bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-94113-8

Circulating miRNome of Trachemys scripta after elective gonadectomy under general anesthesia
Cited by: 1
Author(s): Edoardo Bardi, Stefano Brizzola, Giuliano Ravasio, S. Romussi, P. DallʼAra, Valentina Zamarian, Maddalena Arigoni, Raffaele Calogero, Cristina Lecchi
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00345

Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface
Cited by: 11
Author(s): Courtney Klotz, Yong Jun Goh, Sarah O’Flaherty, Brant R. Johnson, Rodolphe Barrangou
Software Mentions: 1
Published: over 6 years ago

10.15252/embr.201948789

Non‐apoptotic TRAIL function modulates NK cell activity during viral infection
Cited by: 11
Author(s): Ludmila Cardoso Alves, Michael Berger, Θεόδωρος Κουτσανδρέας, Nick Kirschke, Christoph Lauer, Roman Spörri, Aristotelis Chatziioannou, Nadia Corazza, Philippe Krebs
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0250977

Peptide 1018 inhibits swarming and influences Anr-regulated gene expression downstream of the stringent stress response in Pseudomonas aeruginosa
Cited by: 3
Author(s): Lauren Wilkinson, Morgan A. Alford, Shannon R. Coleman, Bing Wu, Ahwon Lee, Travis M. Blimkie, Manjeet Bains, Reza Falsafi, Daniel Pletzer, Robert E. W. Hancock
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009534

Dual transcriptional analysis reveals adaptation of host and pathogen to intracellular survival of Pseudomonas aeruginosa associated with urinary tract infection
Cited by: 24
Author(s): Cristina Peñaranda, Nicole M. Chumbler, Deborah T. Hung
Software Mentions: 1
Published: over 5 years ago

10.3390/md19060322

Okadaic Acid Exposure Induced Neural Tube Defects in Chicken (Gallus gallus) Embryos
Cited by: 6
Author(s): Yu-hu Jiao, Guang Wang, Dawei Li, Hongye Li, Jie‐Sheng Liu, Xuesong Yang, Wei‐Dong Yang
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00802-21

Microbiota Perturbation or Elimination Can Inhibit Normal Development and Elicit a Starvation-Like Response in an Omnivorous Model Invertebrate
Cited by: 11
Author(s): Arturo Vera‐Ponce de León, Benjamin C. Jahnes, Alejandro Otero-Bravo, Zakee L. Sabree
Software Mentions: 1
Published: about 5 years ago

10.1111/tpj.12835

Highly specific gene silencing in a monocot species by artificial micro<scp>RNA</scp>s derived from chimeric mi<scp>RNA</scp> precursors
Cited by: 39
Author(s): Alberto Carbonell, Noah Fahlgren, Skyler Mitchell, Kevin L. Cox, Kevin C. Reilly, Todd C. Mockler, James C. Carrington
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0181562

Dysregulation of endothelial colony-forming cell function by a negative feedback loop of circulating miR-146a and -146b in cardiovascular disease patients
Cited by: 21
Author(s): Ting Chang, Wei Chi Tsai, Tsung Hui Huang, Shao Bo Su, Chih Young Chang, Hsiu Ju Yen, Chun Hsien Wu, Chung‐May Yang, Chi Lin, Po Hsun Huang, Cheng Chung Cheng, Soo‐Chen Cheng, Hsei Wei Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-94552-3

Transcriptome analysis of flowering regulation by sowing date in Japonica Rice (Oryza sativa L.)
Cited by: 1
Author(s): Min Yin, Hengyu Ma, Wang Meng-jia, Guang Chu, Yuanhui Liu, Chunmei Xu, Xiufu Zhang, Danying Wang, Chen Song
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-94332-z

Context-dependent effects of whole-genome duplication during mammary tumor recurrence
Cited by: 7
Author(s): R. Newcomb, E. Jedediah Dean, Brock J. McKinney, James V. Alvarez
Software Mentions: 1
Published: over 5 years ago

10.1111/tpj.14508

Chlorella vulgaris genome assembly and annotation reveals the molecular basis for metabolic acclimation to high light conditions
Cited by: 30
Author(s): Michela Cecchin, Luca Marcolungo, Marzia Rossato, Laura Girolomoni, Emanuela Cosentino, Stéphan Cuiné, Yonghua Li‐Beisson, Massimo Delledonne, Matteo Ballottari
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.14435

Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication
Cited by: 41
Author(s): Muriel Gros-Balthazard, Guillaume Besnard, Gautier Sarah, Yan Holtz, Julie Leclercq, Sylvain Santoni, Daniel Wegmann, Sylvain Glémin, Bouchaïb Khadari
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0155139

