bioconductor: CATALYST | Projects

10.7554/eLife.62915

ImmunoCluster provides a computational framework for the nonspecialist to profile high-dimensional cytometry data
Cited by: 9
Author(s): James W. Opzoomer, Jessica A Timms, Kevin Blighe, Thanos P. Mourikis, Nicolas Chapuis, Richard Bekoe, Sedigeh Kareemaghay, Paola Nocerino, Benedetta Apollonio, Alan G. Ramsay, Mahvash Tavassoli, Claire Harrison, Francesca D. Ciccarelli, Peter J. Parker, Michaéla Fontenay, Paul R. Barber, James N. Arnold, Shahram Kordasti
Software Mentions: 13
Published: over 3 years ago

10.1038/s42003-019-0415-5

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering
Cited by: 137
Author(s): Lukas M. Weber, Małgorzata Nowicka, Charlotte Soneson, Mark D. Robinson
Software Mentions: 12
Published: over 5 years ago

10.1186/s13059-021-02363-6

Multi-omic profiling of lung and liver tumor microenvironments of metastatic pancreatic cancer reveals site-specific immune regulatory pathways
Cited by: 24
Author(s): Won Jin Ho, Rossin Erbe, Ludmila Danilova, Zaw Phyo, Emma Bigelow, Genevieve Stein-O’Brien, Dwayne L. Thomas, Soren Charmsaz, Nicole Groß, Skylar Woolman, Kayla Cruz, Rebecca M Munday, Neeha Zaidi, Todd D. Armstrong, Marcelo B. Sztein, Mark Yarchoan, Elizabeth D. Thompson, Elizabeth M. Jaffee, Elana J. Fertig
Software Mentions: 9
Published: over 3 years ago

10.3389/fimmu.2021.634127

Immunophenotyping of Peripheral Blood Mononuclear Cells in Septic Shock Patients With High-Dimensional Flow Cytometry Analysis Reveals Two Subgroups With Differential Responses to Immunostimulant Drugs
Cited by: 4
Author(s): Ya Wang, Brian Gloss, Benjamin Tang, Suat Dervish, Brigitte Santner-Nanan, Christina Whitehead, Kristy Masters, Kristen K. Skarratt, Sally Teoh, Stephen D. Schibeci, Nicole Fewings, Chrystelle Brignone, Frédéric Triebel, David R. Booth, Anthony S. McLean, Marek Nalos
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2020.00714

Characterization of the Impact of Daclizumab Beta on Circulating Natural Killer Cells by Mass Cytometry
Cited by: 7
Author(s): Thanmayi Ranganath, Laura J. Simpson, Anne-Maud Ferreira, Christof Seiler, Elena Vendrame, Nancy Q. Zhao, Jason D. Fontenot, Susan Holmes, Catherine A. Blish
Software Mentions: 6
Published: over 4 years ago

10.1172/jci.insight.148435

A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients
Cited by: 70
Author(s): Samantha M. Morrissey, Anne E Geller, Xiaoling Hu, David Tieri, Chuan‐Fan Ding, Christopher K Klaes, Elizabeth A. Cooke, Matthew R Woeste, Zachary C Martin, Oscar Chen, Sarah A. Bush, Huang‐Ge Zhang, Rodrigo Cavallazzi, Sean P. Clifford, James Chen, Smita Ghare, Shirish Barve, Lu Cai, Maiying Kong, Eric C. Rouchka, Kenneth R. McLeish, Silvia M. Uriarte, Corey T. Watson, Jiapeng Huang, Jun Yan
Software Mentions: 5
Published: over 3 years ago

10.1186/1758-2946-4-28

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis
Cited by: 16
Author(s): Sunghwan Kim, Evan Bolton, Stephen H. Bryant
Software Mentions: 4
Published: almost 12 years ago

10.3389/fphar.2020.00777

Antinociceptive Activity of Chemical Components of Essential Oils That Involves Docking Studies: A Review
Cited by: 17
Author(s): Davidson Barbosa Assis, Humberto de Carvalho Aragão Neto, Diogo Vilar da Fonsêca, Humberto Hugo Nunes de Andrade, Renan Marinho Braga, Nader Badr, Mayara dos Santos Maia, Ricardo Dias de Castro, Luciana Scotti, Reinaldo Nóbrega de Almeida
Software Mentions: 3
Published: over 4 years ago

10.1038/s41419-020-03333-9

SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
Cited by: 74
Author(s): Dario Bongiovanni, Melissa Klug, Olga Lazareva, Simon Weidlich, Marina Pietro Biasi, Simona Ursu, Sarah Warth, Christian Buske, Marina Lukas, Christoph D. Spinner, Moritz von Scheidt, Gianluigi Condorelli, Jan Baumbach, Karl‐Ludwig Laugwitz, Markus List, Isabell Bernlochner
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0238347

