bioconductor: ConsensusClusterPlus | Projects

10.3389/fimmu.2021.722479

Human Mitochondrial Ribosomal RNA Modification-Based Classification Contributes to Discriminate the Prognosis and Immunotherapy Response of Glioma Patients
Cited by: 1
Author(s): Peng Wang, Jingying Li, Minxian Wu, Minghua Ye, Kai Huang, Xiang Yang Zhu
Software Mentions: 6
Published: about 3 years ago

10.3389/fimmu.2020.00714

Characterization of the Impact of Daclizumab Beta on Circulating Natural Killer Cells by Mass Cytometry
Cited by: 7
Author(s): Thanmayi Ranganath, Laura J. Simpson, Anne-Maud Ferreira, Christof Seiler, Elena Vendrame, Nancy Q. Zhao, Jason D. Fontenot, Susan Holmes, Catherine A. Blish
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2021.607090

Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 12
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.632934

RNA N6-Methyladenosine Regulator-Mediated Methylation Modifications Pattern and Immune Infiltration Features in Glioblastoma
Cited by: 19
Author(s): Yimin Pan, Kai Xiao, Yue Li, Yuzhe Li, Qing Liu
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.544610

Identification of Four Immune Subtypes in Bladder Cancer Based on Immune Gene Sets
Cited by: 25
Author(s): Chaozhi Tang, Jiakang Ma, Xiuli Liu, Zhengchun Liu
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2020.579868

Hypoxia-Associated Prognostic Markers and Competing Endogenous RNA Co-Expression Networks in Breast Cancer
Cited by: 20
Author(s): Peng Gong, You-Cheng Shao, Shu‐Chun Huang, Yifan Zeng, Xianglin Yuan, Jingjing Xu, Weinan Yin, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-020-67016-3

Recursive Consensus Clustering for novel subtype discovery from transcriptome data
Cited by: 5
Author(s): Pranali Sonpatki, Nameeta Shah
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-91382-1

RUNX1 and REXO2 are associated with the heterogeneity and prognosis of IDH wild type lower grade glioma
Cited by: 11
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-90538-3

Identification of prognostic biomarkers related to the tumor microenvironment in thyroid carcinoma
Cited by: 6
Author(s): Junwei Du, Guoquan Li, Yang-sen Li, Xinguang Qiu
Software Mentions: 6
Published: over 3 years ago

10.7150/ijbs.61441

Multi-omics Analysis of Ferroptosis Regulation Patterns and Characterization of Tumor Microenvironment in Patients with Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Wenchao Gu, Mai Kim, Lei Wang, Zongcheng Yang, Takahito Nakajima, Yoshito Tsushima
Software Mentions: 6
Published: almost 4 years ago

10.1155/2021/5583400

Identification and Validation of Autophagy-Related Gene Nomograms to Predict the Prognostic Value of Patients with Cervical Cancer
Cited by: 3
Author(s): Jinqun Jiang, Hongxing Xu, Yihao Wang, Hai Lü
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.00444

Multi-Omics Integration Reveals a Competitive Endogenous RNAs Network for the Identification of Progression Biomarkers and the Stratification of Patients Diagnosed With Nephroblastoma
Cited by: 2
Author(s): Jingbo Wang, Yuan Wang, Han Liang, Mohamed Shahen, Chaofeng Hu, Furong Li
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2021.639059

Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-20471-5

Development of an Immune-Pathology Informed Radiomics Model for Non-Small Cell Lung Cancer
Cited by: 104
Author(s): Chad Tang, Brian P. Hobbs, Ahmed M. Amer, Li Xiao, Carmen Behrens, Jaime Rodriguez Canales, Edwin Parra Cuentas, Pamela Villalobos, David Fried, Joe Y. Chang, David S. Hong, James Welsh, Boris Sepesi, Laurence Edward Court, Ignacio I. Wistuba, Eugene J. Koay
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2021.592107

Identification of Expression Patterns and Potential Prognostic Significance of m5C-Related Regulators in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Zhaolong Han, Biao Yang, Yu Wang, Xiuxia Zeng, Zhen Tian
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2020.579709

Potential of Immune-Related Genes as Biomarkers for Diagnosis and Subtype Classification of Preeclampsia
Cited by: 8
Author(s): Ying Wang, Zhen Li, Guanhua Song, Jun Wang
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2021.619821

Comprehensive Profiling Reveals Distinct Microenvironment and Metabolism Characterization of Lung Adenocarcinoma
Cited by: 3
Author(s): Li Chang, Chen Tian, Yangyang Liu, Jinyan Liang, Yue Zeng, Qifan Yang, Yuting Liu, Di Wu, Jingjing Wu, Juanjuan Wang, Kai Zhang, Fei Gu, Yue Hu, Li Liu
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.553045

m6A Reader HNRNPA2B1 Promotes Esophageal Cancer Progression via Up-Regulation of ACLY and ACC1
Cited by: 62
Author(s): Huimin Guo, Bei Wang, Kaiyue Xu, Ling Nie, Yao Fu, Zhangding Wang, Qiang Wang, Shouyu Wang, Xiaoping Zou
Software Mentions: 5
Published: about 4 years ago

