKD2
Cited by: 4
Author(s): Zhe Zhang, Yanna Dang, Zizengceng Wang, Huanan Wang, Yuchun Pan, Jin He
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13045-019-0765-y

Nuclear factor of activated T-cells, NFATC1, governs FLT3ITD-driven hematopoietic stem cell transformation and a poor prognosis in AML
Cited by: 10
Author(s): Maria Solovey, Ying Wang, Christian Michel, Klaus H. Metzeler, Tobias Herold, Joachim R Göthert, Volker Ellenrieder, Stefan Gattenlöhner, Andreas Neubauer, Dinko Pavlinic, Vladimı́r Beneš, Oliver Rupp, Andreas Burchert
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1009821

RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics
Cited by: 14
Author(s): Donghui Choe, Richard Szubin, Saugat Poudel, Anand V. Sastry, Yoseb Song, Yong Jae Lee, Suhyung Cho, Jaehyung Kim, Byung-Kwan Cho
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-45451-1

In-depth analysis of swim bladder-associated microbiota in rainbow trout (Oncorhynchus mykiss)
Cited by: 14
Author(s): Alejandro Villasante, C. Ramı́rez, Héctor Rodríguez, Natalia Catalán, Osmán Díaz, Rodrigo Rojas, Rafael Opazo, Jaime Romero
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11020229

Ubiquitin E3 Ligase AaBre1 Responsible for H2B Monoubiquitination Is Involved in Hyphal Growth, Conidiation and Pathogenicity in Alternaria alternata
Cited by: 2
Author(s): Ye Liu, Jingjing Xin, Lina Liu, Aiping Song, Yuan Liao, Zhiyong Guan, Weimin Fang, Fadi Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020228

Comparative Transcriptome Analysis Reveals Stem Secondary Growth of Grafted Rosa rugosa ‘Rosea’ Scion and R. multiflora ‘Innermis’ Rootstock
Cited by: 5
Author(s): Jie Sun, Ruiyang Hu, Fuling Lv, Yongqiang Yang, Zhimin Tang, Guangshun Zheng, Jianbo Li, Hua Tian, Yan Xu, Shaofeng Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-45047-9

Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture
Cited by: 71
Author(s): Mariana A. Branco, João P. Cotovio, Carlos Alberto Chirano Rodrigues, Sandra H. Vaz, Tiago G. Fernandes, Leonilde M. Moreira, Joaquim M. S. Cabral, Maria Margarida Diogo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0212462

Stress response to CO2 deprivation by Arabidopsis thaliana in plant cultures
Cited by: 12
Author(s): Souvik Banerjee, Oskar Siemianowski, Meiling Liu, Kara R. Lind, X. C. Tian, Dan Nettleton, Ludovico Cademartiri
Software Mentions: 1
Published: over 7 years ago

10.1093/database/baw030

Genic insights from integrated human proteomics in GeneCards
Cited by: 114
Author(s): Simon Fishilevich, Shahar Zimmerman, Asher Kohn, Tsippi Iny Stein, Tsviya Olender, Eugene Kolker, Marilyn Safran, Doron Lancet
Software Mentions: 1
Published: almost 11 years ago

10.3390/genes11020177

Transcriptomic and Metabolomic Changes Triggered by Fusarium solani in Common Bean (Phaseolus vulgaris L.)
Cited by: 22
Author(s): Limin Chen, Quancong Wu, Tianjun He, Jianjun Liu, Ding Li, Liu Ting-fu, Qianqian Wu, Yiming Pan, Tingting Chen
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes10121035

Comparative Transcriptome Analysis of Gonads for the Identification of Sex-Related Genes in Giant Freshwater Prawns (Macrobrachium Rosenbergii) Using RNA Sequencing
Cited by: 21
Author(s): Jianping Jiang, Xiang Yuan, Qiu Qingqing, Guanghua Huang, Qinyang Jiang, Penghui Fu, Yu Zhang, Yinhai Jia, Xiurong Yang, Hesheng Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-46143-6

Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms
Cited by: 31
Author(s): Ross T. Slater, Lucy R. Frost, Sian Jossi, Andrew Millard, Meera Unnikrishnan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0199083

Role of the tomato TAGL1 gene in regulating fruit metabolites elucidated using RNA sequence and metabolomics analyses
Cited by: 13
Author(s): Xiaodan Zhao, Xinyu Yuan, Sha Chen, Lanhuan Meng, Daqi Fu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1009543