Natural killer cell phenotype is altered in HIV-exposed seronegative women
Cited by: 15
Author(s): Nancy Q. Zhao, Elena Vendrame, Anne-Maud Ferreira, Christof Seiler, Thanmayi Ranganath, Michel Alary, Annie‐Claude Labbé, Fernand Guédou, Johanne Poudrier, Susan Holmes, Michel Roger, Catherine A. Blish
Software Mentions: 3
Published: about 4 years ago

10.15252/emmm.202013001

Altered bioenergetics and mitochondrial dysfunction of monocytes in patients with COVID‐19 pneumonia
Cited by: 113
Author(s): Lara Gibellini, Sara De Biasi, Annamaria Paolini, Rebecca Borella, Federica Boraldi, Marco Mattioli, Domenico Lo Tartaro, Lucia Fidanza, Alfredo Caro‐Maldonado, Marianna Meschiari, Vittorio Iadisernia, Erica Bacca, Giovanni Riva, Luca Cicchetti, Daniela Quaglino, Giovanni Guaraldi, Stefano Busani, Massimo Girardis, Cristina Mussini, Andrea Cossarizza
Software Mentions: 3
Published: almost 4 years ago

10.3389/fimmu.2018.01672

Mass Cytometry for the Assessment of Immune Reconstitution After Hematopoietic Stem Cell Transplantation
Cited by: 40
Author(s): Lauren Stern, Helen M. McGuire, Selmir Avdic, Simone Rizzetto, Barbara Fazekas de St Groth, Fabio Luciani, Barry Slobedman, Emily Blyth
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22168532

Selenium Deficiency Due to Diet, Pregnancy, Severe Illness, or COVID-19—A Preventable Trigger for Autoimmune Disease
Cited by: 56
Author(s): Lutz Schomburg
Software Mentions: 3
Published: about 3 years ago

10.1186/s12883-019-1291-9

Stent-retriever assisted vacuum-locked extraction (SAVE) versus a direct aspiration first pass technique (ADAPT) for acute stroke: data from the real-world
Cited by: 32
Author(s): Alex Brehm, Volker Maus, Ioannis Tsogkas, Ruben Colla, Amélie Carolina Hesse, Roland Gerard Gera, Marios‐Nikos Psychogios
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms15011358

In Silico Discovery of Aminoacyl-tRNA Synthetase Inhibitors
Cited by: 15
Author(s): Yulan Zhao, Qingqing Meng, Linquan Bai, Huchen Zhou
Software Mentions: 2
Published: over 10 years ago

10.3390/molecules21070927

Computational Approaches for the Discovery of Human Proteasome Inhibitors: An Overview
Cited by: 15
Author(s): Romina A. Guedes, Patrícia Serra, Jorge A. R. Salvador, Rita C. Guedes
Software Mentions: 2
Published: about 8 years ago

10.3390/cancers13040755

Phenotypic Characterization by Mass Cytometry of the Microenvironment in Ovarian Cancer and Impact of Tumor Dissociation Methods
Cited by: 6
Author(s): Shamundeeswari Anandan, Liv Cecilie Vestrheim Thomsen, Stein-Erik Gullaksen, Tamim Abdelaal, Katrin Kleinmanns, Jørn Skavland, Geir Bredholt, Bjørn Tore Gjertsen, Emmet McCormack, Line Bjørge
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph17249362

Changes in Physical Activity, Sitting and Sleep across the COVID-19 National Lockdown Period in Scotland
Cited by: 36
Author(s): Xanne Janssen, Leanne Fleming, Alison Kirk, Lesley Rollins, David Young, Madeleine Grealy, Bradley MacDonald, Paul Flowers, Lynn Williams
Software Mentions: 1
Published: almost 4 years ago

10.19102/icrm.2021.120202

Letter from the Editor in Chief
Cited by: 0
Author(s): Moussa Mansour
Software Mentions: 1
Published: over 4 years ago

10.1007/s40629-018-0065-z

Placebo effects in allergen immunotherapy: an experts’ opinion
Cited by: 17
Author(s): Anthony J. Frew, Oliver Pfaar
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.16595

Synthesis, bioactivity, 3D-QSAR studies of novel dibenzofuran derivatives as PTP-MEG2 inhibitors
Cited by: 4
Author(s): Ying Ma, Hui‐Yu Wei, Yu-Ze Zhang, Wen-Yan Jin, Honglian Li, Hui Zhou, Xian-Chao Cheng, Run‐Ling Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13062-020-00269-0

On the definition of a self-sustaining chemical reaction system and its role in heredity
Cited by: 8
Author(s): Yu Liu
Software Mentions: 1
Published: about 4 years ago

10.1155/2019/4569826

Systemic Sclerosis Pathogenesis and Emerging Therapies, beyond the Fibroblast
Cited by: 52
Author(s): Andrea Sierra-Sepúlveda, Alexia Esquinca-González, Sergio Adán Benavides Suárez, Diego E. Sordo-Lima, Adrián E. Caballero-Islas, Antonio R. Cabral-Castañeda, Tatiana Sofia Rodrı́guez-Reyna
Software Mentions: 1
Published: over 5 years ago