10.3389/fonc.2020.00769

Dysregulated m6A-Related Regulators Are Associated With Tumor Metastasis and Poor Prognosis in Osteosarcoma
Cited by: 54
Author(s): Jianhao Li, Benchen Rao, Jie Yang, Liwen Liu, Mengling Huang, Xin Liu, Guangying Cui, Chao Li, Qicai Han, Hao Yang, Xichun Cui, Ranran Sun
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.616507

Molecular Subtypes Based on the Stemness Index Predict Prognosis in Glioma Patients
Cited by: 7
Author(s): Jun Tan, Hecheng Zhu, Guihua Tang, Hongwei Liu, Siyi Wanggou, Yudong Cao, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Ming Zhao, Chao Ren, Xingjun Jiang, Yin Wu
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/3909416

Recognition of Immune Microenvironment Landscape and Immune-Related Prognostic Genes in Breast Cancer
Cited by: 7
Author(s): Huiling Wang, Sylvaine You, Meng Fang, Qian Fang
Software Mentions: 5
Published: about 4 years ago

10.1155/2021/9954370

Identification of the Ferroptosis-Associated Gene Signature to Predict the Prognostic Status of Endometrial Carcinoma Patients
Cited by: 5
Author(s): Jinlong Qin, Xiaowen Shao, Lei Wu, Hongling Du
Software Mentions: 5
Published: about 3 years ago

10.1155/2020/8832739

Identification of 5-Gene Signature Improves Lung Adenocarcinoma Prognostic Stratification Based on Differential Expression Invasion Genes of Molecular Subtypes
Cited by: 19
Author(s): Zhaoxu Zheng, Weijie Deng, Jiansheng Yang
Software Mentions: 5
Published: almost 4 years ago

10.1002/cam4.3343

Identification of a novel prognostic DNA methylation signature for lung adenocarcinoma based on consensus clustering method
Cited by: 5
Author(s): Qidong Cai, Boxue He, Hui Xie, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Zhenyu Zhao, Xiang Wang
Software Mentions: 5
Published: about 4 years ago

10.3389/fgene.2020.00994

m6A RNA Methylation Regulators Participate in the Malignant Progression and Have Clinical Prognostic Value in Lung Adenocarcinoma
Cited by: 42
Author(s): Fangwei Li, Hong Wang, Huirong Huang, Li Zhang, Dan Wang, Yixin Wan
Software Mentions: 5
Published: about 4 years ago

10.1186/s13578-020-00517-w

Identification of predictors based on drug targets highlights accurate treatment of goserelin in breast and prostate cancer
Cited by: 6
Author(s): Yue Zhao, Huimin Sun, Jianzhong Zheng, Chen Shao, Dongwei Zhang
Software Mentions: 5
Published: almost 4 years ago

10.1155/2021/8810849

Development of an Autophagy-Related Gene Prognostic Model and Nomogram for Estimating Renal Clear Cell Carcinoma Survival
Cited by: 7
Author(s): Ying Wang, Yinhui Yao, Jingyi Zhao, Chunhua Cai, Junhui Hu, Yan‐Wu Zhao
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-018-2204-4

polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance
Cited by: 1
Author(s): Katherine Eason, Gift Nyamundanda, Anguraj Sadanandam
Software Mentions: 5
Published: over 6 years ago

10.1530/ERC-19-0474

A xenograft and cell line model of SDH-deficient pheochromocytoma derived from Sdhb+/− rats
Cited by: 15
Author(s): James F. Powers, Brent Cochran, James D. Baleja, Hadley D. Sikes, Andrew Pattison, Xue Zhang, Inna Lomakin, Annette Shepard-Barry, Karel Pacák, Sun Jin Moon, Troy F. Langford, Kassi T. Stein, Richard W. Tothill, Ying-Bin Ouyang, Arthur S. Tischler
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.11494

The landscape of tumors-infiltrate immune cells in papillary thyroid carcinoma and its prognostic value
Cited by: 2
Author(s): Yanyi Huang, Tao Yi, Yushu Liu, Mengyun Yan, Xinli Peng, Yunxia Lv
Software Mentions: 5
Published: over 3 years ago

10.1172/jci.insight.148435

A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients
Cited by: 70
Author(s): Samantha M. Morrissey, Anne E Geller, Xiaoling Hu, David Tieri, Chuan‐Fan Ding, Christopher K Klaes, Elizabeth A. Cooke, Matthew R Woeste, Zachary C Martin, Oscar Chen, Sarah A. Bush, Huang‐Ge Zhang, Rodrigo Cavallazzi, Sean P. Clifford, James Chen, Smita Ghare, Shirish Barve, Lu Cai, Maiying Kong, Eric C. Rouchka, Kenneth R. McLeish, Silvia M. Uriarte, Corey T. Watson, Jiapeng Huang, Jun Yan
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.691161

Identification of Novel Metabolism-Associated Subtypes for Pancreatic Cancer to Establish an Eighteen-Gene Risk Prediction Model
Cited by: 6
Author(s): Yang Gao, Enchong Zhang, Xiang Fei, Lingming Kong, Peng Liu, Xiaodong Tan
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.645482

