Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: Cardinal

https://packages.ecosyste.ms/registries/bioconductor.org/packages/Cardinal

A mass spectrometry imaging toolbox for statistical analysis
1 version
Latest release: 10 months ago
23,062 downloads total

Papers Mentioning Cardinal 19

10.1093/bioinformatics/btx392

matter: an R package for rapid prototyping with larger-than-memory datasets on disk
Cited by: 4
Author(s): Kylie A Bemis, Olga Vitek
Software Mentions: 10
Published: about 7 years ago

Software solutions for evaluation and visualization of laser ablation inductively coupled plasma mass spectrometry imaging (LA-ICP-MSI) data: a short overview
Cited by: 30
Author(s): Ralf Weiskirchen, Sabine Weiskirchen, Philipp Kim, Robert Winkler
Software Mentions: 7
Published: over 5 years ago

10.1093/bioinformatics/btv146

<i>Cardinal</i>: an R package for statistical analysis of mass spectrometry-based imaging experiments
Cited by: 186
Author(s): Kyle D. Bemis, April Harry, Lívia S. Eberlin, Christina R. Ferreira, Stephanie M. W. Y. van de Ven, Parag Mallick, Mark L. Stolowitz, Olga Vitek
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj-cs.585

Contrast optimization of mass spectrometry imaging (MSI) data visualization by threshold intensity quantization (TrIQ)
Cited by: 0
Author(s): Ignacio Rosas-Román, Robert Winkler
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-021-84523-z

Detecting early myocardial ischemia in rat heart by MALDI imaging mass spectrometry
Cited by: 5
Author(s): Aleksandra Aljakna Khan, Nasim Bararpour, Marie Gorka, Timothée Joye, Sandrine Morel, Christophe Montessuit, Silke Grabherr, Tony Fracasso, Marc Augsburger, Brenda R. Kwak, Aurélien Thomas, Sara Sabatasso
Software Mentions: 3
Published: over 3 years ago

10.1002/mas.21602

Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry
Cited by: 127
Author(s): Nico Verbeeck, Richard M. Caprioli, Raf Van de Plas
Software Mentions: 3
Published: almost 5 years ago

10.1093/gigascience/giz143

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Cited by: 16
Author(s): Melanie Christine Föll, Lennart Moritz, Thomas Wollmann, Maren Nicole Stillger, Niklas Vockert, Martin Werner, Peter Bronsert, Karl Rohr, Björn Grüning, Oliver Schilling
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-18477-6

Fourier Transform Infrared Microscopy Enables Guidance of Automated Mass Spectrometry Imaging to Predefined Tissue Morphologies
Cited by: 33
Author(s): Jan Rabe, Denis A. Sammour, Sandra Schulz, Bogdan Munteanu, Martina Ott, Katharina Ochs, Peter Hohenberger, Alexander Marx, Michael Platten, Christiane A. Opitz, Daniel S. Ory, Carsten Hopf
Software Mentions: 2
Published: over 6 years ago

10.1007/s00216-019-01826-x

Improved matrix coating for positive- and negative-ion-mode MALDI-TOF imaging of lipids in blood vessel tissues
Cited by: 13
Author(s): Christina Meisenbichler, Christian Doppler, David Bernhard, Thomas Müller
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0243472

Transparent number-naming system gives only limited advantage for preschooler's numerical development: Comparisons of Vietnamese and French-speaking children
Cited by: 2
Author(s): Mai-Liên T. Lê, Marie-Pascale Noël
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.27787

Histo-molecular differentiation of renal cancer subtypes by mass spectrometry imaging and rapid proteome profiling of formalin-fixed paraffin-embedded tumor tissue sections
Cited by: 9
Author(s): Uwe Möginger, Niels Marcussen, Ole N. Jensen
Software Mentions: 2
Published: over 3 years ago

10.3390/jpm10020054

Implementation of MALDI Mass Spectrometry Imaging in Cancer Proteomics Research: Applications and Challenges
Cited by: 16
Author(s): Eline Berghmans, Kurt Boonen, Evelyne Maes, Inge Mertens, Patrick Pauwels, Geert Baggerman
Software Mentions: 1
Published: about 4 years ago

10.1021/acs.analchem.0c04720

Determination of Abundant Metabolite Matrix Adducts Illuminates the Dark Metabolome of MALDI-Mass Spectrometry Imaging Datasets
Cited by: 14
Author(s): Moritz Janda, Brandon K. B. Seah, Dennis Jakob, Janine Beckmann, Benedikt Geier, Manuel Liebeke
Software Mentions: 1
Published: about 3 years ago

10.1007/s11306-017-1252-5

massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics
Cited by: 15
Author(s): Nicholas J. Bond, Albert Koulman, Julian L. Griffin, Zoe Hall
Software Mentions: 1
Published: almost 7 years ago

10.1074/mcp.O115.053918

Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments
Cited by: 50
Author(s): Kyle D. Bemis, April Harry, Lívia S. Eberlin, Christina R. Ferreira, Stephanie M. W. Y. van de Ven, Parag Mallick, Mark L. Stolowitz, Olga Vitek
Software Mentions: 1
Published: about 8 years ago

10.3390/cancers12040863

Mass Spectrometry Imaging Reveals Neutrophil Defensins as Additional Biomarkers for Anti-PD-(L)1 Immunotherapy Response in NSCLC Patients
Cited by: 15
Author(s): Eline Berghmans, Julie Jacobs, Christophe Deben, Christophe Hermans, Glenn Broeckx, Evelien Smits, Evelyne Maes, Jo Raskin, Patrick Pauwels, Geert Baggerman
Software Mentions: 1
Published: over 4 years ago

10.1002/fsn3.324

A study on the physicochemical parameters for <i> <scp>P</scp> enicillium expansum </i> growth and patulin production: effect of temperature, pH, and water activity
Cited by: 46
Author(s): Joanna Tannous, Ali Atoui, A. Khoury, Z. Francis, Isabelle P. Oswald, Olivier Puel, Roger Lteif
Software Mentions: 1
Published: over 8 years ago

10.1093/gigascience/giab049

M2aia—Interactive, fast, and memory-efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data
Cited by: 10
Author(s): Jonas Cordes, Thomas Enzlein, Christian Marsching, Marven Hinze, Sandy Engelhardt, Carsten Hopf, Ivo Wolf
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-018-22499-z

BASIS: High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology
Cited by: 27
Author(s): Kirill Veselkov, Jonathan Sleeman, Emmanuelle Claude, Johannes P.C. Vissers, Dieter Galea, Anna Mróz, Ivan Laponogov, Mark Towers, Robert Tonge, Reza Mirnezami, Zoltán Takáts, Jeremy K. Nicholson, James Langridge
Software Mentions: 1
Published: over 6 years ago