Elucidation of the Mode of Action of a New Antibacterial Compound Active against Staphylococcus aureus and Pseudomonas aeruginosa
Cited by: 30
Author(s): Evelien Gerits, Eline Blommaert, Anna Lippell, Alex J. O’Neill, Bram Weytjens, Dries De Maeyer, Ana Carolina Fierro, Kathleen Marchal, Arnaud Marchand, Patrick Chaltin, Pascal Spincemaille, Klaas De Brucker, Karin Thevissen, Bruno P. A. Cammue, Toon Swings, Veerle Liebens, Maarten Fauvart, Natalie Verstraeten, Jan Michiels
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0218892

Isolation, culturing and gene expression profiling of inner mass cells from stable and vulnerable carotid atherosclerotic plaques
Cited by: 7
Author(s): Olga A. Novikova, Zhanna K. Nazarkina, Anna V. Cherepanova, Petr P. Laktionov, Б. П. Челобанов, И. С. Мурашов, Р. В. Деев, Evgeny Pokushalov, А. А. Карпенко, Pavel P. Laktionov
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00622-21

Recurrent Vulvovaginal Candidiasis: a Dynamic Interkingdom Biofilm Disease of Candida and Lactobacillus
Cited by: 29
Author(s): Emily McKloud, Christopher Delaney, Leighann Sherry, Ryan Kean, Shanice Williams, Rebecca Metcalfe, Rachael Thomas, Riina Rautemaa‐Richardson, Konstantinos Gerasimidis, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.573857

Determining the Different Mechanisms Used by Pseudomonas Species to Cope With Minimal Inhibitory Concentrations of Zinc via Comparative Transcriptomic Analyses
Cited by: 4
Author(s): Lei Lei, Jiahui Chen, Weifang Liao, Pulin Liu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0236916

Correction: Expression profiling of disease progression in canine model of Duchenne muscular dystrophy
Cited by: 1
Author(s): Candice Brinkmeyer-Langford, Candice P. Chu, Cynthia Balog-Alvarez, Xue Yu, James J. Cai, Mary B. Nabity, Joe N. Kornegay
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.02488

Negative Control of RpoS Synthesis by the sRNA ReaL in Pseudomonas aeruginosa
Cited by: 16
Author(s): Hue Thi Nguyen, David Romero A., Fabian Amman, Theresa Sorger-Domenigg, Muralidhar Tata, Elisabeth Sonnleitner, Udo Bläsi
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1009887

Aconitate decarboxylase 1 participates in the control of pulmonary Brucella infection in mice
Cited by: 13
Author(s): Aurore Demars, Armelle Vitali, Audrey Comein, Elodie Carlier, Abdulkader Azouz, Stanislas Goriely, Justine Smout, Véronique Flamand, Mégane Van Gysel, Johan Wouters, Jan Abendroth, Thomas E. Edwards, Arnaud Machelart, Eik Hoffmann, Priscille Brodin, Xavier De Bolle, Eric Muraille
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0230820

Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley
Cited by: 24
Author(s): Behnam Derakhshani, Hossein Jafary, Bahram Maleki Zanjani, Karim Hasanpur, Kohei Mishina, Tsuyoshi Tanaka, Yoshihiro Kawahara, Youko Oono
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-95009-3

The role of epigenetic modifications, long-range contacts, enhancers and topologically associating domains in the regulation of glioma grade-specific genes
Cited by: 2
Author(s): Ilona Grabowicz, Bartek Wilczyński, Bożena Kamińska, Adria‐Jaume Roura, Bartosz Wojtaś, Michal Dabrowski
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00250-21

Microaerobic Lifestyle at Nanomolar O 2 Concentrations Mediated by Low-Affinity Terminal Oxidases in Abundant Soil Bacteria
Cited by: 7
Author(s): Daniela Trojan, Emilio García‐Robledo, Dimitri V. Meier, Bela Hausmann, Niels Peter Revsbech, Stephanie A. Eichorst, Dagmar Woebken
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.2618

Low expression of long noncoding RNA CTC‐297N7.9 predicts poor prognosis in patients with hepatocellular carcinoma
Cited by: 14
Author(s): Sicong Zhu, Xuelian Huang, Kelin Zhang, Wenliang Tan, Lin Zhong, Qiuming He, Yajin Chen, Chao Shang
Software Mentions: 1
Published: about 7 years ago

10.3389/fcimb.2018.00370

Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT)
Cited by: 8
Author(s): Magdalena Franco, Patrik D’haeseleer, Steven S. Branda, Megan J. Liou, Yasmeen Haider, Brent W. Segelke, Sahar H. El-Etr
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-95051-1