Glycolysis Define Two Prognostic Subgroups of Lung Adenocarcinoma With Different Mutation Characteristics and Immune Infiltration Signatures
Cited by: 3
Author(s): Huo Chen, Mengyu Zhang, Rui Li, Tingting Liu, Jianping Li, Yi-Qing Qu
Software Mentions: 5
Published: over 3 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: over 3 years ago

10.1186/s12957-021-02367-3

Comprehensive analysis of angiogenesis subtype of squamous cell carcinoma
Cited by: 3
Author(s): Fanglu Qin, Sheng-hua Lin, Kun Deng, Junqi Qin, Zhanyu Xu, Liqiang Yuan, Jiangbo Wei, Yu Sun, Tiaozhan Zheng, Shikang Li
Software Mentions: 5
Published: about 3 years ago

10.3389/fcell.2021.727935

Uncovering the Association Between m5C Regulator-Mediated Methylation Modification Patterns and Tumour Microenvironment Infiltration Characteristics in Hepatocellular Carcinoma
Cited by: 13
Author(s): Xinyu Gu, Haibo Zhou, Qingfei Chu, Qiuxian Zheng, Jing Wang, Haihong Zhu
Software Mentions: 5
Published: about 3 years ago

10.1186/s12957-021-02246-x

Human nuclear receptors (NRs) genes have prognostic significance in hepatocellular carcinoma patients
Cited by: 9
Author(s): Guangtao Sun, Kai Sun, Chao Shen
Software Mentions: 5
Published: over 3 years ago

10.1186/s13073-020-00749-y

Epigenetic deregulation of lamina-associated domains in Hutchinson-Gilford progeria syndrome
Cited by: 36
Author(s): Florian Köhler, Felix Bormann, Günter Raddatz, Julian Gutekunst, Nick Gilbert, Tanja Musch, Anke S. Lonsdorf, Sylvia Erhardt, Frank Lyko, Manuel Rodríguez-Paredes
Software Mentions: 5
Published: over 4 years ago

10.1053/j.gastro.2020.09.043

Targeting DNA Damage Response and Replication Stress in Pancreatic Cancer
Cited by: 73
Author(s): Stephan Dreyer, Rosanna Upstill-Goddard, Viola Paulus-Hock, Clara Paris, Eirini-Maria Lampraki, Eloïse Dray, Bryan Serrels, Giuseppina Caligiuri, Selma Rebus, Dennis Plenker, Zachary Galluzzo, Holly Brunton, Richard Cunningham, Mathias Tesson, Craig Nourse, Ulla-Maja Bailey, Marc D. Jones, Kim Moran-Jones, Derek W. Wright, Fraser Duthie, Karin A. Oien, Lisa Evers, Colin McKay, Grant A. McGregor, Aditi Gulati, Rachel Brough, Ilirjana Bajrami, Stephen J. Pettitt, Michele L. Dziubinski, Juliana Candido, Frances R. Balkwill, Simon T. Barry, Robert Grützmann, Lola Rahib, Amber Johns, Marina Pajic, Fieke E. M. Froeling, Philip Beer, Elizabeth A. Musgrove, Gloria M. Petersen, Alan Ashworth, Margaret C. Frame, Howard C. Crawford, Diane M. Simeone, Chris Lord, Debabrata Mukhopadhyay, Christian Pilarsky, David A. Tuveson, Susanna L. Cooke, Nigel B. Jamieson, Jennifer P. Morton, Owen J. Sansom, Peter J. Bailey, Andrew V. Biankin, David K. Chang, Sarah E. Allison, Peter J. Bailey, Ulla-Maja Bailey, Andrew V. Biankin, Dario Beraldi, Holly Brunton, Giuseppina Caligiuri, Euan Cameron, David K. Chang, Susanna L. Cooke, Richard Cunningham, Stephan Dreyer, Paul Grimwood, Shane Kelly, Eirini-Maria Lampraki, John L. Marshall, Sancha Martin, Brian McDade, Daniel L. McElroy, Elizabeth A. Musgrove, Craig Nourse, Viola Paulus-Hock, Donna T. Ramsay, Rosanna Upstill-Goddard, Derek W. Wright, Marc D. Jones, Lisa Evers, Selma Rebus, Lola Rahib, Bryan Serrels, Jane Hair, Nigel B. Jamieson, Colin McKay, Paul Westwood, Nicola Williams, Fraser Duthie, Andrew V. Biankin, Amber Johns, Amanda Mawson, David K. Chang, Christopher J. Scarlett, Mary-Anne L. Brancato, Sarah J. Rowe, Skye Simpson, Mona Martyn-Smith, Michelle T. Thomas, Lorraine A. Chantrill, Venessa T. Chin, Angela Chou, Mark J. Cowley, Jeremy L. Humphris, Marc D. Jones, R. Scott Mead, Adnan Nagrial, Marina Pajic, Jessica Pettit, Mark Pinese, Ilse Rooman, Jianmin Wu, Tao Jiang, Renee DiPietro, Clare Watson, Angela Steinmann, Hong Ching Lee, Rachel Wong, Andreia V. Pinho, Marc Giry-Laterrière, Roger J. Daly, Elizabeth A. Musgrove, Robert L. Sutherland, Sean M. Grimmond, Nicola Waddell, Karin S. Kassahn, David Miller, Peter J. Wilson, Ann‐Marie Patch, Sarah Song, Ivon Harliwong, Senel Idrisoglu, Craig Nourse, Ehsan Nourbakhsh, Suzanne Manning, Shivangi Wani, Milena Gongora, Matthew Anderson, Oliver Holmes, Conrad Leonard, Darrin Taylor, Scott Wood, Christina Xu, Kátia Nones, J. Lynn Fink, Angelika N. Christ, Tim Bruxner, Nicole Cloonan, Felicity Newell, John V. Pearson, Peter J. Bailey, Michael C. Quinn, Shivashankar H. Nagaraj, Stephen H. Kazakoff, Nick M. Waddell, Keerthana Krisnan, Kelly Quek, David Wood, Jaswinder S. Samra, Anthony J. Gill, Nick Pavlakis, Alex Guminski, Christopher W. Toon, Ray Asghari, Neil D. Merrett, Darren Pavey, Amitabha Das, Peter H. Cosman, Kasim Ismail, Chelsie O’Connnor, Vincent Lam, Duncan McLeod, Henry Pleass, A. J. Richardson, Virginia James, James G. Kench, Caroline Cooper, David Joseph, Charbel Sandroussi, Michael Crawford, James Gallagher, Michael Texler, Cindy Forest, Andrew Laycock, Krishna Epari, Mo Ballal, David Fletcher, Sanjay Mukhedkar, Nigel Spry, Bastiaan DeBoer, Ming Gene Chai, Nikolajs Zeps, Maria Beilin, Kynan Feeney, Nan Q. Nguyen, Andrew Ruszkiewicz, Chris Worthley, Chuan Ping Tan, Tamara Debrencini, John Chen, Mark E. Brooke-Smith, Virginia Papangelis, H.H.K. Tang, Andrew P. Barbour, Andrew D. Clouston, Patrick Martin, Thomas O’Rourke, Amy Chiang, J. Fawcett, Kellee Slater, Shinn Yeung, Michael Hatzifotis, Peter Hodgkinson, Christopher Christophi, Mehrdad Nikfarjam, A. Mountain, Victorian Cancer Biobank, James R. Eshleman, Ralph H. Hruban, Anirban Maitra, Christine A. Iacobuzio‐Donahue, Richard D. Schulick, Christopher L. Wolfgang, Richard A. Morgan, Mary Hodgin, Aldo Scarpa, Rita T. Lawlor, Stefania Beghelli, Vincenzo Corbo, Maria Scardoni, Claudio Bassi, Margaret A. Tempero, Andrew V. Biankin, Sean M. Grimmond, David K. Chang, Elizabeth A. Musgrove, Marc D. Jones, Craig Nourse, Nigel B. Jamieson, Janet Graham, Andrew V. Biankin, David K. Chang, Nigel B. Jamieson, Janet Graham
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-019-5887-7

