bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fcell.2020.621578

Identification of Key Histone Modifications and Their Regulatory Regions on Gene Expression Level Changes in Chronic Myelogenous Leukemia
Cited by: 6
Author(s): Lu-Qiang Zhang, Guoliang Fan, Jun-Jie Liu, Li Liu, Qian‐Zhong Li, Hao Lin
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.654397

The Scleraxis Transcription Factor Directly Regulates Multiple Distinct Molecular and Cellular Processes During Early Tendon Cell Differentiation
Cited by: 11
Author(s): Han Liu, Jingyue Xu, Yu Lan, Hee‐Woong Lim, Rulang Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-019-1462-2

Functional adaptations in the cecal and colonic metagenomes associated with the consumption of transglycosylated starch in a pig model
Cited by: 10
Author(s): Barbara U. Metzler‐Zebeli, Monica A. Newman, Dietmar Grüll, Qendrim Zebeli
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-019-5571-y

The presence of bacteria varies between colorectal adenocarcinomas, precursor lesions and non-malignant tissue
Cited by: 53
Author(s): Caspar Bundgaard‐Nielsen, Ulrik Baandrup, Lars Peter Nielsen, Susanne Sørensen
Software Mentions: 1
Published: over 7 years ago

10.1111/eva.12487

Transcriptional mechanisms underlying life-history responses to climate change in the three-spined stickleback
Cited by: 22
Author(s): Sin‐Yeon Kim, María M. Costa, Anna Esteve‐Codina, Alberto Velando
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2021.685261

Transcriptome Profiling of Mouse Corpus Callosum After Cerebral Hypoperfusion
Cited by: 3
Author(s): Hajime Takase, Gen Hamanaka, Ryo Ohtomo, Hidehiro Ishikawa, Kelly K. Chung, Emiri T. Mandeville, Josephine Lok, Myriam Fornage, Karl Herrup, Kai Hei Tse, Eng H. Lo, Ken Arai
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/6637513

Transcriptome Profiling of Human Follicle Dermal Papilla Cells in response to Porphyra-334 Treatment by RNA-Seq
Cited by: 6
Author(s): Su Yeon Kim, Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sung Joo Jang, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.567610

Impact of Sustained Transforming Growth Factor-β Receptor Inhibition on Chromatin Accessibility and Gene Expression in Cultured Human Endometrial MSC
Cited by: 15
Author(s): Raffaella Lucciola, Pavle Vrljicak, Shanti Gurung, Caitlin E. Filby, Saeedeh Darzi, Joanne Muter, Sascha Ott, Jan J. Brosens, Caroline E. Gargett
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2020.609090

Blockade of Macrophage CD147 Protects Against Foam Cell Formation in Atherosclerosis
Cited by: 3
Author(s): Jianjun Lv, Hao Wang, Hong‐Yong Cui, Ze-Kun Liu, Renyu Zhang, Ling Meng, Can Li, Yu‐Le Yong, Man Liu, Hai Zhang, Tianjiao Zhang, Kun Zhang, Gang Li, Gang Nan, Cong Zhang, Shuangping Guo, Ling Wang, Zhi‐Nan Chen, Huijie Bian
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/7182865

Sensitive Biomarker Analysis of Xue-Fu-Zhu-Yu Capsule for Patients with Qi Stagnation and Blood Stasis Pattern: A Nested Case-Control Study
Cited by: 1
Author(s): Guang Chen, Hong He, Kun Hu, Jialiang Gao, Jun Li, Mei Han, Jie Wang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-020-6600-6

Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes
Cited by: 15
Author(s): Karel Kalecky, Rebecca Modisette, Samantha Pena, Young-Rae Cho, Joseph H. Taube
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0008709

Mycolactone induces cell death by SETD1B-dependent degradation of glutathione
Cited by: 11
Author(s): Birgit Förster, Caroline Demangel, Thorsten Thye
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.622539

Human Wharton’s Jelly Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles Drive Oligodendroglial Maturation by Restraining MAPK/ERK and Notch Signaling Pathways
Cited by: 10
Author(s): Marianne Joerger-Messerli, Gierin Florence Thomi, Valérie Haesler, Irene Keller, Patricia Renz, Daniel Surbek, Andreina Schoeberlein
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/9920364

Synergistic Regulation of Microglia Gene Expression by Natural Molecules in Herbal Medicine
Cited by: 3
Author(s): Qiburi Qiburi, Temuqile Temuqile, Huricha Baigude
Software Mentions: 1
Published: about 5 years ago

