Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: COHCAP
https://packages.ecosyste.ms/registries/bioconductor.org/packages/COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
1 version
Latest release: about 1 year ago
18,667 downloads total
Papers Mentioning COHCAP 11
10.3389/fgene.2014.00324
Statistical methods for detecting differentially methylated loci and regionsCited by: 90
Author(s): Mark D. Robinson, Abdullah Kahraman, Charity W. Law, Helen Lindsay, Małgorzata Nowicka, Lukas M. Weber, Xiaobei Zhou
Software Mentions: 9
Published: about 10 years ago
10.1186/1756-8935-8-6
De novo identification of differentially methylated regions in the human genomeCited by: 639
Author(s): Timothy J. Peters, Michael Buckley, Aaron L. Statham, Ruth Pidsley, Katherine Samaras, Reginald V. Lord, Susan J. Clark, Peter L. Molloy
Software Mentions: 7
Published: almost 10 years ago
10.1089/cmb.2020.0081
GeneDMRs: An R Package for Gene-Based Differentially Methylated Regions AnalysisCited by: 5
Author(s): Xiao Wang, Dan Hao, Haja N. Kadarmideen
Software Mentions: 6
Published: over 3 years ago
10.1186/s13059-014-0579-8
Pancancer analysis of DNA methylation-driven genes using MethylMixCited by: 102
Author(s): Olivier Gevaert, Robert Tibshirani, Sylvia K. Plevritis
Software Mentions: 5
Published: almost 10 years ago
10.1371/journal.pone.0174461
Abnormal expression of mRNA, microRNA alteration and aberrant DNA methylation patterns in rectal adenocarcinomaCited by: 21
Author(s): Hua Yang, Xiukun Ma, Xianglong Liu, Xia Yuan, Hai Qin, Xipeng Zhang
Software Mentions: 5
Published: over 7 years ago
10.1186/s13072-015-0045-1
ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 AssayCited by: 11
Author(s): Jens Preussner, Julia Bayer, Carsten Kuenne, Mario Looso
Software Mentions: 5
Published: almost 9 years ago
10.1186/s12864-020-6722-x
MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expressionCited by: 15
Author(s): Chin-Sheng Teng, Bing-Heng Wu, Ming‐Ren Yen, Pao‐Yang Chen
Software Mentions: 4
Published: over 4 years ago
10.1002/2211-5463.12433
An integrated analysis of genome‐wide <scp>DNA</scp> methylation and gene expression data in hepatocellular carcinomaCited by: 32
Author(s): Xiaojiang Sun, Mingchun Wang, Fenghua Zhang, Xiao Kong
Software Mentions: 3
Published: over 6 years ago
10.1186/s12263-020-00680-2
DNA methylation during human adipogenesis and the impact of fructoseCited by: 7
Author(s): Giulia Tini, Vijayalakshmi Varma, Rosario Lombardo, Greg T. Nolen, Grégory Lefebvre, Patrick Descombes, Sylviane Métairon, Corrado Priami, Jim Kaput, Marie Pier Scott-Boyer
Software Mentions: 3
Published: almost 4 years ago
10.1155/2020/8348147
Identification of Methylated Gene Biomarkers in Patients with Alzheimer’s Disease Based on Machine LearningCited by: 12
Author(s): Jianting Ren, Bo Zhang, Dongfeng Wei, Zhanjun Zhang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0086707
WBSA: Web Service for Bisulfite Sequencing Data AnalysisCited by: 21
Author(s): Liang Fang, Bixia Tang, Yanqing Wang, Jianfeng Wang, Chao Yu, Chen Xu, Junwei Zhu, Jiangwei Yan, Wenming Zhao, Rujiao Li
Software Mentions: 2
Published: almost 11 years ago