Multi-omics approach identifies germline regulatory variants associated with hematopoietic malignancies in retriever dog breeds
Cited by: 9
Author(s): Judith Evans, Heidi G. Parker, Gerard R. Rutteman, Jocelyn Plassais, Guy C. M. Grinwis, Alex C. Harris, Susan E. Lana, Elaine A. Ostrander
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46841-1

Changes in nuclear and cytoplasmic microRNA distribution in response to hypoxic stress
Cited by: 53
Author(s): Tiia A. Turunen, Thomas C. Roberts, Pia Laitinen, Mari-Anna Väänänen, Paula Korhonen, Tarja Malm, Seppo Ylä‐Herttuala, Mikko P. Turunen
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22136994

Integrated Analysis of miR-430 on Steroidogenesis-Related Gene Expression of Larval Rice Field Eel Monopterus albus
Cited by: 4
Author(s): Li-Han Zhang, Qiong Yang, Weigang Xu, Zeyan Wu, Dapeng Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46966-3

Transcriptome analysis identifies a robust gene expression program in the mouse intestinal epithelium on aging
Cited by: 9
Author(s): Juri Kazakevych, Elena Stoyanova, Anke Liebert, Patrick Varga‐Weisz
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10121034

Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.
Cited by: 3
Author(s): Yaru Fu, Tianyu Dong, Tan Li-zhi, Danni Yin, Miaomiao Zhang, Guomiao Zhao, Meixia Ye, Rongling Wu
Software Mentions: 1
Published: almost 7 years ago

10.3390/biom10091296

Autophagy Inhibits Grass Carp Reovirus (GCRV) Replication and Protects Ctenopharyngodon idella Kidney (CIK) Cells from Excessive Inflammatory Responses after GCRV Infection
Cited by: 18
Author(s): Pengfei Chu, Libo He, Rong Huang, Lanjie Liao, Yongming Li, Zhu Zhang, Wei Hu, Yaping Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/genes10120951

Transcriptome Analysis and Identification of Insecticide Tolerance-Related Genes after Exposure to Insecticide in Sitobion avenae
Cited by: 19
Author(s): Ning Wei, Yongzhi Zhong, Lulu Lin, Minghui Xie, Guangling Zhang, Weihua Su, Chuanren Li, Haoliang Chen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-47444-6

Functionalization of Brain Region-specific Spheroids with Isogenic Microglia-like Cells
Cited by: 112
Author(s): Liqing Song, Xuegang Yuan, Zachary Jones, Cynthia Vied, Miao Yu, Mark Marzano, Thien Hua, Qing‐Xiang Amy Sang, Jingjiao Guan, Teng Ma, Yi Zhou, Yan Li
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10110929

Genomic Variance and Transcriptional Comparisons Reveal the Mechanisms of Leaf Color Affecting Palatability and Stressed Defense in Tea Plant
Cited by: 11
Author(s): Xuewen Wang, Benying Liu, Qingshi Zhao, Xuemei Sun, Youyong Li, Duan ZhiFen, Xinli Miao, Shan Luo, Jianbin Li
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-47737-w

The TM6SF2 E167K genetic variant induces lipid biosynthesis and reduces apolipoprotein B secretion in human hepatic 3D spheroids
Cited by: 73
Author(s): Sebastian Prill, Andrea Caddeo, Guido Baselli, Oveis Jamialahmadi, Paola Dongiovanni, Raffaela Rametta, Kajsa P. Kanebratt, Arturo Pujia, Piero Pingitore, Rosellina Margherita Mancina, Daniel Lindén, Carl Whatling, Annika Janefeldt, Mikael Kozyra, Magnus Ingelman‐Sundberg, Luca Valenti, Tommy Andersson, Stefano Romeo
Software Mentions: 1
Published: over 7 years ago

10.1042/BSR20191028

miR-484 is associated with disease recurrence and promotes migration in prostate cancer
Cited by: 10
Author(s): Daniel Lee, Wei Tang, Tiffany H. Dorsey, Stefan Ambs
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10100821

Non-Coding RNA Sequencing of Equine Endometrium During Maternal Recognition of Pregnancy
Cited by: 7
Author(s): K.M. Klohonatz, Stephen J. Coleman, Ashley D. Cameron, Ann Hess, Kailee J. Reed, Ángela Cánovas, Juan F. Medrano, Alma Islas–Trejo, Theodore S. Kalbfleisch, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: about 7 years ago

