bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41396-020-00817-6

Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment
Cited by: 33
Author(s): Claus Pelikan, Kenneth Wasmund, Clemens Glombitza, Bela Hausmann, Craig W. Herbold, Mathias Flieder, Alexander Loy
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-019-0491-z

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota
Cited by: 36
Author(s): Luis H. Orellana, Ben Francis, Karen Krüger, Hanno Teeling, Marie-Caroline Müller, Bernhard M. Fuchs, Konstantinos T. Konstantinidis, Rudolf Amann
Software Mentions: 2
Published: about 7 years ago

10.1038/s41396-020-00828-3

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions
Cited by: 49
Author(s): Barbara Bayer, Mak A. Saito, Matthew R. McIlvin, Sebastian Lücker, Dawn M. Moran, Thomas S. Lankiewicz, Chris L. Dupont, Alyson E. Santoro
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13046-019-1242-8

Heart failure drug proscillaridin A targets MYC overexpressing leukemia through global loss of lysine acetylation
Cited by: 24
Author(s): Elodie M. Da Costa, Gregory Armaos, Gabrielle McInnes, Annie Beaudry, Gaël Moquin‐Beaudry, Virginie Bertrand-Lehouillier, Maxime Caron, Chantal Richer, Pascal St-Onge, Jeffrey R. Johnson, Nevan J. Krogan, Yuka Sai, Michael Downey, Moutih Rafei, Meaghan Boileau, Kolja Eppert, Ema Flores-Díaz, André Haman, Trang Hoang, Daniel Sinnett, Christian Beauséjour, Serge McGraw, Noël J.-M. Raynal
Software Mentions: 2
Published: over 7 years ago

10.1186/s13046-019-1438-y

Role of mitochondria and cardiolipins in growth inhibition of breast cancer cells by retinoic acid
Cited by: 8
Author(s): Mineko Terao, Laura Goracci, Valentina Celestini, Mami Kurosaki, Marco Bolis, Alessandra Di Veroli, Arianna Vallerga, Maddalena Fratelli, Monica Lupi, Alessandro Corbelli, Fabio Fiordaliso, Maurizio Giannı̀, Gabriela Paroni, Adriana Zanetti, Gabriele Cruciani, Enrico Garattini
Software Mentions: 2
Published: about 7 years ago

10.1038/s41388-021-01732-6

Proteasome 26S subunit, non-ATPases 1 (PSMD1) and 3 (PSMD3), play an oncogenic role in chronic myeloid leukemia by stabilizing nuclear factor-kappa B
Cited by: 20
Author(s): Alfonso E. Bencomo‐Alvarez, Andres J. Rubio, Idaly M. Olivas, Mayra A. Gonzalez, Rebecca Ellwood, Carme Ripoll Fiol, Christopher A. Eide, Joshua J. Lara, Christian Barreto‐Vargas, Luis F Jave-Suárez, Georgios Nteliopoulos, Alistair Reid, Dragana Milojković, Brian J. Druker, Jane F. Apperley, Jamshid S. Khorashad, Anna M. Eiring
Software Mentions: 2
Published: over 5 years ago

10.1038/s41388-021-01707-7

PPAR-gamma induced AKT3 expression increases levels of mitochondrial biogenesis driving prostate cancer
Cited by: 38
Author(s): Laura C.A. Galbraith, Ernest Mui, Colin Nixon, Ann Hedley, David Strachan, Gillian Mackay, David Sumpton, Owen J. Sansom, Hing Y. Leung
Software Mentions: 2
Published: over 5 years ago

10.1038/s41388-021-01656-1

LIMK1 promotes peritoneal metastasis of gastric cancer and is a therapeutic target
Cited by: 18
Author(s): Kang Xi, Weilin Li, Weixin Liu, Han Liang, Jingyu Deng, Jun Yu, Suisheng Zhao, Wei Kang, Ka Fai To, Philip Wai Yan Chiu, Guiying Wang, Enders Kwok Wai Ng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41388-021-01784-8

Targeting autocrine amphiregulin robustly and reproducibly inhibits ovarian cancer in a syngeneic model: roles for wildtype p53
Cited by: 7
Author(s): Moshit Lindzen, Soma Ghosh, Ashish Noronha, Diana Drago, Nishanth Belugali Nataraj, Orith Leitner, Sílvia Carvalho, Einav Zmora, Sivan Sapoznik, Keren Bahar Shany, Keren Levanon, Dan Aderka, Belinda Sánchez Ramírez, Maik Dahlhoff, Iain A. McNeish
Software Mentions: 2
Published: over 5 years ago

10.1093/jisesa/ieaa038

Effect of Winning Experience on Aggression Involving Dangerous Fighting Behavior in Anastatus disparis (Hymenoptera: Eupelmidae)
Cited by: 2
Author(s): Pengcheng Liu, Dejun Hao, Haoyuan Hu, Jian‐Rong Wei, Fan Wu, Jie Shen, Shen-Jia Xu, Qiyue Xie
Software Mentions: 2
Published: over 6 years ago