10.1111/jfb.14649

Modulation of hepatic <scp>miRNA</scp> expression in Atlantic salmon ( <scp> Salmo salar </scp> ) by family background and dietary fatty acid composition
Cited by: 6
Author(s): Tone-Kari K Østbye, Nardos Tesfaye Woldemariam, Camilla Lundberg, Gerd Marit Berge, Bente Ruyter, Rune Andreassen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.563607

Cytomegalovirus Generates Assembly Compartment in the Early Phase of Infection by Perturbation of Host-Cell Factors Recruitment at the Early Endosome/Endosomal Recycling Compartment/Trans-Golgi Interface
Cited by: 12
Author(s): Pero Lučin, Natalia Jug Vučko, Ljerka Karleuša, Hana Mahmutefendić Lučin, Gordana Blagojević Zagorac, Berislav Lisnić, Valentino Pavišić, Marina Marcelić, Kristina Grabušić, Ilija Brizić, Silvija Lukanović Jurić
Software Mentions: 1
Published: about 6 years ago

10.1002/ijc.32058

Preclinical evaluation of the first intravenous small molecule MDM2 antagonist alone and in combination with temozolomide in neuroblastoma
Cited by: 22
Author(s): Lindi Chen, Fabio Pastorino, Philip Berry, Jennifer J. Bonner, Calum Kirk, Katrina Wood, Huw D. Thomas, Yan Zhao, Antonio Daga, Gareth J. Veal, John Lunec, David R. Newell, Mirco Ponzoni, Deborah A. Tweddle
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms7100436

Helicobacter pylori Stress-Response: Definition of the HrcA Regulon
Cited by: 11
Author(s): Davide Roncarati, Eva Pinatel, Elisabetta Fiore, Clelia Peano, Stefany Loibman, Vincenzo Scarlato
Software Mentions: 1
Published: about 7 years ago

10.3389/fcell.2021.661122

LECT 2 Antagonizes FOXM1 Signaling via Inhibiting MET to Retard PDAC Progression
Cited by: 2
Author(s): Xin Li, Pingping Lin, Ye Tao, Xin Jiang, Ting Li, Yunshan Wang, Chenjing Wang, Yu Cao
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-020-00942-5

Restoration of miR-193a expression is tumor-suppressive in MYC amplified Group 3 medulloblastoma
Cited by: 10
Author(s): Harish Shrikrishna Bharambe, Annada Anil Joshi, Kedar Yogi, Sadaf Kazi, Neelam Shirsat
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.619538

Conditional Loss of BAF (mSWI/SNF) Scaffolding Subunits Affects Specification and Proliferation of Oligodendrocyte Precursors in Developing Mouse Forebrain
Cited by: 5
Author(s): Eman Abbas, Mohamed A. Hassan, Godwin Sokpor, Kamila A. Kiszka, Linh Pham, Cemil Kerimoğlu, André Fischer, Huu Phuc Nguyen, Jochen F. Staiger, Tran Tuoc
Software Mentions: 1
Published: over 5 years ago

10.1002/ijc.31170

The arginine metabolome in acute lymphoblastic leukemia can be targeted by the pegylated-recombinant arginase I BCT-100
Cited by: 41
Author(s): Carmela De Santo, Sarah Booth, Ashley Vardon, Antony Cousins, Vanessa Tubb, Tracey Perry, Boris Noyvert, Andrew D Beggs, Margaret H.L. Ng, Christina Halsey, Pamela Kearns, Paul Cheng, Francis Mussai
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12885-020-07343-w

ANGPTL4 overexpression inhibits tumor cell adhesion and migration and predicts favorable prognosis of triple-negative breast cancer
Cited by: 18
Author(s): Yuchen Cai, Hang Yang, Kefeng Wang, Tan-Huan Chen, Wenqi Jiang, Yanxia Shi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0009320

Distinct transcriptional profiles of Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203 cultured at different temperatures
Cited by: 8
Author(s): Ellie J. Putz, Sathesh K Sivasankaran, Luis G. V. Fernandes, Brian W. Brunelle, John D. Lippolis, David P. Alt, Darrell O. Bayles, Richard L. Hornsby, Jarlath E. Nally
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6052461

Morphological and Transcriptome Analyses Provide Insights into Growth Inhibition of Trichophyton rubrum Caused by Laser Irradiation
Cited by: 2
Author(s): Ruina Zhang, Zhao Jun, Lin-Feng Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.720858

A Model of Waardenburg Syndrome Using Patient-Derived iPSCs With a SOX10 Mutation Displays Compromised Maturation and Function of the Neural Crest That Involves Inner Ear Development
Cited by: 8
Author(s): Jie Wen, Jian Song, Yijiang Bai, Yalan Liu, Xinzhang Cai, Lingyun Mei, Lu Ma, Chufeng He, Yong Feng
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.672406