10.1016/j.xcrm.2021.100206

Effects of Lactobacillus reuteri supplementation on the gut microbiota in extremely preterm infants in a randomized placebo-controlled trial
Cited by: 28
Author(s): Magalí Martí, Johanne E. Spreckels, Purnika Damindi Ranasinghe, Erik Wejryd, Giovanna Marchini, Eva Sverremark-Ekström, Maria C. Jenmalm, Thomas Abrahamsson
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10100749

Coding RNA Sequencing of Equine Endometrium during Maternal Recognition of Pregnancy
Cited by: 12
Author(s): K.M. Klohonatz, Stephen J. Coleman, Alma Islas–Trejo, Juan F. Medrano, Ann Hess, Theodore S. Kalbfleisch, M. G. Thomas, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48991-8

Blocked O-GlcNAc cycling disrupts mouse hematopoeitic stem cell maintenance and early T cell development
Cited by: 26
Author(s): Lara K. Abramowitz, Christelle Harly, Arundhoti Das, Avinash Bhandoola, John A. Hanover
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48768-z

Microbiomic differences at cancer-prone oral mucosa sites with marijuana usage
Cited by: 10
Author(s): Taylor Newman, Laya P. Krishnan, Jessica Lee, Guy R. Adami
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10100824

Implications of Gene Inheritance Patterns on the Heterosis of Abdominal Fat Deposition in Chickens
Cited by: 13
Author(s): Chunning Mai, Chaoliang Wen, Chang Sun, Zhi‐Yuan Xu, Sirui Chen, Ning Yang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10090712

The Pituitary Transcriptional Response Related to Feed Conversion in Pigs
Cited by: 6
Author(s): Katarzyna Piórkowska, Kacper Żukowski, M. Tyra, Magdalena Szyndler-Nędza, K. Szulc, E. Skrzypczak, Katarzyna Ropka‐Molik
Software Mentions: 1
Published: about 7 years ago

10.1016/j.xcrm.2021.100239

Transcriptional firing represses bactericidal activity in cystic fibrosis airway neutrophils
Cited by: 21
Author(s): Camilla Margaroli, Diego Moncada Giraldo, Dalia Gulick, Brian Dobosh, Vincent D. Giacalone, Osric Forrest, Fangxu Sun, C.D. Gu, Amit Gaggar, Haydn Kissick, Ronghu Wu, Greg Gibson, Rabindra Tirouvanziam
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10080601

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Cited by: 30
Author(s): Johanna Nelkner, Gonzalo Arturo Torres Tejerizo, Julia Hassa, Timo Wentong Lin, J. Witte, Bart Verwaaijen, Anderson M. Winkler, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Rita Grosch, Alfred Pühler, Andreas Schlüter
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-69242-1

Nephronectin promotes breast cancer brain metastatic colonization via its integrin-binding domains
Cited by: 11
Author(s): Synnøve Magnussen, Jimita Prashant Toraskar, Imola Wilhelm, János Haskó, Stine Figenschau, J. Molnár, Marit Seppola, Sonja Eriksson Steigen, Tonje S. Steigedal, Elin Hadler‐Olsen, István A. Krizbai, Gunbjørg Svineng
Software Mentions: 1
Published: over 6 years ago

10.3390/biomedicines9080949

Evaluation of β-Catenin Inhibition of Axitinib and Nitazoxanide in Human Monocyte-Derived Dendritic Cells
Cited by: 1
Author(s): Waqas Azeem, Ragnhild Maukon Bakke, Benjamin Gabriel, Silke Appel, Anne Margrete Øyan, Karl‐Henning Kalland
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-019-3661-y

A differential transcriptional profile by Culex quinquefasciatus larvae resistant to Lysinibacillus sphaericus IAB59 highlights genes and pathways associated with the resistance phenotype
Cited by: 11
Author(s): Tatiana Maria Teodoro Rezende, Antônio Mauro Rezende, Gabriel Luz Wallau, Crhisllane Rafaele Santos Vasconcelos, Osvaldo P. de Melo Neto, Maria Helena Neves Lobo Silva-Filha, Tatiany Patrícia Romão
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0230266

Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins
Cited by: 35
Author(s): Mihika T. Kozma, Hanh Ngo-Vu, YW Wong, Neal S. Shukla, Shrikant Pawar, Adriano Senatore, Manfred Schmidt, Charles D. Derby
Software Mentions: 1
Published: over 6 years ago

10.3390/biom11040525

Sphingosine Promotes Embryo Biomass in Upland Cotton: A Biochemical and Transcriptomic Analysis
Cited by: 3
Author(s): Li Wang, Xiaodong Suo, Yujie Liu, Chen Liu, Ming Luo
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10060465