10.1038/oncsis.2017.56

Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma
Cited by: 41
Author(s): Marilena Lupu-Plesu, Audrey Claren, Sonia Martial, Ndiaye Pd, Kévin Lebrigand, Nicolas Pons, Damien Ambrosetti, Isabelle Peyrottes, J. Feuillade, J. Hérault, Maeva Dufies, J. Doyen, Gilles Pagès
Software Mentions: 2
Published: over 9 years ago

10.1038/s41389-020-0194-3

ATR is a MYB regulated gene and potential therapeutic target in adenoid cystic carcinoma
Cited by: 30
Author(s): Mattias K. Andersson, Giovanna Mangiapane, Paloma Tejera Nevado, Alexia Tsakaneli, Therese Carlsson, Gabriele Corda, Valentina Nieddu, Carla Abrahamian, Olesya Chayka, Lilam Rai, Michael J. Wick, Amanda J. Kedaigle, Göran Stenman, Arturo Sala
Software Mentions: 2
Published: almost 7 years ago

10.1080/2162402X.2020.1730538

Tumor endothelial cell up-regulation of IDO1 is an immunosuppressive feed-back mechanism that reduces the response to CD40-stimulating immunotherapy
Cited by: 21
Author(s): Maria Georganaki, Mohanraj Ramachandran, Sander Tuit, Nicolás Gonzalo Núñez, Alexandros Karampatzakis, Grammatiki Fotaki, Luuk van Hooren, Hua Huang, Roberta Lugano, Thomas Ulas, Aura Kaunisto, Eric C. Holland, Peter Ellmark, Sara M. Mangsbo, Joachim L. Schultze, Magnus Essand, Sònia Tugues, Anna Dimberg
Software Mentions: 2
Published: almost 7 years ago

10.1515/jib-2019-0005

Integrating Molecular Biology and Bioinformatics Education
Cited by: 20
Author(s): Boas Pucker, Hanna Marie Schilbert, Sina Franziska Schumacher
Software Mentions: 2
Published: over 7 years ago

10.1194/jlr.M093740

ApoC-III ASO promotes tissue LPL activity in the absence of apoE-mediated TRL clearance
Cited by: 45
Author(s): Bastian Ramms, Sohan Patel, Chelsea Nora, Ariane Pessentheiner, Max W. Chang, Courtney R. Green, Gregory J. Golden, Patrick Secrest, Ronald M. Krauss, Christian M. Metallo, Chris Benner, Veronica J. Alexander, Joseph L. Witztum, Sotirios Tsimikas, Jeffrey D. Esko, Philip L.S.M. Gordts
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jlr.2021.100096

PCSK9 is not secreted from mature differentiated intestinal cells
Cited by: 4
Author(s): François Marchand, Aurélie Thedrez, Damien Garçon, Audrey Ayer, Thibaud Sotin, Wieneke Dijk, Claire Blanchard, Gilliane Chadeuf, Lucie Arnaud, Mikaël Croyal, Laurianne Van Landeghem, Mélissa Touvron, Xavier Prieur, Anna Roubtsova, Nabil G. Seidah, Annik Prat, Bertrand Cariou, Cédric Le May
Software Mentions: 2
Published: almost 6 years ago

10.1099/jmm.0.000482

Salmonella DIVA vaccine reduces disease, colonization and shedding due to virulent S. Typhimurium infection in swine
Cited by: 17
Author(s): Bradley L. Bearson, Shawn M. D. Bearson, Brian W. Brunelle, Darrell O. Bayles, In Su Lee, Jalusa Deon Kich
Software Mentions: 2
Published: over 9 years ago

10.1007/s10735-020-09926-0

Transferrin improved the generation of cardiomyocyte from human pluripotent stem cells for myocardial infarction repair
Cited by: 8
Author(s): Fengzhi Zhang, Hui Qiu, Xiaohui Dong, Chunlan Wang, Jie Na, Jin Zhou, Changyong Wang
Software Mentions: 2
Published: about 6 years ago

10.1007/s00109-020-01989-6

Long-term effects of empagliflozin on excitation-contraction-coupling in human induced pluripotent stem cell cardiomyocytes
Cited by: 9
Author(s): Steffen Pabel, Florian Reetz, Nataliya Dybkova, Orr Shomroni, Gabriela Salinas, Julian Mustroph, K Hammer, Gerd Hasenfuß, Nazha Hamdani, Lars S. Maier, Katrin Streckfuß‐Bömeke, Samuel Sossalla
Software Mentions: 2
Published: about 6 years ago

10.3892/or.2019.7300

In�vivo effects of mutant RHOA on tumor formation in an orthotopic inoculation model
Cited by: 2
Author(s): Takashi Nishizawa, Kiyotaka Nakano, Etsuko Fujii, Daisuke Komura, Yoshie Kuroiwa, Chisako Ishimaru, Makoto Monnai, Hiroyuki Aburatani, Shumpei Ishikawa, Masami Suzuki
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.49551

Ribosome biogenesis restricts innate immune responses to virus infection and DNA
Cited by: 49
Author(s): Christopher Bianco, Ian Mohr
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.52976