Stepwise Induction of Inner Ear Hair Cells From Mouse Embryonic Fibroblasts via Mesenchymal- to-Epithelial Transition and Formation of Otic Epithelial Cells
Cited by: 2
Author(s): Qiong Yang, Haibo Shi, Yizhou Quan, Qianqian Chen, Wang Li, Li Wang, Yonghui Wang, Zhongzhong Ji, Shankai Yin, Huiming Xu, Wei‐Qiang Gao
Software Mentions: 1
Published: over 5 years ago

10.1002/eji.201746960

Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3+ regulatory T cells
Cited by: 12
Author(s): Mária Pásztói, Joern Pezoldt, Michael Beckstette, Christoph Lipps, Dagmar Wirth, Manfred Rohde, Krisztina Pálóczi, Edit I. Buzás, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.3389/fcell.2020.571677

Epidermal Growth Factor Is Essential for the Maintenance of Novel Prostate Epithelial Cells Isolated From Patient-Derived Organoids
Cited by: 12
Author(s): Katia Cheaito, Hisham F. Bahmad, Hiba A. Jalloul, Ola Hadadeh, Hiba Msheik, Albert El Hajj, Deborah Mukherji, Mohamed Al-Sayegh, Wassim Abou-Kheir
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms22136994

Integrated Analysis of miR-430 on Steroidogenesis-Related Gene Expression of Larval Rice Field Eel Monopterus albus
Cited by: 4
Author(s): Li-Han Zhang, Qiong Yang, Weigang Xu, Zeyan Wu, Dapeng Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.695007

Aberrant Expression of Circulating MicroRNA Leads to the Dysregulation of Alpha-Synuclein and Other Pathogenic Genes in Parkinson’s Disease
Cited by: 15
Author(s): Meng Cai, Songshan Chai, Tao Xiong, Jun Wei, Weibing Mao, Yasha Zhu, Xiang Li, Wei Wei, Xuan Dai, Bangkun Yang, Wen Li, Bing Shu, Mengyang Wang, Taojunjin Lu, Yuankun Cai, Zhixin Zheng, Zhimin Mei, Yixuan Zhou, Jingyi Yang, J. W. Zhao, Lei Shen, Joshua W. K. Ho, Jincao Chen, Nanxiang Xiong
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.623738

TULP2, a New RNA-Binding Protein, Is Required for Mouse Spermatid Differentiation and Male Fertility
Cited by: 10
Author(s): Meimei Zheng, Chen Xu, Yiqiang Cui, Wen Li, Haiqian Dai, Qiuling Yue, Hao Zhang, Zheng Ying, Xuejiang Guo, Hui Zhu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.668408

Transcriptome Analyses Reveal IL6/Stat3 Signaling Involvement in Radial Glia Proliferation After Stab Wound Injury in the Adult Zebrafish Optic Tectum
Cited by: 6
Author(s): Yuki Shimizu, Mariko Kiyooka, Toshio Ohshima
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07561-x

Methamphetamine-induced changes in myocardial gene transcription are sex-dependent
Cited by: 5
Author(s): Hasitha Chavva, Daniel A. Brazeau, James Denvir, Donald A. Primerano, Jun Fan, Sarah L. Seeley, Boyd R. Rorabaugh
Software Mentions: 1
Published: over 5 years ago

10.1007/s00384-017-2819-3

Study protocol on the role of intestinal microbiota in colorectal cancer treatment: a pathway to personalized medicine 2.0
Cited by: 18
Author(s): Romy Aarnoutse, J. M. P. G. M. de Vos-Geelen, John Penders, Evert-Jan G. Boerma, Fabienne Warmerdam, B. Goorts, Steven W. M. Olde Damink, Zita Soons, Sander S. Rensen, Marjolein L. Smidt
Software Mentions: 1
Published: over 9 years ago

10.18632/aging.103330

PLK1 Inhibition alleviates transplant-associated obliterative bronchiolitis by suppressing myofibroblast differentiation
Cited by: 7
Author(s): Jizhang Yu, Heng Xu, Jikai Cui, Shanshan Chen, Hao Zhang, Yanqiang Zou, Jing Zhao, Le Shen, Lang Jiang, Zhang Chen, Hao Líu, Dan Zhang, Jiahong Xia, Jie Wu
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13174

Mybl2 rejuvenates heart explant‐derived cells from aged donors after myocardial infarction
Cited by: 9
Author(s): Ghazaleh Rafatian, Maryam Kamkar, Sandrine Parent, Connor Michie, Yousef Risha, André S.D. Molgat, Richard J. Seymour, Erik J. Suuronen, Darryl R. Davis
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7010030

Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring
Cited by: 13
Author(s): François Danion, Norman van Rhijn, Alexandre Dufour, Rachel Legendre, Odile Sismeiro, Hugo Varet, Jean‐Christophe Olivo‐Marin, Isabelle Mouyna, Georgios Chamilos, Michael Bromley, Anne Beauvais, Jean‐Paul Latgé
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22147570

Somatotroph Tumors and the Epigenetic Status of the GNAS Locus
Cited by: 4
Author(s): Pauline Romanet, Justine Galluso, Peter Kamenický, Mirella Hage, Marily Theodoropoulou, Catherine Roche, Thomas Graillon, Heather C. Etchevers, D. De Murat, Grégory Mougel, Dominique Figarella‐Branger, Henry Dufour, Thomas Cuny, Guillaume Assié, Anne Barlier
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.613497

Crosstalk Between Retinoic Acid and Sex-Related Genes Controls Germ Cell Fate and Gametogenesis in Medaka
Cited by: 2
Author(s): Mateus Contar Adolfi, Amaury Herpin, Anabel Martinez-Bengochea, Susanne Kneitz, Martina Regensburger, David J. Grunwald, Manfred Schartl
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13072-021-00414-7

Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle
Cited by: 7
Author(s): Ilan M. Ruhr, Jacob Bierstedt, Turk Rhen, Debojyoti Das, Sunil Kumar Singh, Soleille Miller, Dane A. Crossley, Gina L. J. Galli
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-018-4440-4

Chronophin regulates active vitamin B6 levels and transcriptomic features of glioblastoma cell lines cultured under non-adherent, serum-free conditions
Cited by: 7
Author(s): Markus Schulze, Maria Hutterer, Anja Sabo, S Hoja, Julia Lorenz, Tanja Rothhammer-Hampl, Christel Herold‐Mende, Lucia Floßbach, Camelia Monoranu, Markus J. Riemenschneider
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2021.695311

Distinct and Coordinated Regulation of Small Non-coding RNAs by E2f1 and p53 During Drosophila Development and in Response to DNA Damage
Cited by: 3
Author(s): Dong Liu, Ying Ge, Ze Zhao, Rui Zhu, Xiang Wang, Xiaolin Bi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4773-z

Characterization of microRNA and mRNA expression profiles in skin tissue between early-feathering and late-feathering chickens
Cited by: 9
Author(s): Guijun Fang, Xiaoyun Jia, Hua Li, Shuo Tan, Qinghua Nie, Hui Yu, Ying Yang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0008387

Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children
Cited by: 19
Author(s): Chandni Desai, Scott A. Handley, Rachel Rodgers, Cynthia Rodríguez, M. Isabel Ordiz, Mark Manary, Lori R. Holtz
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.605875

Mdfi Promotes C2C12 Cell Differentiation and Positively Modulates Fast-to-Slow-Twitch Muscle Fiber Transformation
Cited by: 14
Author(s): Bo Huang, Yiren Jiao, Yifan Zhu, Zuocheng Ning, Zijian Ye, Qing X. Li, Chen Hu, Chong Wang
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2020.106123

Transcriptomic dataset of wild type and phoP mutant Pectobacterium versatile
Cited by: 2
Author(s): Natalia Gogoleva, Uljana Kravchenko, Yevgeny Nikolaichik, Alexander A. Kamnev
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.634056

Genomic and Transcriptomic Analyses Reveals ZNF124 as a Critical Regulator in Highly Aggressive Medulloblastomas
Cited by: 8
Author(s): Zaili Luo, Xinran Dong, Jianzhong Yu, Yong Xia, Kalen Berry, Rohit Rao, Lei Xu, Ping Xue, Tong Chen, Yifeng Lin, Jiyang Yu, Guoying Huang, Hao Li, Wenhao Zhou, Qi Lu
Software Mentions: 1
Published: over 5 years ago

10.3390/jof7040295

Genome-Wide Identification and Analysis of Nilaparvata lugens microRNAs during Challenge with the Entomopathogenic Fungus Metarhizium anisopliae
Cited by: 3
Author(s): Jiaqin Xie, Yifan Peng, Yuxian Xia
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2021.106726

RNA sequencing data for heat stress response in isolated medicago truncatula seed tissues
Cited by: 3
Author(s): Zhijuan Chen, Benoît Ly Vu, Olivier Leprince, Jérôme Verdier
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.00669

Further Evidence That MicroRNAs Can Play a Role in Hemophilia A Disease Manifestation: F8 Gene Downregulation by miR-19b-3p and miR-186-5p
Cited by: 6
Author(s): Katarzyna I. Jankowska, Joseph R. McGill, Behnaz Pezeshkpoor, Johannes Oldenburg, Zuben E. Sauna, Chintamani D. Atreya
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7050366