Transcriptome Changes during Major Developmental Transitions Accompanied with Little Alteration of DNA Methylome in Two Pleurotus Species
Cited by: 8
Author(s): Jiawei Wen, Zhibin Zhang, Lei Gong, Hongwei Xun, Juzuo Li, Qiyu Bao, Qi Wang, Yongming Li, Li Yu, Liu B
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-68728-2

Necrotrophic lifestyle of Rhizoctonia solani AG3-PT during interaction with its host plant potato as revealed by transcriptome analysis
Cited by: 14
Author(s): Rita Zrenner, Franziska Genzel, Bart Verwaaijen, Daniel Wibberg, Rita Grosch
Software Mentions: 1
Published: over 6 years ago

10.1186/s12964-018-0234-1

High co-expression of the SDF1/CXCR4 axis in hepatocarcinoma cells is regulated by AnnexinA7 in vitro and in vivo
Cited by: 10
Author(s): Jingwen Wang, Yühong Huang, Jun Zhang, Boyi Xing, Wei Xuan, Honghai Wang, He Huang, Jiayu Yang, Jianwu Tang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-69355-7

Leprosy piRnome: exploring new possibilities for an old disease
Cited by: 7
Author(s): Pablo Pinto, Moisés Batista da Silva, Fabiano Cordeiro Moreira, Raquel Carvalho Bouth, Angélica Rita Gobbo, Tatiana Vinasco-Sandoval, André M. Ribeiro-dos-Santos, Amanda Ferreira Vidal, Josafá Gonçalves Barreto, Sidney Emanuel Batista dos Santos, John S. Spencer, Cláudio Guedes Salgado, Ândrea Ribeiro‐dos‐Santos
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1008732

The transcription and export complex THO/TREX contributes to transcription termination in plants
Cited by: 10
Author(s): Ghazanfar Abbas Khan, Jules Deforges, Rodrigo S. Reis, Yi-Fang Hsieh, Jonatan Montpetit, Wojciech Antosz, Luca Santuari, Christian S. Hardtke, Klaus D. Grasser, Yves Poirier
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-69729-x

Integrated transcriptomic and metabolomic analyses reveal the effects of callose deposition and multihormone signal transduction pathways on the tea plant-Colletotrichum camelliae interaction
Cited by: 12
Author(s): Qinhua Lu, Yuchun Wang, Fei Xiong, Xinyuan Hao, Xinzhong Zhang, Nana Li, Lu Wang, Jianming Zeng, Yajun Yang, Xinchao Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s13071-020-04460-0

Disruption of Plasmodium falciparum histidine-rich protein 2 may affect haem metabolism in the blood stage
Cited by: 5
Author(s): Yang Yingchao, Tongke Tang, Bo Feng, Shanshan Li, Nan Hou, Xiao Ma, Lubin Jiang, Xiaofang Xin, Qijun Chen
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.37382

Induction of human somatostatin and parvalbumin neurons by expressing a single transcription factor LIM homeobox 6
Cited by: 30
Author(s): Yuan Fang, Xin Chen, Kai-Heng Fang, Yuanyuan Wang, Mingyan Lin, Shi-Bo Xu, Hai-Qin Huo, Min Xu, Lixiang Ma, Yuejun Chen, Shuai He, Yan Liu
Software Mentions: 1
Published: about 8 years ago

10.3390/microorganisms8081246

Association of the Gut Microbiota with Weight-Loss Response within a Retail Weight-Management Program
Cited by: 20
Author(s): Samitinjaya Dhakal, Lacey McCormack, Moul Dey
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8121989

Impact of Mediterranean Diet on Disease Activity and Gut Microbiota Composition of Rheumatoid Arthritis Patients
Cited by: 34
Author(s): Andrea Picchianti-Diamanti, Concetta Panebianco, Gerardo Salerno, Roberta Rosa, Simonetta Salemi, Maria Laura Sorgi, Giorgia Meneguzzi, Maria Benedetta Mariani, Alessandra Rai, Dalila Iacono, Giorgio Sesti, Valerio Pazienza, Bruno Laganà
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom11050764

Lack of Conserved miRNA Deregulation in HPV-Induced Squamous Cell Carcinomas
Cited by: 5
Author(s): Jaroslav Nunvář, Lucie Pagáčová, Zuzana Vojtěchová, Nayara Azevedo, Jana Šmahelová, Martina Saláková, Ruth Tachezy
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10020111