Selective egg cell polyspermy bypasses the triploid block
Cited by: 15
Author(s): Yanbo Mao, Alexander Gabel, Thomas Nakel, Prisca Viehöver, Thomas Baum, Dawit G. Tekleyohans, Dieu Vo, Ivo Große, Rita Groß‐Hardt
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.29959

Subcellular analysis of pigeon hair cells implicates vesicular trafficking in cuticulosome formation and maintenance
Cited by: 9
Author(s): Simon Nimpf, E. Pascal Malkemper, Mattias Lauwers, Lyubov Ushakova, Grégory Nordmann, Andrea Wenninger-Weinzierl, Thomas R Burkard, Sonja Jacob, Thomas Heuser, Guenter P. Resch, David A. Keays
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.62375

Heterochromatin-dependent transcription of satellite DNAs in the Drosophila melanogaster female germline
Cited by: 18
Author(s): Xiaolu Wei, Danna G. Eickbush, Iain Speece, Amanda M. Larracuente
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.49708

GC content shapes mRNA storage and decay in human cells
Cited by: 100
Author(s): Maïté Courel, Yves Clément, Clémentine Bossevain, Dominika Foretek, Olivia Vidal Cruchez, Yi Zhou, Marianne Bénard, Marie‐Noëlle Benassy, Michel Kress, Caroline Vindry, Michèle Ernoult‐Lange, Christophe Antoniewski, Antonin Morillon, Patrick Brest, Arnaud Hubstenberger, Hugues Roest Crollius, Nancy Standart, Dominique Weil
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.29702

Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism
Cited by: 62
Author(s): William Putzbach, Quan Gao, Monal Patel, Stijn van Dongen, Ashley Haluck-Kangas, Aishe A. Sarshad, Elizabeth T. Bartom, Kwang Youn Kim, Denise M. Scholtens, Markus Hafner, Jonathan C. Zhao, Andrea E. Murmann, Marcus E. Peter
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.44667

Astrocyte morphogenesis is dependent on BDNF signaling via astrocytic TrkB.T1
Cited by: 92
Author(s): Leanne M. Holt, Raymundo Hernandez, Natasha L. Pacheco, Beatriz Torres Ceja, Muhannah Hossain, Michelle L. Olsen
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.47791

Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1
Cited by: 59
Author(s): Anna E. Masser, Wenjing Kang, Joydeep Roy, Jayasankar Mohanakrishnan Kaimal, Jany Quintana-Cordero, Marc R. Friedländer, Claes Andréasson
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.47870

Altered gating of Kv1.4 in the nucleus accumbens suppresses motivation for reward
Cited by: 7
Author(s): Bernadette O’Donovan, Adewale Adeluyi, E. L. Anderson, Robert D. Cole, Jill Turner, Pavel I. Ortinski
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.32018

Inhibition of oxidative stress in cholinergic projection neurons fully rescues aging-associated olfactory circuit degeneration in Drosophila
Cited by: 20
Author(s): Ashiq Hussain, Atefeh Pooryasin, Mo Zhang, Laura F. Loschek, Marco La Fortezza, Anja Friedrich, Catherine Blais, Habibe K. Üçpunar, Vicente A. Yépez, Martin Lehmann, Nicolas Gompel, Julien Gagneur, Stephan J. Sigrist, Ilona C. Grunwald Kadow
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.33962

Drosophila Fezf coordinates laminar-specific connectivity through cell-intrinsic and cell-extrinsic mechanisms
Cited by: 28
Author(s): Jing Peng, Ivan J. Santiago, Curie Ahn, Burak Gür, C. Kimberly Tsui, Zhixiao Su, Chengpei Xu, Aziz Karakhanyan, Marion Silies, Matthew Y. Pecot
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.47430

TLE3 loss confers AR inhibitor resistance by facilitating GR-mediated human prostate cancer cell growth
Cited by: 21
Author(s): Sander Palit, Daniël J. Vis, Suzan Stelloo, Cor Lieftink, Stefan Prekovic, Elise M. Bekers, Ingrid Hofland, Tonći Šuštić, Liesanne Wolters, Roderick L. Beijersbergen, Andries M. Bergman, Balázs Győrffy, Lodewyk F.A. Wessels, Wilbert Zwart, Michiel S. van der Heijden
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.47678

Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer
Cited by: 42
Author(s): Jennifer Munkley, Ling Li, Subha Krishnan, Gerald Hysenaj, Emma Scott, Caroline Dalgliesh, Htoo Zarni Oo, Teresa Maia, Kathleen Cheung, Ingrid Ehrmann, Karen E. Livermore, Hanna Zielińska, Oliver Thompson, Bridget Knight, Paul McCullagh, John McGrath, Malcolm Crundwell, Lorna W. Harries, Mads Daugaard, Simon Cockell, Nuno L. Barbosa‐Morais, Sebastian Oltean, David Elliott
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.54877