Refinement of breast cancer molecular classification by miRNA expression profiles
Cited by: 59
Author(s): Rolf Søkilde, Helena Persson, Anna Ehinger, Anna Chiara Pirona, Mårten Fernö, Cecilia Hegardt, Christer Larsson, Niklas Loman, Martin Malmberg, Lisa Rydén, Lao H. Saal, Åke Borg, Johan Vallon-Christerson, Carlos Rovira
Software Mentions: 5
Published: over 5 years ago

10.1186/s40478-020-01010-8

Single-cell mass cytometry reveals complex myeloid cell composition in active lesions of progressive multiple sclerosis
Cited by: 34
Author(s): Chotima Böttcher, Marlijn van der Poel, Camila Fernández-Zapata, Stephan Schlickeiser, Julia Koehler Leman, Cheng-Chih Hsiao, Mark R. Mizee, Adelia, Maria C. J. Vincenten, Désirée Kunkel, Inge Huitinga, Jörg Hamann, Josef Priller
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2020.00863

N6-Methyladenosine RNA Methylation Regulators Have Clinical Prognostic Values in Hepatocellular Carcinoma
Cited by: 4
Author(s): Wei Liu, Cuiqing Zhong, Deguan Lv, Mengjie Tang, Feng Xie
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2021.557477

Unraveling Heterogeneity of Tumor Cells and Microenvironment and Its Clinical Implications for Triple Negative Breast Cancer
Cited by: 12
Author(s): Ke Jiang, Mengting Dong, Chunyang Li, Jiayu Sheng
Software Mentions: 5
Published: over 3 years ago

10.1186/s12967-020-02512-8

Comprehensive profiling of immune-related genes in soft tissue sarcoma patients
Cited by: 15
Author(s): Chuan Hu, Bin Chen, Zhangheng Huang, Chuan Liu, Lin Ye, Cailin Wang, Yuexin Tong, Jiaxin Yang, Chengliang Zhao
Software Mentions: 5
Published: about 4 years ago

10.1002/cam4.3367

Identification of small molecule drugs and development of a novel autophagy‐related prognostic signature for kidney renal clear cell carcinoma
Cited by: 9
Author(s): Qianwei Xing, Chengjian Ji, Bingye Zhu, Rong Cong
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0216834