Identification of Genes Involved in Low Temperature-Induced Senescence of Panicle Leaf in Litchi chinensis
Cited by: 2
Author(s): Congcong Wang, Hao Liu, Shanlin Yu, Houbin Chen, Fuchu Hu, Huiling Zhan, Xifen Pan, Yuhua Lao, Silin Zhong, Biyan Zhou
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes10020145

Dynamic Expression of Interferon Lambda Regulated Genes in Primary Fibroblasts and Immune Organs of the Chicken
Cited by: 10
Author(s): Arslan Mehboob, Xin Yang, Diwakar Santhakumar, Xingjian Liu, Xiaoyuan Hu, Muhammad Munir, Yinü Li, Zhifang Zhang
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes9120624

Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila ananassae
Cited by: 18
Author(s): Annabella Königer
Software Mentions: 1
Published: almost 8 years ago

10.1167/iovs.62.7.24

Small RNA Sequencing of Aqueous Humor and Plasma in Patients With Primary Open-Angle Glaucoma
Cited by: 12
Author(s): Wouter Hubens, Julian Krauskopf, Henny J. M. Beckers, Jos Kleinjans, Carroll A.B. Webers, Theo G. M. F. Gorgels
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph17051471

Remediation of Crude Oil-Polluted Soil by the Bacterial Rhizosphere Community of Suaeda Salsa Revealed by 16S rRNA Genes
Cited by: 26
Author(s): Yanhua Yu, Yinghua Zhang, Na Zhao, Jia Guo, W. Wang and X.Q. Xu, Meihu Ma, Xiaoxia Li
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph17155466

The Impact of the Deepwater Horizon Oil Spill upon Lung Health—Mouse Model-Based RNA-Seq Analyses
Cited by: 4
Author(s): Yaozhong Liu, Charles A. Miller, Yan Zhuang, Sudurika Mukhopadhyay, Shigeki Saito, Edward B. Overton, Gilbert F. Morris
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph18042174

Investigation of Nasal/Oropharyngeal Microbial Community of COVID-19 Patients by 16S rDNA Sequencing
Cited by: 52
Author(s): Martina Rueca, A. Fontana, Barbara Bartolini, Pierluca Piselli, Antonio Mazzarelli, Massimiliano Copetti, Elena Binda, Francesco Perri, Cesare Ernesto Maria Gruber, Emanuele Nicastri, Luisa Marchioni, Giuseppe Ippolito, Maria Rosaria Capobianchi, Antonino Di, Valerio Pazienza
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-70534-9

Discovery of small molecules that normalize the transcriptome and enhance cysteine cathepsin activity in progranulin-deficient microglia
Cited by: 11
Author(s): Maria Telpoukhovskaia, Kai Li, Faten A. Sayed, Jon Iker Etchegaray, Min Xie, Lihong Zhan, Yaqiao Li, Yungui Zhou, David Le, Ben A. Bahr, Matthew Bogyo, Sheng Ding, Li Gan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007090

Regulation of transcription elongation in response to osmostress
Cited by: 19
Author(s): Andréa Silva, Santiago Cavero, Victoria Begley, Carme Solé, René Böttcher, Sebastián Chávez, Francesc Posas, Eulàlia de Nadal
Software Mentions: 1
Published: almost 9 years ago

10.1093/jncics/pkz067

DNA Repair Biomarker for Lung Cancer Risk and its Correlation With Airway Cells Gene Expression
Cited by: 10
Author(s): Tamar Paz-Elizur, Yael Leitner‐Dagan, Kerstin B. Meyer, Barak Markus, Federico M. Giorgi, Martin O’Reilly, Hyun‐Jin Kim, Yentl Evgy, Ronen Fluss, Laurence S. Freedman, Robert C. Rintoul, Bruce A.J. Ponder, Zvi Livneh
Software Mentions: 1
Published: about 7 years ago

10.3390/genes9120627

A-to-I RNA Editing Affects lncRNAs Expression after Heat Shock
Cited by: 4
Author(s): Roni Haas, Nabeel S. Ganem, Ayya Keshet, Angela Orlov, Ayelet Fishman, Ayelet T. Lamm
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-70882-6

Molecular insights into biochar-mediated plant growth promotion and systemic resistance in tomato against Fusarium crown and root rot disease
Cited by: 55
Author(s): Amit K. Jaiswal, Noam Alkan, Y. Elad, Noa Sela, Amit Mary Philosoph, Ellen R. Graber, Omer Frenkel
Software Mentions: 1
Published: about 6 years ago