Transcriptional Analysis of Coccidioides immitis Mycelia and Spherules by RNA Sequencing
Cited by: 12
Author(s): Aaron F. Carlin, Sinem Beyhan, Jesús F. Peña, Jason E. Stajich, Suganya Viriyakosol, Joshua Fierer, Theo N. Kirkland
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms18091977

Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection
Cited by: 44
Author(s): Libo He, Aidi Zhang, Lv Xiong, Yongming Li, Rong Huang, Lanjie Liao, Zhu Zhang, And Yaping Wang
Software Mentions: 1
Published: about 9 years ago

10.3390/jof7060447

Changes in Digestive Microbiota, Rumen Fermentations and Oxidative Stress around Parturition Are Alleviated by Live Yeast Feed Supplementation to Gestating Ewes
Cited by: 6
Author(s): Lysiane Dunière, Damien Esparteiro, Yacine Lebbaoui, Philippe Ruiz, Mickaël Bernard, Agnès Thomas, Denys Durand, Evelyne Forano, Frédérique Chaucheyras‐Durand
Software Mentions: 1
Published: over 5 years ago

10.3390/jof7060463

MoGLN2 Is Important for Vegetative Growth, Conidiogenesis, Maintenance of Cell Wall Integrity and Pathogenesis of Magnaporthe oryzae
Cited by: 12
Author(s): Osakina Aron, Min Wang, Lian‐Yu Lin, Wajjiha Batool, Birong Lin, Abdul Shabbir, Zonghua Wang, Wei Tang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.00173

Inhibition of Gamma-Secretase Promotes Axon Regeneration After a Complete Spinal Cord Injury
Cited by: 13
Author(s): Daniel Sobrido‐Cameán, Diego Robledo, Daniel Romaus-Sanjurjo, Vanessa Pérez-Cedrón, Laura Sánchez, Marı́a Celina Rodicio, Antón Barreiro‐Iglesias
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.565355

LncRNA AC010789.1 Promotes Colorectal Cancer Progression by Targeting MicroRNA-432-3p/ZEB1 Axis and the Wnt/β-Catenin Signaling Pathway
Cited by: 15
Author(s): Weili Duan, Xue Kong, Juan Li, Peilong Li, Yinghui Zhao, Tong Liu, Helen Binang, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0009738

In vitro culture of freshly isolated Trypanosoma brucei brucei bloodstream forms results in gene copy-number changes
Cited by: 6
Author(s): Julius Mulindwa, Geofrey Ssentamu, Enock Matovu, Kevin Kamanyi Marucha, Francisco Aresta‐Branco, Claudia Helbig, Christine Clayton
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9061232

The Fungal Effector Mlp37347 Alters Plasmodesmata Fluxes and Enhances Susceptibility to Pathogen
Cited by: 7
Author(s): Saifur Rahman, Mst Hur Madina, Mélodie B. Plourde, Karen Cristine Gonçalves dos Santos, Xiaoqiang Huang, Yang Zhang, Jean‐François Laliberté, Hugo Germain
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.618796

Modeling Uremic Vasculopathy With Induced Pluripotent Stem Cell-Derived Endothelial Cells as a Drug Screening System
Cited by: 3
Author(s): Hye Ryoun Jang, Hyung Joon Cho, Yang Zhou, Ning‐Yi Shao, Kyung-Ho Lee, Hoai Huong Thi Le, Junseok Jeon, Jung Eun Lee, Wooseong Huh, Sang-Ging Ong, Won Hee Lee, Yoon-Goo Kim
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9010199

Fecal Microbiota Transplant from Human to Mice Gives Insights into the Role of the Gut Microbiota in Non-Alcoholic Fatty Liver Disease (NAFLD)
Cited by: 28
Author(s): Sebastian D. Burz, Magali Monnoye, Catherine Philippe, William Farin, Vlad Ratziu, Francesco Strozzi, Jean‐Michel Paillarse, Laurent Chêne, Hervé M. Blottière, Philippe Gérard
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.613540

CircRNAs Dysregulated in Juvenile Myelomonocytic Leukemia: CircMCTP1 Stands Out
Cited by: 10
Author(s): Anna Dal Molin, Mattias Hofmans, Enrico Gaffo, Alessia Buratin, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose, G. te Kronnie, Silvia Bresolin, Tim Lammens, Stefania Bortoluzzi
Software Mentions: 1
Published: almost 6 years ago

10.3390/jof7070525

Micafungin-Induced Cell Wall Damage Stimulates Morphological Changes Consistent with Microcycle Conidiation in Aspergillus nidulans
Cited by: 5
Author(s): Samantha Reese, Cynthia Chelius, Wayne R. Riekhof, Mark R. Marten, Steven D. Harris
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13310