TCGA based integrated genomic analyses of ceRNA network and novel subtypes revealing potential biomarkers for the prognosis and target therapy of tongue squamous cell carcinoma
Cited by: 19
Author(s): Zaiye Li, Canhua Jiang, Yongxiang Yuan
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.102579

Discovering master regulators in hepatocellular carcinoma: one novel MR, SEC14L2 inhibits cancer cells
Cited by: 14
Author(s): Zhihui Li, Yi Liu, Guoyan Tian, Jianyue Wu, Anqian Lu, Jin Chen, Beibei Xu, Junping Shi, Jin Yang
Software Mentions: 4
Published: almost 5 years ago

10.1002/2211-5463.12934

Novel immune subtypes of lung adenocarcinoma identified through bioinformatic analysis
Cited by: 4
Author(s): Fanglu Qin, Zhanyu Xu, Liqiang Yuan, Wenjie Chen, Jiangbo Wei, Yu Sun, Shikang Li
Software Mentions: 4
Published: about 4 years ago

10.3389/fcell.2021.687756

m6A Regulator-Associated Modification Patterns and Immune Infiltration of the Tumor Microenvironment in Hepatocarcinoma
Cited by: 16
Author(s): Jianhao Li, Weiwei Wang, Yubing Zhou, Liwen Liu, Guizhen Zhang, Kelei Guan, Xichun Cui, Xin Liu, Mengling Huang, Guangying Cui, Ranran Sun
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/9587084

Development of an Individualized Immune Prognostic Signature for Clear Cell Renal Cell Carcinoma through the Identification of Differential Immune Genes
Cited by: 1
Author(s): Jianfeng Wang, Chaozhi Tang, Xiaowu Liu
Software Mentions: 4
Published: over 3 years ago

10.1007/s00401-017-1773-z

Comprehensive molecular characterisation of epilepsy-associated glioneuronal tumours
Cited by: 50
Author(s): T. J. Stone, Angus Keeley, Alex Virasami, William Harkness, Martin Tisdall, Elisa Izquierdo, Alice Gutteridge, Tony Brooks, Mark Kristiansen, Jane Chalker, Lisa Wilkhu, William Mifsud, John Apps, Maria Thom, Michael Hubank, Tim Forshew, J. Helen Cross, Darren Hargrave, Jonathan Ham, Thomas S. Jacques
Software Mentions: 4
Published: about 7 years ago

10.3389/fcell.2021.713569

Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma
Cited by: 11
Author(s): Zaizhu Han, Yun Chen, Pan Shen, Lan Gong
Software Mentions: 4
Published: about 3 years ago

10.3389/fcell.2021.694633

Bioinformatic Analyses Identify a Prognostic Autophagy-Related Long Non-coding RNA Signature Associated With Immune Microenvironment in Diffuse Gliomas
Cited by: 10
Author(s): Shengchao Xu, Lu Tang, Zhixiong Liu, Kui Yang, Quan Cheng
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.8873

Bioinformatics analyses of retinoblastoma reveal the retinoblastoma progression subtypes
Cited by: 6
Author(s): Manjing Cao, Sha Wang, Jing Zou, Wanpeng Wang
Software Mentions: 4
Published: over 4 years ago

10.1186/s13048-017-0323-6

Bioinformatics analysis to screen the key prognostic genes in ovarian cancer
Cited by: 26
Author(s): Li Li, Shengyun Cai, Shengnan Liu, Hao Feng, Junjie Zhang
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102459

Multi-omics analysis reveals epithelial-mesenchymal transition-related gene FOXM1 as a novel prognostic biomarker in clear cell renal carcinoma
Cited by: 13
Author(s): Song Jing, Fangzhou Song, Kun Liu, Wanfeng Zhang, Ruihan Luo, Yongyao Tang
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.634162

Significance of RNA N6-Methyladenosine Regulators in the Diagnosis and Subtype Classification of Childhood Asthma Using the Gene Expression Omnibus Database
Cited by: 32
Author(s): Bing Dai, Feifei Sun, Xuxu Cai, Chunlu Li, Henan Liu, Yunxiao Shang
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2021.671179

Significance of N6-Methyladenosine RNA Methylation Regulators in Immune Infiltrates of Ovarian Cancer
Cited by: 9
Author(s): Jing Gu, Fangfang Bi
Software Mentions: 4
Published: over 3 years ago

10.1186/s40164-020-00165-3

Microenvironment characterization and multi-omics signatures related to prognosis and immunotherapy response of hepatocellular carcinoma
Cited by: 45
Author(s): Furong Liu, Lu Qin, Zhibin Liao, Jia Song, Chaoyi Yuan, Yachong Liu, Yu Wang, Heze Xu, Qiaofeng Zhang, Yigang Pei, Hongwei Zhang, Yonglong Pan, Xiaoping Chen, Zhanguo Zhang, Wanguang Zhang, Bixiang Zhang
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2020.595657

