Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CoRegNet
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CoRegNet
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
1 version
Latest release: 11 months ago
16,171 downloads total
Papers Mentioning CoRegNet 8
10.1093/bib/bbaa390
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modelingCited by: 13
Author(s): Vasundra Touré, Åsmund Flobak, Anna Niarakis, Steven Vercruysse, Martin Kuiper
Software Mentions: 9
Published: over 3 years ago
10.3390/jpm11080785
Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease MapCited by: 10
Author(s): Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, Valérie Chaudru, Mohamed Elati, Élisabeth Petit-Teixeira, Anna Niarakis
Software Mentions: 5
Published: about 3 years ago
10.1093/bib/bbw139
Gene co-expression analysis for functional classification and gene–disease predictionsCited by: 511
Author(s): Sipko van Dam, Urmo Võsa, Adriaan van der Graaf, Lude Franke, João Pedro de Magalhães
Software Mentions: 3
Published: over 7 years ago
10.1073/pnas.1900548116
Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeastCited by: 13
Author(s): Anthony Coutant, Katherine Roper, Daniel Trejo Baños, Dominique Bouthinon, Martin Carpenter, Jacek Grzebyta, Guillaume Santini, Henry Soldano, Mohamed Elati, Jan Ramon, Céline Rouveirol, Larisa Soldatova, Ross D. King
Software Mentions: 3
Published: about 5 years ago
10.1186/s12864-017-4389-8
Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phaseCited by: 9
Author(s): Akihiro Kuno, Ken Nishimura, Satoru Takahashi
Software Mentions: 3
Published: over 6 years ago
10.1093/bioinformatics/btv305
C<scp>o</scp>R<scp>eg</scp>N<scp>et</scp>: reconstruction and integrated analysis of co-regulatory networksCited by: 43
Author(s): Rémy Nicolle, François Radvanyi, Mohamed Elati
Software Mentions: 1
Published: over 9 years ago
10.1186/s12918-017-0507-0
Integrating transcriptional activity in genome-scale models of metabolismCited by: 18
Author(s): Daniel Trejo Baños, Pauline Trébulle, Mohamed Elati
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-020-73147-4
Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inferenceCited by: 12
Author(s): Naouel Zerrouk, Quentin Miagoux, Aurélien Dispot, Mohamed Elati, Anna Niarakis
Software Mentions: 1
Published: almost 4 years ago