Endogenous itaconate is not required for particulate matter-induced NRF2 expression or inflammatory response
Cited by: 29
Author(s): K. Sun, Yan Li, Angelo Y. Meliton, P.S. Woods, Lucas Kimmig, Rengül Cetin-Atalay, Robert B. Hamanaka, Gökhan M. Mutlu
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.34081

Tri-methylation of histone H3 lysine 4 facilitates gene expression in ageing cells
Cited by: 64
Author(s): Cristina Cruz, Monica Della Rosa, Christel Krueger, Qian Gao, Dorottya Horkai, Michelle King, Lucy Field, Jonathan Houseley
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.38517

Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription
Cited by: 24
Author(s): Clémence Hocquet, Xavier Robellet, Laurent Modolo, Xi‐Ming Sun, Claire Burny, Sara Cuylen-Haering, Esther Toselli, Sandra Clauder‐Münster, Lars M. Steinmetz, Christian H. Haering, Samuel Marguerat, Pascal Bernard
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.53381

Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation
Cited by: 58
Author(s): Tim D.D. Somerville, Giulia Biffi, Juliane Daßler-Plenker, Stella K. Hur, Xueyan He, Krysten E. Vance, Koji Miyabayashi, Yali Xu, Diogo Maia-Silva, Olaf Klingbeil, Osama E. Demerdash, Jonathan Preall, Michael A. Hollingsworth, Mikala Egeblad, David A. Tuveson, Christopher R. Vakoc
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.64611

Dichloroacetate reverses sepsis-induced hepatic metabolic dysfunction
Cited by: 25
Author(s): Rabina Mainali, Manal Zabalawi, David Long, Nancy L. Buechler, Ellen E. Quillen, Chia-Chi Chuang Key, Xuewei Zhu, John S. Parks, Cristina M. Furdui, Peter W. Stacpoole, Jennifer Martinez, Charles E. McCall, Matthew Quinn
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.59711

High neural activity accelerates the decline of cognitive plasticity with age in Caenorhabditis elegans
Cited by: 11
Author(s): Qiaochu Li, Daniel-Cosmin Marcu, Ottavia Palazzo, Frances Turner, Declan King, Tara L. Spires‐Jones, Melanie I. Stefan, Karl Emanuel Busch
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.23670

DNA methylation and gene expression changes derived from assisted reproductive technologies can be decreased by reproductive fluids
Cited by: 101
Author(s): Sebastián Cánovas, Elena Ivanova, Raquel Romar, Soledad García-Martínez, Cristina Soriano‐Úbeda, Francisco Alberto García–Vázquez, Heba Saadeh, Simon Andrews, Gavin Kelsey, Pilar Coy
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.67250

Cardiac pathologies in mouse loss of imprinting models are due to misexpression of H19 long noncoding RNA
Cited by: 6
Author(s): Ki-Sun Park, Beenish Rahat, Hyung Chul Lee, Zu‐Xi Yu, Jacob Noeker, Apratim Mitra, Connor M. Kean, Russell H. Knutsen, Danielle Springer, Claudia Gebert, Beth A. Kozel, Karl Pfeifer
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.66921

Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
Cited by: 16
Author(s): Muhammad Arif, Martina Klevstig, Rui Benfeitas, Stephen Doran, Hasan Türkez, Mathias Uhlén, Maryam Clausen, Johannes Wikström, Damla Etal, Cheng Cheng Zhang, Malin Levin, Adil Mardinoğlu, Jan Borén
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.63595

Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation
Cited by: 21
Author(s): Pengfei Xu, Haoze V Yu, Kuo-Chang Tseng, Mackenzie Flath, Péter Fábián, Neil Segil, J. Gage Crump
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.17290

Functional CRISPR screening identifies the ufmylation pathway as a regulator of SQSTM1/p62
Cited by: 114
Author(s): Rowena DeJesus, Francesca Moretti, Gregory McAllister, Zuncai Wang, Philip S. Bergman, Shanming Liu, Elizabeth Frias, John Alford, John S. Reece‐Hoyes, Alicia Lindeman, Jennifer Kelliher, Carsten Russ, Judith Knehr, Walter Carbone, Martin Beibel, Guglielmo Roma, Aylwin Ng, John A. Tallarico, Jeffery A. Porter, Ramnik J. Xavier, Craig Mickanin, Leon O. Murphy, Gregory R. Hoffman, Beat Nyfeler
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.40532

Downsizing the molecular spring of the giant protein titin reveals that skeletal muscle titin determines passive stiffness and drives longitudinal hypertrophy
Cited by: 55
Author(s): Ambjorn Brynnel, Yaeren Hernandez, Balázs Kiss, Johan Lindqvist, Maya Adler, Justin Kolb, Robbert van der Pijl, Jochen Gohlke, Joshua Strom, John E. Smith, Coen A.C. Ottenheijm, Henk Granzier
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.57858

Functional interrogation of HOXA9 regulome in MLLr leukemia via reporter-based CRISPR/Cas9 screen
Cited by: 21
Author(s): Hao Zhang, Yang Zhang, Xinyue Zhou, Shaela Wright, Judith Hyle, Lianzhong Zhao, Jie An, Xujie Zhao, Ying Shao, Beisi Xu, Hyeong-Min Lee, Taosheng Chen, Yang Zhou, Xiang Chen, Rui Lu, Chunliang Li
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.70948

