Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: BridgeDbR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/BridgeDbR

Code for using BridgeDb identifier mapping framework from within R
1 version
Latest release: about 1 year ago
16,545 downloads total

Papers Mentioning BridgeDbR 4

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago

10.1186/s12859-015-0708-8

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment
Cited by: 13
Author(s): Anwesha Bohler, Lars Eijssen, Martijn P. van Iersel, C. René Leemans, Egon Willighagen, Martina Kutmon, Magali Jaillard, Chris T. Evelo
Software Mentions: 5
Published: about 9 years ago

10.3389/fgene.2019.00059

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome
Cited by: 10
Author(s): Ryan Miller, Friederike Ehrhart, Lars Eijssen, Denise Slenter, Leopold Curfs, Chris T. Evelo, Egon Willighagen, Martina Kutmon
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00661

Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials
Cited by: 33
Author(s): Marvin Martens, Tim Verbruggen, Penny Nymark, Roland C. Grafström, Lyle D. Burgoon, Hristo Aladjov, Fernando Torres Andón, Chris T. Evelo, Egon Willighagen
Software Mentions: 2
Published: almost 6 years ago