Decreased p53 is associated with a decline in asymmetric stem cell self‐renewal in aged human epidermis
Cited by: 6
Author(s): Alexandra Charruyer, T. Weisenberger, Hang Li, A. Khalifa, Andrew Schroeder, Annika Belzer, Ruby Ghadially
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-021-07856-z

Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance
Cited by: 9
Author(s): Ke Chen, Yajun Peng, Liang Zhang, Long Wang, Donghai Mao, Zixiang Zhao, Lianyang Bai, Lifeng Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.601521

THBS1/CD47 Modulates the Interaction of γ-Catenin With E-Cadherin and Participates in Epithelial–Mesenchymal Transformation in Lipid Nephrotoxicity
Cited by: 6
Author(s): Li Gao, Tingting Yang, Junsheng Zhang, Hongxia Liu, Dong-Cheng Cai, Lintao Wang, Jing Wang, Xinwei Li, Kun Gao, Su-Ya Zhang, Yujia Cao, Xiaoxia Ji, Miaomiao Yang, Biao Han, Sheng Wang, Lu He, Xin Nie, Danmei Liu, Gang Ma, Chaoyong He
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0008014

Distinct gene expression patterns in vector-residing Leishmania infantum identify parasite stage-enriched markers
Cited by: 15
Author(s): Iliano V. Coutinho-Abreu, Tiago D. Serafim, Claudio Meneses, Shaden Kamhawi, Fabiano Oliveira, Jesús G. Valenzuela
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7080677

Physcomitrium patens Infection by Colletotrichum gloeosporioides: Understanding the Fungal–Bryophyte Interaction by Microscopy, Phenomics and RNA Sequencing
Cited by: 9
Author(s): Adriana Otero-Blanca, Yordanis Pérez-Llano, Guillermo Reboledo-Blanco, Verónica Lira-Ruan, Daniel Padilla‐Chacón, Jorge Luis Folch-Mallol, María del Rayo Sánchez-Carbente, Inés Ponce de León, Ramón Alberto Batista-García
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-017-3233-5

Aberrant expression of ALK and EZH2 in Merkel cell carcinoma
Cited by: 20
Author(s): Tuukka Veija, Virve Koljonen, Tom Böhling, Mia Kero, Sakari Knuutila, Virinder Sarhadi
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22137153

Identification of Novel miRNAs and Their Target Genes in the Response to Abscisic Acid in Arabidopsis
Cited by: 3
Author(s): Syed Muhammad Muntazir Mehdi, Sivakumar Krishnamoorthy, Michał Wojciech Szcześniak, Agnieszka Ludwików
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.653724

SPTBN1 Prevents Primary Osteoporosis by Modulating Osteoblasts Proliferation and Differentiation and Blood Vessels Formation in Bone
Cited by: 8
Author(s): Xuejuan Xu, Jiayi Yang, Yanshi Ye, Guoqiang Chen, Yinhua Zhang, Hangtian Wu, Yu-Qian Song, Meichen Feng, Xiaoting Feng, Xingying Chen, Xiao Wang, Xu Lin, Xiaochun Bai, Jie Shen
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.604232

SIN3A Regulates Porcine Early Embryonic Development by Modulating CCNB1 Expression
Cited by: 2
Author(s): Lei Luo, Yanna Dang, Yan Shi, Panpan Zhao, Yunhai Zhang, Kun Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.693742

Immature Follicular Origins and Disrupted Oocyte Growth Pathways Contribute to Decreased Gamete Quality During Reproductive Juvenescence in Mice
Cited by: 4
Author(s): Atsuko Kusuhara, Elnur Babayev, Luhan T. Zhou, Vijay Pratap Singh, Jennifer L. Gerton, Francesca E. Duncan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22136987

Transcriptional Profiling of Cardiac Cells Links Age-Dependent Changes in Acetyl-CoA Signaling to Chromatin Modifications
Cited by: 2
Author(s): Justin Kurian, Veronica Bohl, Michael Behanan, Sadia Mohsin, Mohsin Khan
Software Mentions: 1
Published: over 5 years ago

10.3390/curroncol28040245

The Sex Differences in Uveal Melanoma: Potential Roles of EIF1AX, Immune Response and Redox Regulation
Cited by: 5
Author(s): Feng Liu‐Smith, Chi‐Yang Chiu, Daniel L. Johnson, P. Winston Miller, Evan S. Glazer, Zhao-Hui Wu, Matthew W. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-017-2553-2