Inducible and reversible inhibition of miRNA-mediated gene repression in vivo
Cited by: 17
Author(s): Gaspare La Rocca, Bryan King, Bing Shui, Xiaohua Li, Minsi Zhang, Kemal M. Akat, Paul Ogrodowski, Chiara Mastroleo, Kevin Chen, Vincenzo Cavalieri, Yilun Ma, Viviana Anelli, Doron Betel, Joana A. Vidigal, Thomas Tuschl, Gunter Meister, Craig B. Thompson, Tullia Lindsten, Kevin M. Haigis, Andrea Ventura
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.56934

Critical role of WNK1 in MYC-dependent early mouse thymocyte development
Cited by: 6
Author(s): Robert Köchl, Lesley Vanes, Miriam Llorián Sopeña, Probir Chakravarty, Harald Hartweger, Kathryn Fountain, Andrea J. White, Jennifer E. Cowan, Graham Anderson, Victor L. J. Tybulewicz
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.67275

Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila
Cited by: 10
Author(s): Luke S Tain, Robert Sehlke, Ralf Leslie Meilenbrock, Thomas Leech, Jonathan Paulitz, Manopriya Chokkalingam, Nagarjuna Nagaraj, Sebastian Grönke, Jenny Fröhlich, Ilian Atanassov, Matthias Mann, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.35618

Striking circadian neuron diversity and cycling of Drosophila alternative splicing
Cited by: 24
Author(s): Qingqing Wang, Katharine C. Abruzzi, Michael Rosbash, Donald C. Rio
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.43002

Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness
Cited by: 88
Author(s): Blake Tye, Nicoletta Commins, Lillia V. Ryazanova, Martin Wühr, Michael Springer, David Pincus, L. Stirling Churchman
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.63299

HDAC1 SUMOylation promotes Argonaute-directed transcriptional silencing in C. elegans
Cited by: 14
Author(s): Hee-Sun Kim, Yue-He Ding, Gangming Zhang, Yan Ya, Darryl Conte, Meng‐Qiu Dong, Craig C. Mello
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.28366

The ESRP1-GPR137 axis contributes to intestinal pathogenesis
Cited by: 22
Author(s): Lukas F. Mager, Viktor H. Koelzer, Regula Stuber, Lester Thoo, Irene Keller, Ivonne Koeck, Maya Langenegger, Cédric Simillion, S. Pfister, Martin Faderl, Vera Genitsch, Irina Tcymbarevich, Pascal Juillerat, Xiaohong Li, Yu Xia, Eva Karamitopoulou, Ruth Lyck, Inti Zlobec, Siegfried Hapfelmeier, Rémy Bruggmann, Kathy D. McCoy, Andrew J. Macpherson, Christoph Müller, Bruce Beutler, Philippe Krebs
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.25293

Major satellite repeat RNA stabilize heterochromatin retention of Suv39h enzymes by RNA-nucleosome association and RNA:DNA hybrid formation
Cited by: 118
Author(s): Oscar Velázquez Camacho, Carmen Galán, Kalina Swist-Rosowska, Reagan W. Ching, Michael Gamalinda, Fethullah Karabiber, Inti A. De La Rosa-Velázquez, Bettina Engist, Birgit Koschorz, Nicholas Shukeir, Megumi Onishi-Seebacher, Suzanne van de Nobelen, Thomas Jenuwein
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.58795

Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation
Cited by: 53
Author(s): M Regina Scarpin, Samuel Leiboff, Jacob O. Brunkard
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.69396

Repression of CHROMOMETHYLASE 3 prevents epigenetic collateral damage in Arabidopsis
Cited by: 12
Author(s): Ranjith Papareddy, Katalin Páldi, Anna D Smolka, Patrick Hüther, Claude Becker, Michael D. Nodine
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.63291

Ablation of STAT3 in Purkinje cells reorganizes cerebellar synaptic plasticity in long-term fear memory network
Cited by: 19
Author(s): Jeong Kyu Han, Sun‐Ho Kwon, Yong Gyu Kim, Jaeyong Choi, Jong‐Il Kim, Yong-Seok Lee, Sang Kyu Ye, Sang Jeong Kim
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.47542

Lola regulates Drosophila adult midgut homeostasis via non-canonical hippo signaling
Cited by: 4
Author(s): Xue Hou, Shimin Wang, Yi Lu, Wentao Yu, Pengyue Li, Dan Jiang, Tong Guo, Mengjie Li, Jinhui Li, Jinjin Xu, Wenqing Wu, Margaret S. Ho, Lei Zhang
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.33361

G9a regulates temporal preimplantation developmental program and lineage segregation in blastocyst
Cited by: 27
Author(s): J. Ż̷ylicz, Maud Borensztein, Frederick C K Wong, Yun Huang, Caroline Lee, Sabine Dietmann, M. Azim Surani
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.33221

Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni
Cited by: 51
Author(s): George R. Wendt, Julie Collins, Jimin Pei, Mark S. Pearson, Hayley M. Bennett, Alex Loukas, Matthew Berriman, Nick V. Grishin, James J. Collins
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.30918

The somatically generated portion of T cell receptor CDR3α contributes to the MHC allele specificity of the T cell receptor
Cited by: 17
Author(s): Philippa Marrack, S. Harsha Krovi, Daniel Silberman, Janicé White, Eleanor Kushnir, Maki Nakayama, J. Crooks, Thomas Danhorn, Sonia M. Leach, Randy Anselment, James Scott‐Browne, Laurent Gapin, John W. Kappler
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.61265

Increased processing of SINE B2 ncRNAs unveils a novel type of transcriptome deregulation in amyloid beta neuropathology
Cited by: 7
Author(s): Yijun Cheng, Luke Saville, Babita Gollen, Christopher Isaac, Abel Belay, Jogender Mehla, Krishna Patel, Nehal Thakor, Majid H. Mohajerani, Athanasios Zovoilis
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.45009

Seminal fluid compromises visual perception in honeybee queens reducing their survival during additional mating flights
Cited by: 18
Author(s): Joanito Liberti, Julia Görner, Mat Welch, Ryan Dosselli, Morten Schiøtt, Yuri Ogawa, Ian Castleden, Jan M. Hemmi, Barbara Baer-Imhoof, Jacobus J. Boomsma, Boris Baer
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.51607

Axon TRAP reveals learning-associated alterations in cortical axonal mRNAs in the lateral amygdala
Cited by: 47
Author(s): Linnaea Ostroff, Emanuela Santini, Robert M. Sears, Zachary Deane, Rahul N. Kanadia, Joseph E. LeDoux, Tenzin Lhakhang, Aristotelis Tsirigos, Adriana Heguy, Eric Klann
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.32833

Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
Cited by: 33
Author(s): Almary Guerra, Raoul Freitas Vale Germano, Oliver A. Stone, Rima Arnaout, Stefan Guenther, Suchit Ahuja, Verónica Uribe, Benoît Vanhollebeke, Didier Y. R. Stainier, Sven Reischauer
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.28620

Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons
Cited by: 83
Author(s): Kevin D. Monahan, Ira Schieren, Jonah Cheung, Alice Mumbey-Wafula, Edwin S. Monuki, Stavros Lomvardas
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.54493

Dissecting the phenotypic and functional heterogeneity of mouse inflammatory osteoclasts by the expression of Cx3cr1
Cited by: 37
Author(s): Maria‐Bernadette Madel, Lidia Ibáñez, Thomas Ciucci, James P. Halper, Matthieu Rouleau, Antoine Boutin, Christophe Hue, Isabelle Duroux-Richard, Florence Apparailly, Henri‐Jean Garchon, Abdelilah Wakkach, Claudine Blin-Wakkach
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.67776

Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree
Cited by: 20
Author(s): Audrey M. Hendley, Rao Av, Laura Leonhardt, Sudipta Ashe, Jennifer A. Smith, Simone Giacometti, Xianlu L. Peng, Honglin Jiang, David I. Berrios, Mathias Pawlak, Lucia Y Li, Jonghyun Lee, Eric A. Collisson, Mark S. Anderson, Gabriela K. Fragiadakis, Jen Jen Yeh, Chun Jimmie Ye, Grace Kim, Valerie M. Weaver, Matthias Hebrok
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.37202

tp53 deficiency causes a wide tumor spectrum and increases embryonal rhabdomyosarcoma metastasis in zebrafish
Cited by: 47
Author(s): Myron S. Ignatius, Madeline Hayes, Finola Moore, Qin Tang, Sara P. Garcia, Patrick R. Blackburn, Kunal Baxi, Long Wang, Alexander Jin, Ashwin Ramakrishnan, Sophia Reeder, Yidong Chen, G. Petur Nielsen, Eleanor Chen, Robert P. Hasserjian, Franck Tirode, Stephen C. Ekker, David M. Langenau
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.68806

Visualizing formation of the active site in the mitochondrial ribosome
Cited by: 19
Author(s): Viswanathan Chandrasekaran, Nirupa Desai, Nick Burton, Hongxin Yang, Jonathan Price, Eric A. Miska, V. Ramakrishnan
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.56337

KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage
Cited by: 68
Author(s): Gernot Wolf, Alberto De Iaco, Ming-an Sun, Melania Bruno, Matthew Tinkham, Don Hoang, Apratim Mitra, Sherry Ralls, Didier Trono, Todd S. Macfarlan
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.44795

A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis
Cited by: 47
Author(s): Ritu Gupta, Adhish Walvekar, Shun Liang, Zeenat Rashida, Premal Shah, Sunil Laxman
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.11275