Pre-pregnancy BMI-associated miRNA and mRNA expression signatures in the placenta highlight a sexually-dimorphic response to maternal underweight status
Cited by: 8
Author(s): Jeliyah Clark, Lauren A. Eaves, Adriana R. Gaona, Hudson P. Santos, Lisa Smeester, Jacqueline T. Bangma, Julia E. Rager, T. Michael O’Shea, Rebecca C. Fry
Software Mentions: 1
Published: over 5 years ago

10.1093/pcmedi/pbaa037

Vegetarian diets, circulating miRNA expression and healthspan in subjects living in the Blue Zone
Cited by: 9
Author(s): Tiantian Liu, Nicole M. Gatto, Zhong Chen, Hongyu Qiu, Grace Lee, Penelope J. Duerksen-Hughes, Gary E. Fraser, Charles Wang
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2020.00434

Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation
Cited by: 19
Author(s): Jie Zhou, Yu Zhang, Ping Cui, Lijia Luo, Hui Chen, Bingyu Liang, Junjun Jiang, Chuanyi Ning, Tian Liang, Xiaodan Zhong, Ye Li, Linlin Hao, Jiegang Huang
Software Mentions: 1
Published: about 6 years ago

10.1073/pnas.1811768116

Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain
Cited by: 44
Author(s): Anne L. Sapiro, Anat Shmueli, Gilbert L. Henry, Qin Li, Tali Shalit, Orly Yaron, Yoav Paas, Galit Shohat-Ophir
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.557180

Distinct Changes Occur in the Human Breast Milk Microbiome Between Early and Established Lactation in Breastfeeding Guatemalan Mothers
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Chen Li, Lilian Lopez Leyva, Noel W. Solomons, Luis B. Agellon, Marilyn Scott, Kristine G. Koski
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.6710

Automated analysis of small RNA datasets with RAPID
Cited by: 8
Author(s): Sivarajan Karunanithi, Martín Simón, Marcel H. Schulz
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.50226

An RNAi screen unravels the complexities of Rho GTPase networks in skin morphogenesis
Cited by: 8
Author(s): Mélanie Laurin, Nicholas C. Gomez, John Levorse, Ataman Sendoel, Megan Sribour
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-95291-1

Yippee like 4 (Ypel4) is essential for normal mouse red blood cell membrane integrity
Cited by: 5
Author(s): Alexander Mattebo, Taha Sen, Maria Jassinskaja, Kristýna Pimková, Isabel Prieto González-Albo, Abdul Ghani Alattar, Ramprasad Ramakrishnan, Stefan Lang, Marcus Järås, Jenny Hansson, Shamit Soneji, Sofie Singbrant, Emile van den Akker, Johan Flygare
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.1912074117

Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters
Cited by: 21
Author(s): Mathieu Boulard, Sofia Rucli, John Edwards, Timothy H. Bestor
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-019-0979-7

KDM3B suppresses APL progression by restricting chromatin accessibility and facilitating the ATRA-mediated degradation of PML/RARα
Cited by: 12
Author(s): Xinrui Wang, Huiyong Fan, Congling Xu, Guojuan Jiang, Haiwei Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-95709-w

Comparative transcriptome analysis of the gills and hepatopancreas from Macrobrachium rosenbergii exposed to the heavy metal Cadmium (Cd2+)
Cited by: 5
Author(s): Xue Li, Hong Jiang, Baoqing Ye, Hongli Qian, Ziqi Guo, Haotian Bai, Jing Gong, Jianbin Feng, M. A. Knepper
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201900599

The health status alters the pituitary function and reproduction of mice in aCxcr2-dependent manner
Cited by: 8
Author(s): Colin Timaxian, Isabelle Raymond‐Letron, Céline Bouclier, Linda Gulliver, Ludovic Le Corre, Karim Chébli, Amaury Guillou, Patrice Mollard, Karl Balabanian, Gwendal Lazennec
Software Mentions: 1
Published: almost 7 years ago

10.1073/pnas.2026183118

Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD + capping
Cited by: 14
Author(s): Hailei Zhang, Huan Zhong, Xufeng Wang, Shoudong Zhang, Xiaojian Shao, Hao Hu, Zhi‐Ling Yu, Zongwei Cai, Xuemei Chen, Yiji Xia
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-95324-9

Diffusible signal factor signaling controls bioleaching activity and niche protection in the acidophilic, mineral-oxidizing leptospirilli
Cited by: 6
Author(s): Sören Bellenberg, Beatriz Salas, Suresh Ganji, Cristian Jorquera-Román, Marı́a Luisa Valenzuela, Antoine Buetti‐Dinh, C. Rikard Unelius, Mark Dopson, Mario Vera
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.58295

