Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.62915

https://doi.org/10.7554/eLife.62915

Cited by: 9
Author(s): James W. Opzoomer, Jessica A Timms, Kevin Blighe, Thanos P. Mourikis, Nicolas Chapuis, Richard Bekoe, Sedigeh Kareemaghay, Paola Nocerino, Benedetta Apollonio, Alan G. Ramsay, Mahvash Tavassoli, Claire Harrison, Francesca D. Ciccarelli, Peter J. Parker, Michaéla Fontenay, Paul R. Barber, James N. Arnold, Shahram Kordasti
Published: about 3 years ago

Software Mentions 13

bioconductor: CATALYST
Cytometry dATa anALYSis Tools
Papers that mentioned: 37
bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
bioconductor: cydar
Using Mass Cytometry for Differential Abundance Analyses
Papers that mentioned: 6
bioconductor: diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clustering
Papers that mentioned: 18
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
Papers that mentioned: 177
bioconductor: scDataviz
scDataviz: single cell dataviz and downstream analyses
Papers that mentioned: 1
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
pypi: cc
UNKNOWN
Papers that mentioned: 12
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: imctools
Tools to handle Fluidigm IMC data
Papers that mentioned: 2
pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell data
Papers that mentioned: 96