Comparative analysis of viral RNA signatures on different RIG-I-like receptors
Cited by: 79
Author(s): Raul Y. Sanchez David, Chantal Combredet, Odile Sismeiro, Marie‐Agnès Dillies, Bernd Jagla, Jean‐Yves Coppée, Marie Mura, Mathilde Guerbois Galla, Philippe Desprès, Frédéric Tangy, Anastassia V. Komarova
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.58565

Enhanced insulin signalling ameliorates C9orf72 hexanucleotide repeat expansion toxicity in Drosophila
Cited by: 15
Author(s): Magda L. Atilano, Sebastian Grönke, Teresa Niccoli, Liam Kempthorne, Oliver Hahn, Javier Morón-Oset, Oliver Hendrich, Miranda C. Dyson, Mirjam Lisette Adams, Alexander Hull, Marie-Therese Salcher-Konrad, Amy E. Monaghan, Magda Bictash, Idoia Glaria, Adrian M. Isaacs, Linda Partridge
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.61880

NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA
Cited by: 23
Author(s): Zachary F. Mandell, Reid T. Oshiro, Alexander V. Yakhnin, Rishi K. Vishwakarma, Mikhail Kashlev, Daniel B. Kearns, Paul Babitzke
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.17548

Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage
Cited by: 208
Author(s): Caroline Townsend Stork, M Bocek, Madzia P Crossley, Julie Sollier, Lionel A. Sanz, Frédéric Chédin, Tomek Swigut, Karlene A. Cimprich
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.65615

CD8+ T cell self-tolerance permits responsiveness but limits tissue damage
Cited by: 5
Author(s): Emily Nestor Truckenbrod, Kristina S. Burrack, Todd P. Knutson, Henrique Borges da Silva, Katharine E. Block, Stephen O’Flanagan, Katie R Stagliano, Arthur A. Hurwitz, Ross B. Fulton, Kristin R. Renkema, Stephen C. Jameson
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.64806

Anti-ferroptotic mechanism of IL4i1-mediated amino acid metabolism
Cited by: 50
Author(s): Leonie Zeitler, Alessandra Fiore, Claudia Meyer, Marion Russier, Gaia Zanella, Sabine Suppmann, Marco Gargaro, Sachdev S. Sidhu, Somasekar Seshagiri, Caspar Ohnmacht, Thomas Köcher, Francesca Fallarino, Andreas Linkermann, Peter J. Murray
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.56075

Srsf10 and the minor spliceosome control tissue-specific and dynamic SR protein expression
Cited by: 16
Author(s): Stefan Meinke, Gesine Goldammer, A Ioana Weber, Victor Tarabykin, Alexander Neumann, Marco Preußner
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms22063045

Secondary Metabolism and Defense Responses Are Differently Regulated in Two Grapevine Cultivars during Ripening
Cited by: 9
Author(s): Giorgio Gambino, Paolo Boccacci, Chiara Pagliarani, Irene Perrone, Danila Cuozzo, F. Mannini, Ivana Gribaudo
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22063094

Transcriptional Changes in Potato Sprouts upon Interaction with Rhizoctonia solani Indicate Pathogen-Induced Interference in the Defence Pathways of Potato
Cited by: 11
Author(s): Rita Zrenner, Bart Verwaaijen, Franziska Genzel, Burkhardt Flemer, Rita Grosch
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22063108

LATS1 Is a Mediator of Melanogenesis in Response to Oxidative Stress and Regulator of Melanoma Growth
Cited by: 3
Author(s): Urszula Kazimierczak, Ewelina Dondajewska, M Zajaczkowska, Marianna Karwacka, Tomasz Kolenda, Andrzej Maćkiewicz
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22063133

Transcriptome Analysis Unravels Key Factors Involved in Response to Potassium Deficiency and Feedback Regulation of K+ Uptake in Cotton Roots
Cited by: 10
Author(s): Dou-Dou Yang, Fangjun Li, Fei Yi, A. Egrinya Eneji, Xiaoli Tian, Zhaohu Li
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22073616

Silencing of Sphingosine kinase 1 Affects Maturation Pathways in Mouse Neonatal Cardiomyocytes
Cited by: 2
Author(s): Ewelina Józefczuk, Piotr Szczepaniak, Tomasz J. Guzik, Mateusz Siedliński
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22084204

Multi–Omics Analysis of Key microRNA–mRNA Metabolic Regulatory Networks in Skeletal Muscle of Obese Rabbits
Cited by: 6
Author(s): Yanhong Li, Jie Wang, Mauricio A. Elzo, Mingchuan Gan, Tao Tang, Jiahao Shao, Tianfu Lai, Yuan Ma, Xianbo Jia, Songjia Lai
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22094315

Barley Seeds miRNome Stability during Long-Term Storage and Aging
Cited by: 6
Author(s): Marta Puchta, Jolanta Groszyk, Magdalena Małecka, Marek Koter, Maciej Niedzielski, Monika Rakoczy-Trojanowska, Maja Boczkowska
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22094476

Identification of Compounds with Potential Therapeutic Uses from Sweet Pepper (Capsicum annuum L.) Fruits and Their Modulation by Nitric Oxide (NO)
Cited by: 22
Author(s): Lucía Guevara, María Ángeles Domínguez-Anaya, Alba Ortigosa, Salvador González‐Gordo, Caridad Díaz, Francisca Vicente, Francisco J. Corpas, J Palacio, José M. Palma
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22105079