Pleiotropic alterations in gene expression in Latin American Fasciola hepatica isolates with different susceptibility to drugs
Cited by: 14
Author(s): Santiago Radío, Santiago Fontenla, Victoria Solana, Anna C. M. Salim, Flávio Marcos Gomes Araújo, Pedro Ortiz, Cristian Hobán, Estefan Miranda-Miranda, Valeria Gayo, Fabiano Sviatopolk-Mirsky Pais, H. Solana, Guilherme Oliveira, Pablo Smircich, José F. Tort
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu13093116

Dietary Supplementation with Transgenic Camelina sativa Oil Containing 20:5n-3 and 22:6n-3 or Fish Oil Induces Differential Changes in the Transcriptome of CD3+ T Lymphocytes
Cited by: 1
Author(s): Annette L. West, Elizabeth A. Miles, Lihua Han, Karen A. Lillycrop, Johnathan A. Napier, Philip C. Calder, Graham C. Burdge
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22147557

A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides
Cited by: 1
Author(s): Katrin M. H. Eisenhardt, Bernhardt Remes, Julian Grützner, Daniel-Timon Spanka, Andreas Jäger, Gabriele Klug
Software Mentions: 1
Published: over 5 years ago

10.1007/s00535-021-01814-y

Mucosal and faecal neutrophil gelatinase-associated lipocalin as potential biomarkers for collagenous colitis
Cited by: 10
Author(s): Ingrid Bakke, Gunnar Andreas Walaas, Torunn Bruland, Elin Synnøve Røyset, Celia Escudero-Hernández, Silje Thorsvik, Andreas Münch, Arne K. Sandvik, Ann Elisabet Østvik
Software Mentions: 1
Published: about 5 years ago

10.1038/s41375-021-01234-0

RNA-sequencing data-driven dissection of human plasma cell differentiation reveals new potential transcription regulators
Cited by: 26
Author(s): Alboukadel Kassambara, Laurie Herviou, Sara Ovejero, Michel Jourdan, Coraline Thibaut, Veronika Vikova, Philippe Pasero, Olivier Elemento, Jérôme Moreaux
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-07905-6

EML4-ALK induces cellular senescence in mortal normal human cells and promotes anchorage-independent growth in hTERT-transduced normal human cells
Cited by: 3
Author(s): Akihiko Miyanaga, Masaru Matsumoto, Jessica Beck, Izumi Horikawa, Takahiro Oike, Hirokazu Okayama, Hiromi Tanaka, Sandra Burkett, Ana I. Robles, Mohammed A. Khan, Delphine Lissa, Masahiro Seike, Akihiko Gemma, Hiroyuki Mano, Curtis C. Harris
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cub.2020.07.055

HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella
Cited by: 4
Author(s): Yang Dong, Mateusz Majda, Jan Šimura, Róbert Horváth, Anjil Kumar Srivastava, Łukasz Łangowski, Tilly Eldridge, Nicola Stacey, Tanja Slotte, Ari Sadanandom, Karin Ljung, Richard S. Smith, Lars Østergaard
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cub.2020.09.066

Two MicroRNAs Are Sufficient for Embryonic Patterning in C. elegans
Cited by: 14
Author(s): Philipp J Dexheimer, Jingkui Wang, Luisa Cochella
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/3730657

The Search of miRNA Related to Invasive Growth of Nonfunctioning Gonadotropic Pituitary Tumors
Cited by: 4
Author(s): Joanna Boresowicz, Paulina Kober, Natalia Rusetska, Maria Maksymowicz, Agnieszka Paziewska, Michalina Dąbrowska, Natalia Żeber‐Lubecka, Jacek Kunicki, Wiesław Bonicki, Jerzy Ostrowski, Janusz A. Siedlecki, Mateusz Bujko
Software Mentions: 1
Published: almost 6 years ago

10.7759/cureus.7014

Dissecting the Molecular Signature of Spinal Cord Regeneration in the Axolotl Model
Cited by: 4
Author(s): Turan Demircan
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/5789127

Effects of Estrogen and Estrogen Receptors on Transcriptomes of HepG2 Cells: A Preliminary Study Using RNA Sequencing
Cited by: 13
Author(s): Meikun Shen, Jingyi Cao, Haifei Shi
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2021.641891

Integrated Characterization of lncRNA-Immune Interactions in Prostate Cancer
Cited by: 13
Author(s): Wei Hu, Yanru Wang, Zhixiao Fang, Wei He, Shengli Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-019-1983-3

The circulating exosomal microRNAs related to albuminuria in patients with diabetic nephropathy
Cited by: 48
Author(s): Hyoungnae Kim, Yun-Ui Bae, Jin Seok Jeon, Hyunjin Noh, Hyeong Kyu Park, Dong Won Byun, Dong Cheol Han, Seongho Ryu, Soon Hyo Kwon
Software Mentions: 1
Published: over 7 years ago