10.3390/vaccines9010017

Social Patterning and Stability of Intention to Accept a COVID-19 Vaccine in Scotland: Will Those Most at Risk Accept a Vaccine?
Cited by: 66
Author(s): Lynn Williams, Paul Flowers, Julie McLeod, David Young, Lesley Rollins
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13091767

Treatments for HBV: A Glimpse into the Future
Cited by: 6
Author(s): Alessandra Bartoli, Filippo Gabrielli, Andrea Tassi, Carmela Cursaro, Ambra Pinelli, Pietro Andreone
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0244873

What have we learned about positive changes experienced during COVID-19 lockdown? Evidence of the social patterning of change
Cited by: 52
Author(s): Lynn Williams, Lesley Rollins, David Young, Leanne Fleming, Madeleine Grealy, Xanne Janssen, Alison Kirk, Bradley MacDonald, Paul Flowers
Software Mentions: 1
Published: almost 4 years ago

10.3390/cancers12123699

Single Cell Detection of the p53 Protein by Mass Cytometry
Cited by: 3
Author(s): Oda Helen Eck Fagerholt, Monica Hellesøy, Stein-Erik Gullaksen, Bjørn Tore Gjertsen
Software Mentions: 1
Published: almost 4 years ago

10.1186/1752-153X-6-50

Three-dimensional quantitative structure activity relationship (QSAR) of cytotoxic active 3,5-diaryl-4,5-dihydropyrazole analogs: a comparative molecular field analysis (CoMFA) revisited study
Cited by: 3
Author(s): Abdel‐Sattar S. Hamad Elgazwy, Dalia H. Soliman, Saad R. Atta-Allah, Diaa A. Ibrahim
Software Mentions: 1
Published: over 12 years ago

10.7759/cureus.11008

Minerals: An Untapped Remedy for Autoimmune Hypothyroidism?
Cited by: 1
Author(s): Seyad Zulficar Ali Khan, Rayan M Lungba, Uvie Ajibawo-Aganbi, Swathi Veliginti, Maria V Perez Bastidas, Sania Saleem, Ivan Cancarevic
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2020.611318

COVID-19 in Association With Development, Course, and Treatment of Systemic Autoimmune Rheumatic Diseases
Cited by: 14
Author(s): Katja Lakota, Katja Perdan-Pirkmajer, Alojzija Hočevar, Snežna Sodin‐Šemrl, Žiga Rotar, Saša Čučnik, Polona Žigon
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10040801

Novel Coronavirus Disease 2019 (COVID-19) and Cytokine Storms for More Effective Treatments from an Inflammatory Pathophysiology
Cited by: 30
Author(s): Shumpei Yokota, Takako Miyamae, Yoshihiro Kuroiwa, Kusuki Nishioka
Software Mentions: 1
Published: over 3 years ago

10.1007/s40618-020-01477-1

An update on the pathogenesis of Hashimoto’s thyroiditis
Cited by: 54
Author(s): Anthony P. Weetman
Software Mentions: 1
Published: almost 4 years ago

10.1080/14756366.2018.1513926

Synthesis and biological evaluation of pyrrolidine-based T-type calcium channel inhibitors for the treatment of neuropathic pain
Cited by: 2
Author(s): Hak Kyun Yang, Woo Seung Son, Keon Seung Lim, Chan Yun Kim, Eic Ju Lim, Changdev G. Gadhe, Jae Yeol Lee, Kyu Sung Jeong, Sang Min Lim
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-58564-9

Machine learning decodes chemical features to identify novel agonists of a moth odorant receptor
Cited by: 16
Author(s): Gabriela Caballero-Vidal, Cédric Bouysset, Hubert Grunig, Sébastien Fiorucci, Nicolas Montagné, Jérôme Golebiowski, Emmanuelle Jacquin‐Joly
Software Mentions: 1
Published: over 4 years ago

10.1155/2013/940862

Inviscid and Viscous Interactions in Subsonic Corner Flows
Cited by: 2
Author(s): Kung Ming Chung, Po Hsiung Chang, Keh Chin Chang
Software Mentions: 1
Published: almost 12 years ago

10.1186/1745-6215-15-115

The chronic autoimmune thyroiditis quality of life selenium trial (CATALYST): study protocol for a randomized controlled trial
Cited by: 57
Author(s): Kristian Hillert Winther, Torquil Watt, Jakob Bue Bjørner, Per Cramon, Ulla Feldt‐Rasmussen, Christian Gluud, Jeppe Gram, Mogens Grøenvold, László Hegedüs, Nils Knudsen, Åse Krogh Rasmussen, Steen Joop Bonnema
Software Mentions: 1
Published: over 10 years ago

10.1155/2017/1297658

Selenium and Thyroid Disease: From Pathophysiology to Treatment
Cited by: 185
Author(s): Mara Ventura, Miguel Melo, Francisco Carrilho
Software Mentions: 1
Published: almost 8 years ago

Ecosyste.ms: Papers

Projects: bioconductor: CATALYST

Papers Mentioning CATALYST 37