10.1186/s40662-020-00221-3

The critical role of m6A methylation in the pathogenesis of Graves' ophthalmopathy
Cited by: 13
Author(s): Liangru Zhu, Siyan Li, Shikun He, Qizhe Tong, Lejin Wang, Xiaohua Li, Xi Wu, Qingyu Meng, Enzhong Jin, Chuan Zhang, Tianyuan Li, Ningda Xu, Lvzhen Huang, Yi Wang, Mingwei Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-70865-7

Hypoxic gene expression in chronic hepatitis B virus infected patients is not observed in state-of-the-art in vitro and mouse infection models
Cited by: 11
Author(s): Peter Jianrui Liu, James Michael Harris, Emanuele Marchi, Valentina D’Arienzo, Thomas Michler, Peter AC Wing, Andrea Magrì, Ana Maria Ortega-Prieto, Maarten van de Klundert, Jochen M. Wettengel, David Durantel, Marcus Dorner, Paul Klenerman, Ulrike Protzer, Efstathios S. Giotis, Jane A. McKeating
Software Mentions: 1
Published: about 6 years ago

10.3390/biom11020281

Serum Acylcarnitines Associated with High Short-Term Mortality in Patients with Alcoholic Hepatitis
Cited by: 6
Author(s): Bei Gao, Josepmaría Argemi, R. Bataller, Bernd Schnabl
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-70190-z

Vitamin D ameliorates adipose browning in chronic kidney disease cachexia
Cited by: 16
Author(s): Wai W. Cheung, Wei Ding, Hal M. Hoffman, Zhen Wang, Hao Sheng, Ronghao Zheng, Alex Gonzalez, Junpeng Zhan, Ping Zhou, Shiping Li, Mary C. Esparza, Richard L. Lieber, Robert H. Mak
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71131-6

Improved locomotor recovery after contusive spinal cord injury in Bmal1−/− mice is associated with protection of the blood spinal cord barrier
Cited by: 17
Author(s): Łukasz P. Słomnicki, Scott A. Myers, Sujata Saraswat Ohri, Molly V. Parsh, Kariena R. Andres, Julia H. Chariker, Eric C. Rouchka, Michał Hetman
Software Mentions: 1
Published: about 6 years ago

10.3390/biomedicines9070719

miR-208b Reduces the Expression of Kcnj5 in a Cardiomyocyte Cell Line
Cited by: 4
Author(s): Julia Hupfeld, Maximilian Ernst, Maria Knyrim, Stephanie Binas, Udo Kloeckner, Sindy Rabe, Katja Quarch, Danny Misiak, Matthew Fuszard, Claudia Großmann, Michael Gekle, Barbara Schreier
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13163970

Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects
Cited by: 1
Author(s): Matthieu Meryet-Figuière, Mégane Vernon, Mamy Andrianteranagna, Bernard Lambert, Célia Brochen, Jean-Paul Issartel, Audrey Guttin, Pascal Gauduchon, Émilie Brotin, Florent Dingli, Damarys Loew, Nicolas Vigneron, Anaïs Wambecke, Edwige Abeilard, Emmanuel Barillot, Laurent Poulain, Loredana Martignetti, Christophe Denoyelle
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00672

Analysis of Dynamic Global Transcriptional Atlas Reveals Common Regulatory Networks of Hormones and Photosynthesis Across Nicotiana Varieties in Response to Long-Term Drought
Cited by: 13
Author(s): Jing Wang, Shihua Zhang, Yunpeng Fu, Tiantian He, Xuewen Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-71636-0

Transcriptional analysis of cleft palate in TGFβ3 mutant mice
Cited by: 4
Author(s): Jingpeng Liu, Sree Krishna Chanumolu, Kevin White, Mustafa Albahrani, Hasan H. Otu, Ali Nawshad
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2017.00370

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii
Cited by: 22
Author(s): Marina Puigvert, Rodrigo Guarischi-Sousa, Paola Zuluaga, Núria S. Coll, Alberto P. Macho, João Carlos Setúbal, Marc Valls
Software Mentions: 1
Published: over 9 years ago

10.1038/s41416-020-0765-2

5-Azacytidine inhaled dry powder formulation profoundly improves pharmacokinetics and efficacy for lung cancer therapy through genome reprogramming
Cited by: 11
Author(s): Philip J. Kuehl, Carmen S. Tellez, Marcie J. Grimes, Thomas H. March, Mathewos Tessema, David Revelli, Larry M. Mallis, Wendy W. Dye, Tyler Sniegowski, Aaron Badenoch, Michael C. Burke, Devon Dubose, David T. Vodak, Maria A. Picchi, Steven A. Belinsky
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-71910-1