Crosstalk between nitric oxide and retinoic acid pathways is essential for amphioxus pharynx development
Cited by: 4
Author(s): Filomena Caccavale, Giovanni Annona, Lucie Subirana, Héctor Escrivà, Stéphanie Bertrand, Salvatore D’Aniello
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/5512166

Gene Expression Profiling and Biofunction Analysis of HepG2 Cells Targeted by Crocetin
Cited by: 0
Author(s): Yi-Ling Wen, Yong Li, Guangcheng Zhu, Zhibing Zheng, Meng Shi, Si Qin
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-018-0077-1

Peatland Acidobacteria with a dissimilatory sulfur metabolism
Cited by: 121
Author(s): Bela Hausmann, Claus Pelikan, Craig W. Herbold, Stephan Köstlbacher, Mads Albertsen, Stephanie A. Eichorst, Tijana Glavina del Rio, Martin Huemer, Per Halkjær Nielsen, Thomas Rattei, Ulrich Stingl, Susannah G. Tringe, Daniela Trojan, Cécilia Wentrup, Dagmar Woebken, Michael Pester, Alexander Loy
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-95712-1

miR-181c-5p mediates apoptosis of vascular endothelial cells induced by hyperoxemia via ceRNA crosstalk
Cited by: 3
Author(s): Jizhi Wu, Guangqi Zhang, Hui Xiong, Yuguang Zhang, Gang Ding, Junfeng Ge
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.2119

Integrated microRNA, gene expression and transcription factors signature in papillary thyroid cancer with lymph node metastasis
Cited by: 30
Author(s): Nurul Syakima Ab Mutalib, Sri Noraima Othman, Azliana Mohamad Yusof, Shahrun Niza Abdullah Suhaimi, Rohaizak Muhammad, A. Rahman A. Jamal
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.00359

New Insights into the Anti-pathogenic Potential of Lactococcus garvieae against Staphylococcus aureus Based on RNA Sequencing Profiling
Cited by: 9
Author(s): Pierre Delpech, Étienne Rifa, Graham Ball, Sabine Nidelet, Emeric Dubois, Geneviève Gagné, Marie‐Christine Montel, Céline Delbès, Stéphanie Bornes
Software Mentions: 1
Published: over 9 years ago

10.15252/emmm.201707825

The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology
Cited by: 58
Author(s): Ana Martinez Hernandez, Hendrik Urbanke, Alan L. Gillman, Joon Lee, Sergey Ryazanov, Hope Yao Agbemenyah, Eva Benito, Gaurav Jain, Lalit Kaurani, Gayane Grigorian, Andrei Leonov, Nasrollah Rezaei‐Ghaleh, Petra Wilken, Fernando Terán Arce, Jens A. Wagner, Martin Fuhrman, Mario Caruana, Angelique Camilleri, Neville Vassallo, Markus Zweckstetter, Roland Benz, Armin Giese, Anja Schneider, Martin Körte, Ratnesh Lal, Christian Griesinger, Gregor Eichele, André Fischer
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0224578

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA
Cited by: 11
Author(s): Simon Haile, Richard Corbett, Steve Bilobram, Karen Mungall, Bruno M. Grande, Heather Kirk, Pawan Pandoh, Tina MacLeod, Helen McDonald, Miruna Bala, Robin Coope, Richard A. Moore, Yongjun Zhao, Ryan D. Morin, Steven J.M. Jones, Marco A. Marra
Software Mentions: 1
Published: about 7 years ago

10.1007/s13238-020-00811-w

Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection
Cited by: 63
Author(s): Rongjuan Pei, Jianqi Feng, Yecheng Zhang, Hao Sun, Lian Li, Xuejie Yang, Jiangping He, Shuqi Xiao, Ji Xiong, Ying Lin, Kai Wen, Hongwei Zhou, Jiekai Chen, Zhili Rong, Xinwen Chen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2019.00354

Gene Expression Profiling of Neospora caninum in Bovine Macrophages Reveals Differences Between Isolates Associated With Key Parasite Functions
Cited by: 11
Author(s): Marta García-Sánchez, Laura Jiménez-Pelayo, Pilar Horcajo, Javier Regidor‐Cerrillo, Esther Collantes-Fernández, Luís Miguel Ortega-Mora
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-96184-z

Secretome screening reveals immunomodulating functions of IFNα-7, PAP and GDF-7 on regulatory T-cells
Cited by: 5
Author(s): Mei Ding, Rajneesh Malhotra, Tomas Ottosson, Magnus Lundqvist, Aman Mebrahtu, Johan Brengdahl, Ulf Gehrmann, Elisabeth Bäck, Douglas Ross‐Thriepland, Ida Isaksson, Björn Magnusson, Kris F. Sachsenmeier, Hanna Tegel, Sophia Hober, Mathias Uhlén, Lorenz M. Mayr, Rick Davies, Johan Rockberg, L. Holmberg Schiavone
Software Mentions: 1
Published: about 5 years ago