Immune-Related Gene-Based Novel Subtypes to Establish a Model Predicting the Risk of Prostate Cancer
Cited by: 14
Author(s): Enchong Zhang, Jieqian He, Hui Zhang, Liping Shan, Hongliang Wu, Mo Zhang, Yi Song
Software Mentions: 4
Published: about 4 years ago

10.18632/aging.103254

Alterations in glycolytic/cholesterogenic gene expression in hepatocellular carcinoma
Cited by: 13
Author(s): Jianwen Jiang, Qiuxian Zheng, Weiwei Zhu, Xinhua Chen, Haifeng Lü, Deying Chen, Hua Zhang, Min Shao, Lin Zhou, Shusen Zheng
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2021.685992

The Immune Subtypes and Landscape of Gastric Cancer and to Predict Based on the Whole-Slide Images Using Deep Learning
Cited by: 28
Author(s): Yan Chen, Zhiwei Sun, Wanlan Chen, Changyan Liu, Ruoyang Chai, Jingjing Ding, Wen Liu, Xianzhen Feng, Jun Zhou, Xiaoyi Shen, Shan Huang, Zhongqing Xu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12935-020-01238-3

Identification of a m6A RNA methylation regulators-based signature for predicting the prognosis of clear cell renal carcinoma
Cited by: 34
Author(s): Jing Chen, Kun Yu, Guansheng Zhong, Wei Shen
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2021.676922

DNA Damage Repair Status Predicts Opposite Clinical Prognosis Immunotherapy and Non-Immunotherapy in Hepatocellular Carcinoma
Cited by: 11
Author(s): Yunfei Chen, Wei Xu, Xiaofang Deng, Yu Zhang, Rui Liao, Youzan Li, Hongji Yang, Kai Chen
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2020.00829

Treated HIV Infection Alters Phenotype but Not HIV-Specific Function of Peripheral Blood Natural Killer Cells
Cited by: 8
Author(s): Nancy Q. Zhao, Anne-Maud Ferreira, Philip Grant, Susan Holmes, Catherine A. Blish
Software Mentions: 4
Published: over 4 years ago

10.3389/fmed.2020.615981

DNA Repair-Based Gene Expression Signature and Distinct Molecular Subtypes for Prediction of Clinical Outcomes in Lung Adenocarcinoma
Cited by: 8
Author(s): Bin Hu, Di Liu, Yinqiang Liu, Zhixi Li
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmolb.2021.648012

Artificial Intelligence in Epigenetic Studies: Shedding Light on Rare Diseases
Cited by: 10
Author(s): Sandra Brasil, Cátia J. Neves, Tatiana Rijoff, Marta Falcão, Gonçalo Valadão, Paula A. Videira, Vanessa Ferreira
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/4582082

Identification of a Two-m6A RNA Methylation Regulator Risk Signature as an Independent Prognostic Biomarker in Papillary Renal Cell Carcinoma by Bioinformatic Analysis
Cited by: 5
Author(s): Fusheng Yang, Guojiang Zhao, Liyuan Ge, Yimeng Song, Kai Hong, Hongxian Zhang, Cheng Liu, Hong Peng, Lulin Ma
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2021.680918

Hippo Pathway Core Genes Based Prognostic Signature and Immune Infiltration Patterns in Lung Squamous Cell Carcinoma
Cited by: 26
Author(s): Chang Gu, Jiafei Chen, Xuening Dang, Chunji Chen, Zhenyu Huang, Weidong Shen, Xin Shi, Chenyang Dai, Chang Chen
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.704543

N6-Methyladenosine Regulators and Related LncRNAs Are Potential to be Prognostic Markers for Uveal Melanoma and Indicators of Tumor Microenvironment Remodeling
Cited by: 7
Author(s): Zhicheng Liu, Shanshan Li, Shan Huang, Tao Wang
Software Mentions: 4
Published: over 3 years ago

10.1186/s12967-020-02454-1

Comprehensive analysis and establishment of a prediction model of alternative splicing events reveal the prognostic predictor and immune microenvironment signatures in triple negative breast cancer
Cited by: 11
Author(s): Shanshan Yu, Chuan Hu, Lixiao Liu, Luya Cai, Xuedan Du, Qiongjie Yu, Fan Lin, Jinduo Zhao, Ye Zhao, Cheng Zhang, Xuan Li, Wenfeng Li
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2021.636870

CXCL12 and CD3E as Indicators for Tumor Microenvironment Modulation in Bladder Cancer and Their Correlations With Immune Infiltration and Molecular Subtypes
Cited by: 15
Author(s): Yi Liu, Yucai Wu, PeiPei Zhang, Chaojie Xu, ZeSen Liu, ChaoJie He, Yiming Liu, Zhengjun Kang
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2020.541401

Prognosis Analysis and Validation of m6A Signature and Tumor Immune Microenvironment in Glioma
Cited by: 46
Author(s): Sheng Lin, Houshi Xu, Anke Zhang, Yunjia Ni, Yuanzhi Xu, Tong Meng, Mingjie Wang, Meiqing Lou
Software Mentions: 4
Published: about 4 years ago

10.3390/genes12091375

N6-Methyladenosine-Related lncRNA Signature Predicts the Overall Survival of Colorectal Cancer Patients
Cited by: 12
Author(s): Wei Song, Jun Ren, Wenzheng Yuan, Rensheng Xiang, Yuhang Ge, Tao Fu
Software Mentions: 4
Published: about 3 years ago