Implication of a Key Region of Six Bacillus cereus Genes Involved in Siroheme Synthesis, Nitrite Reductase Production and Iron Cluster Repair in the Bacterial Response to Nitric Oxide Stress
Cited by: 3
Author(s): Constance Porrini, Cyprien Guérin, Seav-Ly Tran, Rozenn Dervyn, Pierre Nicolas, Nalini Ramarao
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22115448

MMP-9 Deletion Attenuates Arteriovenous Fistula Neointima through Reduced Perioperative Vascular Inflammation
Cited by: 10
Author(s): Yu Chung Shih, Po Yuan Chen, Tai Ming Ko, Po Hsun Huang, Hsu Ma, Der Cherng Tarng
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22126537

Expression Profiling and Bioinformatics Analysis of CircRNA in Mice Brain Infected with Rabies Virus
Cited by: 8
Author(s): Wen Zhao, Jingyin Su, Ningning Wang, Naiyu Zhao, Shuo Su
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22137129

Comparative Transcriptome Analysis Reveals Genetic Mechanisms of Sugarcane Aphid Resistance in Grain Sorghum
Cited by: 9
Author(s): Desalegn D. Serba, Xiaoxi Meng, James C. Schnable, Elfadil M. A. Bashir, J.P. Michaud, P. V. Vara Prasad, Ramasamy Perumal
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22136663

Expression Profile of New Marker Genes Involved in Differentiation of Canine Adipose-Derived Stem Cells into Osteoblasts
Cited by: 2
Author(s): Maurycy Jankowski, Mariusz Kaczmarek, Grzegorz Wąsiatycz, Claudia Dompe, Paul Mozdziak, J. M. Jaśkowski, Hanna Piotrowska‐Kempisty, Bartosz Kempisty
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147406

Inactivation of EMILIN-1 by Proteolysis and Secretion in Small Extracellular Vesicles Favors Melanoma Progression and Metastasis
Cited by: 10
Author(s): Ana Amor López, Marina S. Mazariegos, Alessandra Capuano, Pilar Ximénez-Embún, Marta Hergueta-Redondo, Juan A. Recio, Eva Muñoz, Fátima Al‐Shahrour, Javier Muñoz, Diego Megı́as, Roberto Doliana, Paola Spessotto, Héctor Peinado
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147454

Chromatin Dynamics and Gene Expression Response to Heat Exposure in Field-Conditioned versus Laboratory-Cultured Nematostella vectensis
Cited by: 4
Author(s): Eviatar Weizman, Mieka Rinsky, Noa Simon‐Blecher, Sarit Lampert-Karako, Orly Yaron, Ann M. Tarrant, Oren Levy
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147614

PLEKHA8P1 Promotes Tumor Progression and Indicates Poor Prognosis of Liver Cancer
Cited by: 6
Author(s): Jiyeon Lee, Ji-Hyun Hwang, Harim Chun, Wonjin Woo, Seajin Oh, Jungmin Choi, Lark Kyun Kim
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147596

Integration of Transcriptome and Metabolome Reveals the Genes and Metabolites Involved in Bifidobacterium bifidum Biofilm Formation
Cited by: 15
Author(s): Zongmin Liu, Lingzhi Li, Zhifeng Fang, Yuan‐Kun Lee, Jianxin Zhao, Hao Zhang, Wei Chen, Haitao Li, Wenwei Liu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147629

Whole Blood Transcriptome Characterization of 3xTg-AD Mouse and Its Modulation by Transcranial Direct Current Stimulation (tDCS)
Cited by: 3
Author(s): Chiara Magri, Erika Vitali, Sara Cocco, Edoardo Giacopuzzi, Marco Rinaudo, Paolo Martini, Alessandro Barbon, Claudio Grassi, Massimo Gennarelli
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147440

HopA1 Effector from Pseudomonas syringae pv syringae Strain 61 Affects NMD Processes and Elicits Effector-Triggered Immunity
Cited by: 4
Author(s): Shraddha K. Dahale, Daipayan Ghosh, Kishor D. Ingole, Anup Chugani, Sang Hee Kim, Saikat Bhattacharjee
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22147442

Transcriptome Analysis and miRNA Target Profiling at Various Stages of Root-Knot Nematode Meloidogyne incognita Development for Identification of Potential Regulatory Networks
Cited by: 4
Author(s): Vimalraj Mani, Kijong Lee, Bum-Soo Hahn
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22157813

Bmi1 Augments Proliferation and Survival of Cortical Bone-Derived Stem Cells after Injury through Novel Epigenetic Signaling via Histone 3 Regulation
Cited by: 1
Author(s): Lindsay Kraus, Chris Bryan, Marcus Wagner, Tabito Kino, M. M. Gunchenko, Wassy Jalal, Mohsin Khan, Sadia Mohsin
Software Mentions: 2
Published: over 5 years ago

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