10.1007/s00213-018-5094-2

Altered fecal microbiota composition in the Flinders sensitive line rat model of depression
Cited by: 39
Author(s): Sandra Tillmann, Anders Abildgaard, Gudrun Winther, Gregers Wegener
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2020.586592

miR-1207-5p Can Contribute to Dysregulation of Inflammatory Response in COVID-19 via Targeting SARS-CoV-2 RNA
Cited by: 30
Author(s): Giorgio Bertolazzi, Chiara Cipollina, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2021.668859

Congenital Asplenia Interrupts Immune Homeostasis and Leads to Excessive Systemic Inflammation in Zebrafish
Cited by: 4
Author(s): Lang Xie, Zhe-Yu Chen, Hui Guo, Yixi Tao, Xiaomin Miao, Ronghua Wu, Yun Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2021.636834

Transcriptomic and Metabolomic Analysis Revealed Roles of Yck2 in Carbon Metabolism and Morphogenesis of Candida albicans
Cited by: 10
Author(s): Karl Liboro, Seong Ryong Yu, Jae-Hwan Lim, Yee Seul So, Yong-Sun Bahn, Hyungjin Eoh, Hyun‐Sook Park
Software Mentions: 1
Published: over 5 years ago

10.1080/22221751.2019.1700762

Transcriptional response to metal starvation in the emerging pathogen Mycoplasma genitalium is mediated by Fur-dependent and –independent regulatory pathways
Cited by: 6
Author(s): Carlos Martínez-Torró, Sergi Torres-Puig, Marta Monge, Lucía Sánchez-Alba, Miguel González-Martín, Marina Marcos-Silva, Alex Perálvarez‐Marín, Françesc Canals, Enrique Querol, Jaume Piñol, Óscar Q. Pich
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0247837

The overexpression of DNA repair genes in invasive ductal and lobular breast carcinomas: Insights on individual variations and precision medicine
Cited by: 6
Author(s): Ruwaa I. Mohamed, Salma A. Bargal, Asmaa S. Mekawy, Iman El-Shiekh, Nurcan Tunçbağ, Alaa S. Ahmed, Eman Badr, Menattallah Elserafy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-96785-8

Desensitization of human breast progenitors by a transient exposure to pregnancy levels of estrogen
Cited by: 0
Author(s): Lone Rønnov‐Jessen, Jiyoung Kim, Nadine Goldhammer, Marie Christine Klitgaard, Martynas Smicius, Marc Baker Bechmann, René Villadsen, Ole W. Petersen
Software Mentions: 1
Published: about 5 years ago

10.1098/rsos.171743

Glucocorticoids modulate gastrointestinal microbiome in a wild bird
Cited by: 74
Author(s): José C. Noguera, Manuel Aira, Marcos Pérez‐Losada, Jorge Domínguez, Alberto Velando
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0208755

Longitudinal changes in the expression of IL-33 and IL-33 regulated genes in relapsing remitting MS
Cited by: 5
Author(s): Sriram Subramaniam, Guzel Shaginurova, John T. Tossberg, Chandramohan Natarajan, Charles F. Spurlock, Thomas M. Aune
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2019.00272

Resuscitation of Dormant “Non-culturable” Mycobacterium tuberculosis Is Characterized by Immediate Transcriptional Burst
Cited by: 26
Author(s): Elena G. Salina, Artem Grigorov, Oksana S. Bychenko, Yulia V. Skvortsova, Ilgar Z. Mamedov, Tatyana Azhikina, Arseny S. Kaprelyants
Software Mentions: 1
Published: over 7 years ago

10.26508/lsa.201900488

Kinesin-8B controls basal body function and flagellum formation and is key to malaria transmission
Cited by: 28
Author(s): Mohammad Zeeshan, David J. P. Ferguson, Steven Abel, Alana Burrrell, Edward Rea, Declan Brady, Emilie Daniel, Michael J. Delves, Sue Vaughan, Anthony A. Holder, Karine G. Le Roch, Carolyn A. Moores, Rita Tewari
Software Mentions: 1
Published: over 7 years ago

10.1002/pld3.14

ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1 ) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (O. sativa )
Cited by: 24
Author(s): Juan David Arbelaez, Lyza Maron, Timothy O. Jobe, Miguel A. Piñeros, Adam N. Famoso, Ana Rita Rebelo, Namrata Singh, Qiyue Ma, Zhangjun Fei, Leon V. Kochian, Susan R. McCouch
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2018.03201

Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
Cited by: 18
Author(s): Lisa Franziska Bischof, M. Florencia Haurat, Lena Hoffmann, Andreas Albersmeier, Jacqueline Wolf, Astrid Neu, Trong Khoa Pham, Stefan P. Albaum, Tobias Jakobi, Stefan Schouten, Meina Neumann‐Schaal, Phillip C. Wright, Jörn Kalinowski, Bettina Siebers, Sonja Albers
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.redox.2019.101323

A Caenorhabditis elegans ortholog of human selenium-binding protein 1 is a pro-aging factor protecting against selenite toxicity
Cited by: 16
Author(s): Karl Köhnlein, Nadine Urban, David Guerrero-Gómez, Holger Steinbrenner, Pavel Urbánek, Josephine Priebs, Philipp Koch, Christoph Kaether, Antonio Miranda‐Vizuete, Lars‐Oliver Klotz
Software Mentions: 1
Published: almost 7 years ago

10.1002/cam4.3911

Ubiquitin‐specific peptidase 53 inhibits the occurrence and development of clear cell renal cell carcinoma through NF‐κB pathway inactivation
Cited by: 10
Author(s): Dingwen Gui, Zhufeng Dong, Wei Peng, Weidong Jiang, Geng Huang, Gang Liu, Zhihua Ye, Yang Wang, Zuwei Xu, Jinlun Fu, Shuai Luo, Yunfei Zhao
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.644261

Using Cell Type–Specific Genes to Identify Cell-Type Transitions Between Different in vitro Culture Conditions
Cited by: 0
Author(s): Xuelin He, Li Liu, Min Zheng, Chao Wu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-97129-2

Genotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populations
Cited by: 1
Author(s): Sridevi Padakanti, Khong-Loon Tiong, Yanbin Chen, Chen‐Hsiang Yeang
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.4039

Transcriptomic heterogeneity of driver gene mutations reveals novel mutual exclusivity and improves exploration of functional associations
Cited by: 0
Author(s): Yujia Lan, Wei Liu, Wanmei Zhang, Jing Hu, Xiaojing Zhu, Linyun Wan, Aditya Suru, Yanyan Ping, Yun Xiao
Software Mentions: 1
Published: over 5 years ago

10.1530/REP-21-0209

Effect of in vitro growth on mouse oocyte competency, mitochondria and transcriptome
Cited by: 6
Author(s): Tomoya Takashima, Tsubasa Fujimaru, Yayoi Obata
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.5563

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO2 vent
Cited by: 16
Author(s): Sven Uthicke, Nandan P. Deshpande, Michelle Liddy, Frances Patel, Miles D. Lamare, Marc R. Wilkins
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0155616

Massive Shift in Gene Expression during Transitions between Developmental Stages of the Gall Midge, Mayetiola Destructor
Cited by: 7
Author(s): Ming‐Shun Chen, Sanzhen Liu, Haiyan Wang, Xiaoyan Cheng, Mustapha El Bouhssini, R. Jeff Whitworth
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0157383

Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space
Cited by: 46
Author(s): Marinella Marzano, Bruno Fosso, Caterina Manzari, Francesco Grieco, Marianna Intranuovo, Giuseppe Cozzi, Giuseppina Mulè, Gaetano Scioscia, Gabriel Valiente, Apollonia Tullo, Elisabetta Sbisà, Graziano Pesole, Mónica Santamaría
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0236069

Circular RNA expression profiling reveals that circ-PLXNA1 functions in duck adipocyte differentiation
Cited by: 17
Author(s): Laidi Wang, Wenshuang Liang, Shasha Wang, Zhixiu Wang, Hao Bai, Yong Jiang, Yue Bi, Guohong Chen, Guobin Chang
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.201900354

Sequence and expression levels of circular RNAs in progenitor cell types during mouse corticogenesis
Cited by: 9
Author(s): Martina Dori, Leila Haj Abdullah Alieh, Daniel Cavalli, Simone Massalini, Mathias Lesche, Andreas Dahl, Federico Calegari
Software Mentions: 1
Published: over 7 years ago

10.1002/pld3.101

Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA‐dominated PHAS loci
Cited by: 14
Author(s): Seth Polydore, Alice Lunardon, Michael J. Axtell
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0244856

Influence of graphene on the multiple metabolic pathways of Zea mays roots based on transcriptome analysis
Cited by: 21
Author(s): Zhiwen Chen, Jianguo Zhao, Jie Song, Shenghua Han, Yifei Du, Yuying Qiao, Zehui Liu, Jun Qiao, Weijia Li, Jingwei Li, Haiyan Wang, Bengang Xing, Pan Qin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0173991