10.1186/s41065-020-00165-7

Defining muscle-invasive bladder cancer immunotypes by introducing tumor mutation burden, CD8+ T cells, and molecular subtypes
Cited by: 9
Author(s): Zihao Chen, Guojun Liu, Mikhail A. Bolkov, Khyber Shinwari, Irina A. Tuzankina, V. А. Chereshnev, Zhifeng Wang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s41065-021-00193-x

Identification of glioblastoma immune subtypes and immune landscape based on a large cohort
Cited by: 5
Author(s): Huiyuan Zhang, Ying Chen
Software Mentions: 4
Published: over 3 years ago

10.7150/jca.50462

Classification of Clear Cell Renal Cell Carcinoma based on Tumor Suppressor Genomic Profiling
Cited by: 2
Author(s): Weimin Zhong, Fengling Zhang, Chaoqun Huang, Yao Lin, Jian Huang
Software Mentions: 4
Published: almost 4 years ago

10.1111/jcmm.14830

Identification of immune‐enhanced molecular subtype associated with BRCA1 mutations, immune checkpoints and clinical outcome in ovarian carcinoma
Cited by: 23
Author(s): Mingjun Zheng, Yuexin Hu, Rui Gou, Ouxuan Liu, Xin Nie, Xiao Li, Qing Liu, Yingying Hao, Juanjuan Liu, Bei Lin
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-17298-x

NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma
Cited by: 59
Author(s): Kevin Brennan, June Ho Shin, Joshua K. Tay, Marcos Prunello, Andrew J. Gentles, John B. Sunwoo, Olivier Gevaert
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-55852-x

Multi-parameter immune profiling of peripheral blood mononuclear cells by multiplexed single-cell mass cytometry in patients with early multiple sclerosis
Cited by: 34
Author(s): Chotima Böttcher, Camila Fernández-Zapata, Stephan Schlickeiser, Désirée Kunkel, Axel Schulz, Henrik E. Mei, Carl Weidinger, René M. Gieß, Susanna Asseyer, Britta Siegmund, Friedemann Paul, Klemens Ruprecht, Josef Priller
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-56146-y

Long-term epilepsy-associated tumors: transcriptional signatures reflect clinical course
Cited by: 10
Author(s): Daniel Delev, Karam Daka, Sabrina Heynckes, Annette Gaebelein, Pamela Franco, Dietmar Pfeifer, Marco Prinz, Oliver Schnell, Horst Urbach, Irina Mader, Jürgen Beck, Alexander Grote, Albert Becker, Dieter Henrik Heiland
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13287-020-01973-4

Development and validation of a novel stem cell subtype for bladder cancer based on stem genomic profiling
Cited by: 11
Author(s): Chaozhi Tang, Jiakang Ma, Xiuli Liu, Zhengchun Liu
Software Mentions: 4
Published: about 4 years ago

10.1186/s13075-020-02195-y

Increased serum calpain activity is associated with HMGB1 levels in systemic sclerosis
Cited by: 9
Author(s): Ji-Na Zheng, Yang Li, Yue-Mei Yan, Yong Yu, Wenqi Shao, Qiang Wang
Software Mentions: 4
Published: over 4 years ago

10.1038/s41389-021-00311-4

Single-cell RNA sequencing reveals that targeting HSP90 suppresses PDAC progression by restraining mitochondrial bioenergetics
Cited by: 8
Author(s): Li-Peng Hu, Kaixia Zhou, Yan‐Miao Huo, Dejun Liu, Qing Li, Minwei Yang, Peng Huang, Chunjie Xu, Guang-Ang Tian, Lishuang Yao, Xueli Zhang, Yahui Wang, Jun Li, Zhigang Zhang, Shu-Heng Jiang, Xin Xing, Xu Wang, Weiting Qin, Qin Yang
Software Mentions: 4
Published: over 3 years ago

10.1038/s42003-021-02674-1

Genomic characterization of rare molecular subclasses of hepatocellular carcinoma
Cited by: 4
Author(s): Jeffrey S. Damrauer, Markia A. Smith, Vonn Walter, Aatish Thennavan, Lisle E. Mose, Sara R. Selitsky, Katherine A. Hoadley
Software Mentions: 4
Published: about 3 years ago

10.7150/ijbs.62168

Identification and Characterization of Alcohol-related Hepatocellular Carcinoma Prognostic Subtypes based on an Integrative N6-methyladenosine methylation Model
Cited by: 11
Author(s): Yue Zhang, Fanhong Zeng, Min Zeng, Xu Han, Lei Cai, Jiajun Zhang, Jun Weng, Yi Gao
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020871

Diverse Evolution in 111 Plant Genomes Reveals Purifying and Dosage Balancing Selection Models for F-Box Genes
Cited by: 6
Author(s): Zhihua Hua
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2019.00786

Specific Glioma Prognostic Subtype Distinctions Based on DNA Methylation Patterns
Cited by: 15
Author(s): Xueran Chen, Chenggang Zhao, Zhiyang Zhao, Hongzhi Wang, Zhiyou Fang
Software Mentions: 3
Published: about 5 years ago