10.1186/s13071-020-04294-w

Transcriptome analysis of Aedes aegypti Aag2 cells in response to dengue virus-2 infection
Cited by: 11
Author(s): Man-jin Li, Lan Ce-jie, Heting Gao, Dan Xing, Zhenyu Gu, Duo Su, Tongyan Zhao, Huiying Yang, Chunxiao Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.691050

Hormone-Responsive BMP Signaling Expands Myoepithelial Cell Lineages and Prevents Alveolar Precocity in Mammary Gland
Cited by: 4
Author(s): Chunlei Shao, Pengbo Lou, Ruiqi Liu, Xueyun Bi, Guilin Li, Yang Xu, Xiaole Sheng, Jiuzhi Xu, Cong Lv, Zhengquan Yu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.709280

B Cell Subset Analysis and Gene Expression Characterization in Mid-Luteal Endometrium
Cited by: 5
Author(s): Mengni Shen, Tim Child, Monica Mittal, Geet Sarodey, Rehan Salim, Ingrid Granne, Jennifer H. Southcombe
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.585879

RAD-Deficient Human Cardiomyocytes Develop Hypertrophic Cardiomyopathy Phenotypes Due to Calcium Dysregulation
Cited by: 7
Author(s): Yanan Li, Yun Chang, Xiaolei Li, Xiaowei Li, Jian Gao, Yuanyuan Zhou, Fujian Wu, Rui Bai, Tao Dong, Shuhong Ma, Siyao Zhang, Wenjing Lü, Xiaoqiu Tan, Yongming Wang, Feng Lan
Software Mentions: 1
Published: about 6 years ago

10.1155/2018/5197126

Transcriptome Analysis of Rainbow Trout (Oncorhynchus mykiss) Eggs Subjected to the High Hydrostatic Pressure Treatment
Cited by: 4
Author(s): Artur Gurgul, Klaudia Pawlina-Tyszko, Monika Bugno‐Poniewierska, Tomasz Szmatoła, Igor Jasielczuk, Stefan Dobosz, Konrad Ocalewicz
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/5572076

Transcriptome Profile Analysis of Strawberry Leaves Reveals Flowering Regulation under Blue Light Treatment
Cited by: 9
Author(s): Yuntian Ye, Yongqiang Liu, Xiaolong Li, Qing Chen, Yong Zhang, Zejing Liu, Yan Wang, Yuanxiu Lin, Yunting Zhang, Xiaorong Wang, Haoru Tang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22137215

Metabolite Profiling and Transcriptome Analysis Provide Insight into Seed Coat Color in Brassica juncea
Cited by: 12
Author(s): Shuai Shen, Yunshan Tang, Chao Zhang, Nengwen Yin, Yuanyi Mao, Fangfang Sun, Si Chen, Ran Hu, Xueqin Liu, Guoxia Shang, Liezhao Liu, Kun Lu, Jiana Li, Cunmin Qu
Software Mentions: 1
Published: over 5 years ago

10.1016/j.csbj.2021.01.045

Defining the wheat microbiome: Towards microbiome-facilitated crop production
Cited by: 36
Author(s): Vanessa Nessner Kavamura, Rodrigo Mendes, Adnane Bargaz, Tim H. Mauchline
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.724310

Transcriptome Analysis Reveals an Inhibitory Effect of Dihydrotestosterone-Treated 2D- and 3D-Cultured Dermal Papilla Cells on Hair Follicle Growth
Cited by: 6
Author(s): Yufan Zhang, Junfei Huang, Danlan Fu, Zhen Liu, Hailin Wang, Jin Wang, Qian Qu, Kaitao Li, Zhexiang Fan, Yong Miao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-015-1867-8

RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection
Cited by: 39
Author(s): Esther Wilk, Ashutosh Kumar Pandey, Sarah R. Leist, Bastian Hatesuer, Matthias Preuße, Claudia Pommerenke, Junxi Wang, Klaus Schughart
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20092212

Molecular Signature of Prospero Homeobox 1 (PROX1) in Follicular Thyroid Carcinoma Cells
Cited by: 6
Author(s): Magdalena Rudzińska, Małgorzata Grzanka, Anna Stachurska, Michał Mikula, Katarzyna Paczkowska, Tomasz Stępień, Agnieszka Paziewska, Jerzy Ostrowski, Barbara Czarnocka
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-021-02944-4

Auxin regulated metabolic changes underlying sepal retention and development after pollination in spinach
Cited by: 11
Author(s): Mahpara Fatima, Xiaokai Ma, Ping Zhou, Madiha Zaynab, Ray Ming
Software Mentions: 1
Published: over 5 years ago

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