Hemoglobin stimulates vigorous growth of Streptococcus pneumoniae and shapes the pathogen's global transcriptome
Cited by: 14
Author(s): Fahmina Akhter, Edroyal Womack, Jorge E. Vidal, Yoann Le Breton, Kevin S. McIver, Shrikant Pawar, Zehava Eichenbaum
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-72290-2

Attenuating hypoxia driven malignant behavior in glioblastoma with a novel hypoxia-inducible factor 2 alpha inhibitor
Cited by: 16
Author(s): Jaclyn J. Renfrow, M. Soike, James L. West, Shakti Ramkissoon, Linda J. Metheny-Barlow, Ryan T. Mott, Carol Kittel, Ralph B. D’Agostino, Stephen B. Tatter, Adrian W. Laxton, Mark B. Frenkel, Gregory A. Hawkins, Denise Herpai, Stephanie Sanders, Jann N. Sarkaria, Glenn J. Lesser, Waldemar Debinski, Roy Strowd
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2021.632788

Association Mapping and Transcriptome Analysis Reveal the Genetic Architecture of Maize Kernel Size
Cited by: 3
Author(s): Jian Ma, Lifeng Wang, Yongsong Cao, Hao Wang, Huiyong Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-72389-6

Correlated chromosomal periodicities according to the growth rate and gene expression
Cited by: 6
Author(s): Liu Liu, Masaomi Kurokawa, Motoki Nagai, Shigeto Seno, Bei‐Wen Ying
Software Mentions: 1
Published: about 6 years ago

10.1186/s40425-019-0728-4

Targeting interferon signaling and CTLA-4 enhance the therapeutic efficacy of anti-PD-1 immunotherapy in preclinical model of HPV+ oral cancer
Cited by: 46
Author(s): Stephanie Dorta‐Estremera, Venkatesh L. Hegde, Ravaen Slay, Rachel Sun, Ananta V. Yanamandra, Courtney Nicholas, Sita S. Nookala, Gloria Sierra, Michael A. Curran, K. Jagannadha Sastry
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.629089

Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.)
Cited by: 14
Author(s): Martina Kintlová, Jan Vrána, Roman Hobza, Nicolas Blavet, Vojtěch Hudzieczek
Software Mentions: 1
Published: over 5 years ago

10.1186/s40425-019-0745-3

Domatinostat favors the immunotherapy response by modulating the tumor immune microenvironment (TIME)
Cited by: 44
Author(s): Anne Catherine Bretz, Ulrike Parnitzke, Kerstin Kronthaler, Tobias Dreker, René Bartz, Frank Hermann, Astrid Ammendola, Tanja Wulff, Svetlana Hamm
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers11020164

MEK Inhibition Induces Canonical WNT Signaling through YAP in KRAS Mutated HCT-15 Cells, and a Cancer Preventive FOXO3/FOXM1 Ratio in Combination with TNKS Inhibition
Cited by: 9
Author(s): Nina Solberg, Maria Melheim, Martin Frank Strand, Petter Angell Olsen, Stefan Krauß
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-73075-3

SMRT sequencing of the full-length transcriptome of Odontotermes formosanus (Shiraki) under Serratia marcescens treatment
Cited by: 12
Author(s): Kai Feng, Xiaoyu Lu, Jian Luo, Fang Tang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-72161-w

Safety and functional enrichment of gut microbiome in healthy subjects consuming a multi-strain fermented milk product: a randomised controlled trial
Cited by: 15
Author(s): Anne‐Sophie Alvarez, Julien Tap, Isabelle Chambaud, Stéphanie Cools-Portier, Laurent Quinquis, P. Bourlioux, Philippe Marteau, Eric Guillemard, J. Schrezenmeir, Muriel Derrien
Software Mentions: 1
Published: about 6 years ago

10.1038/s12276-019-0352-x

Bach2 deficiency leads autoreactive B cells to produce IgG autoantibodies and induce lupus through a T cell-dependent extrafollicular pathway
Cited by: 44
Author(s): Eunkyeong Jang, Un Kyo Kim, Kiseok Jang, Young Soo Song, Ji Young, Hansol Yi, Jeehee Youn
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-72997-2