10.1002/1878-0261.12101

β-Catenin in desmoid-type fibromatosis: deep insights into the role of T41A and S45F mutations on protein structure and gene expression
Cited by: 27
Author(s): Chiara Colombo, Antonino Belfiore, Nicholas Paielli, Loris De Cecco, Silvana Canevari, Erik Laurini, Maurizio Fermeglia, Sabrina Pricl, Paolo Verderio, Stefano Bottelli, Marco Fiore, Silvia Stacchiotti, Elena Palassini, Alessandro Gronchi, Silvana Pilotti, Francesco Perrone
Software Mentions: 3
Published: about 7 years ago

10.3390/cancers12123685

Angiogenesis-Related Gene Expression Signatures Predicting Prognosis in Gastric Cancer Patients
Cited by: 24
Author(s): Haoyu Ren, Jiang Zhu, Haochen Yu, Alexandr V. Bazhin, C. Benedikt Westphalen, Bernhard W. Renz, Sven Jacob, Christopher Lampert, Jens Werner, Martin K. Angele, Florian Bösch
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms19113607

Methylation-Based Classification of Cervical Squamous Cell Carcinoma into Two New Subclasses Differing in Immune-Related Gene Expression
Cited by: 4
Author(s): Xia Li, Yunpeng Cai
Software Mentions: 3
Published: about 6 years ago

10.7150/ijbs.39046

Diagnostic, progressive and prognostic performance of m<sup>6</sup>A methylation RNA regulators in lung adenocarcinoma
Cited by: 38
Author(s): Zhizhi Zhuang, Liping Chen, Yuting Mao, Qun Zheng, Huiying Li, Yueyue Huang, Zijing Hu, Y. Jin
Software Mentions: 3
Published: almost 5 years ago

10.3389/fimmu.2021.659018

Immunological Biomarkers of Fatal COVID-19: A Study of 868 Patients
Cited by: 13
Author(s): Esperanza Martín-Sánchez, Juan-José Garcés, Catarina Maia, Susana Inogés, Ascensión López‐Díaz de Cerio, Francisco Carmona-Torre, Marta Marín-Oto, Félix Alegre, Eduardo Molano, Mirian Fernández-Alonso, Cristina Fernández Pérez, Cirino Botta, Aintzane Zabaleta, Ana B. Alcaide, Manuel F. Landecho, Marta Covela Rúa, Teresa Pérez-Warnisher, Laura Blanco, Sarai Sarvide, Amaia Vilas-Zornoza, Diego Alignani, Cristina Moreno, Iñigo Pineda, Miguel Sogbe, Josepmaría Argemi, Bruno Paiva, José Ramón Yuste
Software Mentions: 3
Published: over 3 years ago

10.1186/s12944-021-01475-z

Risk stratification of ST-segment elevation myocardial infarction (STEMI) patients using machine learning based on lipid profiles
Cited by: 12
Author(s): Yuzhou Xue, Jian Shen, Wang Hong, Wei Zhou, Zhenxian Xiang, Yuansong Zhu, Chuiguo Huang, Suxin Luo
Software Mentions: 3
Published: over 3 years ago

10.3389/fcell.2020.594112

Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
Cited by: 52
Author(s): Shengchao Xu, Lu Tang, Guo Dai, Chengke Luo, Zhixiong Liu
Software Mentions: 3
Published: about 4 years ago

10.1172/jci.insight.144913

MMP2 and TLRs modulate immune responses in the tumor microenvironment
Cited by: 21
Author(s): Luciana Rebiero Muniz-Bongers, Christopher B. McClain, Mansi Saxena, Gerold Bongers, Miriam Mérad, Nina Bhardwaj
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.629327

Identification and Validation of Ubiquitin-Specific Proteases as a Novel Prognostic Signature for Hepatocellular Carcinoma
Cited by: 11
Author(s): Wenkai Ni, Saiyan Bian, Mengqi Zhu, Qisheng Song, Jianping Zhang, Mingbing Xiao, Wenjie Zheng
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/8859590

m6A RNA Methylation Regulators Elicit Malignant Progression and Predict Clinical Outcome in Hepatocellular Carcinoma
Cited by: 4
Author(s): Wenli Li, Jun Liu, Zhu Ma, Xiaofeng Zhai, Baohua Cheng, Hetong Zhao
Software Mentions: 3
Published: over 3 years ago

10.7150/jca.52439

Novel biomarkers and prediction model for the pathological complete response to neoadjuvant treatment of triple-negative breast cancer
Cited by: 4
Author(s): Yiqun Han, Jiayu Wang, Binghe Xu
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13148-020-0811-1

Methylome and transcriptome analyses reveal insights into the epigenetic basis for the good survival of hypomethylated ER-positive breast cancer subtype
Cited by: 4
Author(s): Xiao-qiong Chen, Fan Zhang, Qichen Su, Chi Zeng, Fu-Hui Xiao, Yu Peng
Software Mentions: 3
Published: almost 5 years ago

Projects: bioconductor: ConsensusClusterPlus

Papers Mentioning ConsensusClusterPlus 313