The duplication mutation of Quebec platelet disorder dysregulates PLAU, but not C10orf55, selectively increasing production of normal PLAU transcripts by megakaryocytes but not granulocytes
Cited by: 17
Author(s): Catherine P.M. Hayward, Minggao Liang, Subia Tasneem, Asim Soomro, John S. Waye, Andrew D. Paterson, Georges E. Rivard, Michael D. Wilson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0168870

Phenotype and Tissue Expression as a Function of Genetic Risk in Polycystic Ovary Syndrome
Cited by: 39
Author(s): Cindy T. Pau, Tim Mosbruger, Richa Saxena, Corrine K. Welt
Software Mentions: 1
Published: almost 10 years ago

10.26508/lsa.202000668

The RECQL helicase prevents replication fork collapse during replication stress
Cited by: 4
Author(s): Bente Benedict, Marit Ae van Bueren, Frank Pa van Gemert, Cor Lieftink, Sergi Guerrero Llobet, Marcel A.T.M. van Vugt, Roderick L. Beijersbergen, Hein te Riele
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0222954

Impact of the severity of negative energy balance on gene expression in the subcutaneous adipose tissue of periparturient primiparous Holstein dairy cows: Identification of potential novel metabolic signals for the reproductive system
Cited by: 13
Author(s): Namya Mellouk, Christelle Ramé, Delphine Naquin, Yan Jaszczyszyn, Jean-Luc Touzé, Eric Briant, Daniel Guillaume, Theodoros Ntallaris, P. Humblot, Joëlle Dupont
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02190

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers
Cited by: 13
Author(s): Kaitlyn M. Ferguson, Megan E. Jacob, Casey M. Theriot, Benjamin J. Callahan, Timo Prange, Mark G. Papich, Derek M. Foster
Software Mentions: 1
Published: about 8 years ago

10.3390/life11060589

Comparative Physiological and Transcriptomic Profiling Offers Insight into the Sexual Dimorphism of Hepatic Metabolism in Size-Dimorphic Spotted Scat (Scatophagus argus)
Cited by: 6
Author(s): Huapu Chen, Dongneng Jiang, Zhiyuan Li, Yaorong Wang, Xiao Yang, Shuangfei Li, Shuisheng Li, Wei Yang, Guangli Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2017.00451

Reduced Intracellular c-di-GMP Content Increases Expression of Quorum Sensing-Regulated Genes in Pseudomonas aeruginosa
Cited by: 52
Author(s): Song Lin Chua, Yang Liu, Yingying Li, Hui Jun Ting, Gurjeet S. Kohli, Zhao Cai, Pipob Suwanchaikasem, Kelvin Kau Kit Goh, Sean Pin Ng, Tim Tolker‐Nielsen, Liang Yang, Michael Givskov
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.591926

GapB Is Involved in Biofilm Formation Dependent on LrgAB but Not the SinI/R System in Bacillus cereus 0-9
Cited by: 6
Author(s): Juanmei Zhang, Meng Li, Yubing Zhang, Lidan Sang, Qing Liu, Linlin Zhao, Fengying Liu, Gang Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12931-020-1295-4

Expression of SMARCD1 interacts with age in association with asthma control on inhaled corticosteroid therapy
Cited by: 4
Author(s): Michael J. McGeachie, Joanne E. Sordillo, Amber Dahlin, Alberta L. Wang, Sharon M. Lutz, Kelan G. Tantisira, Ronald Allan M Panganiban, Quan Lu, Satria Sajuthi, Cydney Urbanek, Rachel S. Kelly, Benjamin Saef, Celeste Eng, Sam S. Oh, Alvin T. Kho, Damien C. Croteau‐Chonka, Scott T. Weiss, Benjamin A. Raby, Angel C. Y. Mak, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold, Ann Chen Wu
Software Mentions: 1
Published: almost 7 years ago

10.15252/emmm.201606743

<scp>ROCK</scp> signaling promotes collagen remodeling to facilitate invasive pancreatic ductal adenocarcinoma tumor cell growth
Cited by: 100
Author(s): Nicola Rath, Jennifer P. Morton, Linda Julian, Lena Helbig, Shereen Kadir, Ewan J. McGhee, Kurt I. Anderson, Gabriela Kalna, Margaret Mullin, Andreia V. Pinho, Ilse Rooman, Michael S. Samuel, Michael F. Olson
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12931-020-01402-3

T2 and T17 cytokines alter the cargo and function of airway epithelium-derived extracellular vesicles
Cited by: 12
Author(s): Elisabeth Ax, Zala Jevnikar, Aleksander Cvjetkovic, Carina Malmhäll, Henric Olsson, Madeleine Rådinger, Cecilia Lässer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-01522-w