Comparative transcriptome analysis to identify candidate genes involved in 2-methoxy-1,4-naphthoquinone (MNQ) biosynthesis in Impatiens balsamina L.
Cited by: 7
Author(s): Lian Chee Foong, Jian Yi Chai, Anthony Siong Hock Ho, Brandon Pei Hui Yeo, Yang Mooi Lim, Sheh May Tam
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73170-5

Expression of fatty acid and triacylglycerol synthesis genes in interspecific hybrids of oil palm
Cited by: 3
Author(s): Ngoot‐Chin Ting, Katrina Sherbina, Jia-Shiun Khoo, Katialisa Kamaruddin, Pek-Lan Chan, Kuang‐Lim Chan, Mohd Amin Ab Halim, Kandha Sritharan, Zulkifli Yaakub, Sean Mayes, Festo Massawe, Peter L. Chang, Sergey V. Nuzhdin, Ravigadevi Sambanthamurthi, Rajinder Singh
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2017.01064

Unraveling the Transcriptional Basis of Temperature-Dependent Pinoxaden Resistance in Brachypodium hybridum
Cited by: 16
Author(s): Maor Matzrafi, Lidor Shaar-Moshe, Baruch Rubin, Zvi Peleg
Software Mentions: 1
Published: over 9 years ago

10.1186/s13068-021-02013-w

Oxidative stress tolerance contributes to heterologous protein production in Pichia pastoris
Cited by: 9
Author(s): Nai-Xin Lin, Rui He, Yan Xu, Xiao Yu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41416-018-0220-9

Prognostic and predictive role of CD8 and PD-L1 determination in lung tumor tissue of patients under anti-PD-1 therapy
Cited by: 118
Author(s): Jean-David Fumet, Corentin Richard, Fanny Ledys, Quentin Klopfenstein, Philippe Joubert, Bertrand Routy, Caroline Truntzer, Andréanne Gagné, Marc-André Hamel, Camila Figueiredo Guimaraes, B. Coudert, Laurent Arnould́, Laure Favier, Aurélie Lagrange, Sylvain Ladoire, Pierre Saintigny, Sandra Ortiz-Cuàran, Maurice Pérol, Pascal Foucher, Paul Hofman, Marius Ilié, Sandy Chevrier, Romain Boidot, Valentin Dérangère, François Ghiringhelli
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-73698-6

Acrylamide alters CREB and retinoic acid signalling pathways during differentiation of the human neuroblastoma SH-SY5Y cell line
Cited by: 21
Author(s): Kristina Attoff, Ylva Johansson, Andrea Cediel-Ulloa, Jessica Lundqvist, Rajinder K. Gupta, Florian Caiment, Anda R. Gliga, Anna Forsby
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2021.660226

Exogenous Gene Expression and Insect Resistance in Dual Bt Toxin Populus × euramericana ‘Neva’ Transgenic Plants
Cited by: 11
Author(s): Yachao Ren, Xinglu Zhou, Yan Dong, Jun Zhang, Jinmao Wang, Minsheng Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.01188

Plant Immune System Activation Upon Citrus Leprosis Virus C Infection Is Mimicked by the Ectopic Expression of the P61 Viral Protein
Cited by: 13
Author(s): Gabriella Dias Arena, Pedro Luis Ramos-González, Bryce W. Falk, Clare L. Casteel, Juliana Freitas-Astúa, Marcos Antônio Machado
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.00776

Identification of QTLs Containing Resistance Genes for Sclerotinia Stem Rot in Brassica napus Using Comparative Transcriptomic Studies
Cited by: 31
Author(s): Muhammad Uzair Qasim, Qing Zhao, Muhammad Shahid, Rana Abdul Samad, Sunny Ahmar, Jian Wu, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2019.01574

Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici
Cited by: 20
Author(s): Sowmya Ramachandran, Nicholas A. Mueth, Ping Zheng, Scot H. Hulbert
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40425-019-0643-8

Tumor regression mediated by oncogene withdrawal or erlotinib stimulates infiltration of inflammatory immune cells in EGFR mutant lung tumors
Cited by: 20
Author(s): Deborah Ayeni, Braden Miller, Alexandra Kuhlmann, Ping‐Chih Ho, Camila Robles-Oteiza, Mmaserame Gaefele, Stellar Levy, Fernando J. de Miguel, Curtis J. Perry, Tianxia Guan, Gerald Krystal, William W. Lockwood, Daniel Zelterman, Robert J. Homer, Zongzhi Liu, Susan M. Kaech, Katerina Politi
Software Mentions: 1
Published: over 7 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583