Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-015-0708-8

https://doi.org/10.1186/s12859-015-0708-8

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

Cited by: 13
Author(s): Anwesha Bohler, Lars Eijssen, Martijn P. van Iersel, C. René Leemans, Egon Willighagen, Martina Kutmon, Magali Jaillard, Chris T. Evelo
Published: over 9 years ago

Software Mentions 5

bioconductor: BridgeDbR
Code for using BridgeDb identifier mapping framework from within R
Papers that mentioned: 4
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
bioconductor: sigPathway
Pathway Analysis
Papers that mentioned: 15