Dexamethasone rescues TGF-β1-mediated β2-adrenergic receptor dysfunction and attenuates phosphodiesterase 4D expression in human airway smooth muscle cells
Cited by: 7
Author(s): Elena Chung, Christie A. Ojiaku, Gaoyuan Cao, Vishal Parikh, B.T. Deeney, Shengjie Xu, Serena Wang, Reynold A. Panettieri, Cynthia Koziol‐White
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-021-01645-8

Qi-Long-Tian formula extract alleviates symptoms of acute high-altitude diseases via suppressing the inflammation responses in rat
Cited by: 7
Author(s): Xing Fu, Chunyan Yang, Bing Chen, Kexing Zeng, Siyuan Chen, Fujin Yi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2020.586946

ROP18-Mediated Transcriptional Reprogramming of HEK293T Cell Reveals New Roles of ROP18 in the Interplay Between Toxoplasma gondii and the Host Cell
Cited by: 6
Author(s): Jiexi Li, Jun-Jun He, Hany M. Elsheikha, Jun Ma, Xiaoqing Xu, Xingquan Zhu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0218674

Tumor- and cytokine-primed human natural killer cells exhibit distinct phenotypic and transcriptional signatures
Cited by: 25
Author(s): May Sabry, Agnieszka Zubiak, Simon Hood, Poppy Simmonds, Helena Arellano-Ballestero, Eily Cournoyer, Meghavi Mashar, A. Graham Pockley, Mark W. Lowdell
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.02489

Physiological and Pathological Transcriptional Activation of Endogenous Retroelements Assessed by RNA-Sequencing of B Lymphocytes
Cited by: 29
Author(s): Jan Attig, George R. Young, Jonathan P. Stoye, George Kassiotis
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.625928

The Dynamic Immune Response of Yellow Catfish (Pelteobagrus fulvidraco) Infected With Edwardsiella ictaluri Presenting the Inflammation Process
Cited by: 7
Author(s): Xu Zhou, Guirong Zhang, Wei Ji, Ze-Chao Shi, Xiao Ma, Zunlan Luo, Kai-Jian Wei
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-98108-3

Identification of candidate regulators of mandibular bone loss in FcγRIIB-/- Mice
Cited by: 5
Author(s): Nithidol Sakunrangsit, Jatuphol Pholtaisong, Jeerus Sucharitakul, Sasithorn Wanna-udom, Pinidphon Prombutara, Prapaporn Pisitkun, Asada Leelahavanichkul, Chatchawit Aporntewan, Matthew B. Greenblatt, Sutada Lotinun
Software Mentions: 1
Published: about 5 years ago

10.1186/s12977-016-0275-8

Innate immune defects in HIV permissive cell lines
Cited by: 17
Author(s): Antonio Rausell, Miguel Muñoz, Raquel Martínez, Thierry Roger, Amalio Telenti, Angela Ciuffi
Software Mentions: 1
Published: over 10 years ago

10.1186/s12977-018-0436-z

Proceedings of the Frontiers in Retrovirology Conference 2018
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 8 years ago

10.1186/s12935-021-01762-w

Three novel circRNAs upregulated in tissue and plasma from hepatocellular carcinoma patients and their regulatory network
Cited by: 10
Author(s): Lianghai Wang, Lisha Zhou, Jun Hou, Meng Ji, Ke-Chih Lin, Xiangwei Wu, Xueling Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12977-020-00533-1

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
Cited by: 18
Author(s): Nam Nguyen Quang, Sophie Goudey, Emmanuel Ségéral, Ammara Mohammad, Sophie Lemoine, Corinne Blugeon, Margaux Versapuech, Jean-Christophe Paillart, Clarisse Berlioz‐Torrent, Stéphane Emiliani, Sarah Gallois-Montbrun
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-98203-5

Macrophage autophagy protects against hepatocellular carcinogenesis in mice
Cited by: 12
Author(s): Anthony Deust, Marie-Noële Chobert, Vanessa Démontant, Guillaume Gricourt, Timothé Denaës, Allan Thiolat, Isaac Ruiz, Christophe Rodriguez, Jean‐Michel Pawlotsky, Fatima Teixeira-Clerc
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.022848

Spontaneous shaker rat mutant – a new model for X-linked tremor-ataxia
Cited by: 13
Author(s): Karla P. Figueroa, Sharan Paul, Tito Calì, Raffaele Lopreiato, Sukanya Karan, Martina Frizzarin, Darren Ames, Ginevra Zanni, Marisa Brini, Warunee Dansithong, Brett Milash, Daniel R. Scoles, Ernesto Carafoli, Stefan M. Pulst
Software Mentions: 1
Published: almost 11 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583