bioconductor: AgiMicroRna | Projects

10.3389/fimmu.2021.709173

The Role of Hemoglobin Subunit Delta in the Immunopathy of Multiple Sclerosis: Mitochondria Matters
Cited by: 6
Author(s): Afshin Derakhshani, Hossein Safarpour, Behzad Baradaran, Nima Hemmat, Patrizia Leone, Zahra Asadzadeh, Mehrdad Pashazadeh, Behzad Baradaran, Vito Racanelli
Software Mentions: 9
Published: about 3 years ago

10.1186/s12920-015-0106-0

Integrated approaches to miRNAs target definition: time-series analysis in an osteosarcoma differentiative model
Cited by: 15
Author(s): Andrea Grilli, Marika Sciandra, Mario Terracciano, Piero Picci, Katia Scotlandi
Software Mentions: 6
Published: over 9 years ago

10.1186/s13073-016-0282-3

Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis
Cited by: 45
Author(s): Deepa Rajamani, Manoj Bhasin
Software Mentions: 6
Published: over 8 years ago

10.1128/mBio.01037-19

Reprogramming of Small Noncoding RNA Populations in Peripheral Blood Reveals Host Biomarkers for Latent and Active Mycobacterium tuberculosis Infection
Cited by: 24
Author(s): Leonardo Silva de Araujo, Marcelo Ribeiro-Alves, Thyago Leal-Calvo, Janaina Aparecida Medeiros Leung, Verónica Durán, Mohamed Samir, Steven R. Talbot, Aravind Tallam, Fernanda Carvalho de Queiroz Mello, Robert Geffers, Maria Helena Féres Saad, Frank Peßler
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-31882-9

Investigating the genetic profile of dopaminergic neurons in the VTA in response to perinatal nicotine exposure using mRNA-miRNA analyses
Cited by: 14
Author(s): Renee F. Keller, Andrei Dragomir, Yonggang Fan, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: about 6 years ago

10.1186/s12885-019-6249-1

Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients
Cited by: 38
Author(s): Robin Mjelle, Simona Dima, Nicolae Bacalbaşa, Konika Chawla, Andrei Sorop, Dana Cucu, Vlad Herlea, Pål Sætrom, Irinel Popescu
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-37098-1

Comparison between dopaminergic and non-dopaminergic neurons in the VTA following chronic nicotine exposure during pregnancy
Cited by: 9
Author(s): Renee F. Keller, Tina Kazemi, Andrei Dragomir, Yasemin M. Akay, Metin Akay
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep22932

Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horse
Cited by: 44
Author(s): Núria Mach, Sandra Plancade, Alicja Pacholewska, Jérôme Lecardonnel, Julie Rivière, Marco Moroldo, Anne Vaiman, Caroline Morgenthaler, Marine Beinat, Alizée Nevot, Céline Robert, Éric Barrey
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2164-12-64

Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library
Cited by: 118
Author(s): Pedro López-Romero
Software Mentions: 4
Published: almost 14 years ago

10.1186/1471-2105-13-80

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses
Cited by: 15
Author(s): Wessel N. van Wieringen, Kristian Unger, Gwenaël G. R. Leday, Oscar Krijgsman, Renée X. de Menezes, Bauke Ylstra, Mark A. van de Wiel
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-020-60025-2

Identification of putative biomarkers for Infantile Hemangiomas and Propranolol treatment via data integration
Cited by: 14
Author(s): Horacio Gómez-Acevedo, Yuemeng Dai, Graham M. Strub, Carrie J. Shawber, June K. Wu, Gresham T. Richter
Software Mentions: 4
Published: over 4 years ago

10.1186/1471-2164-14-643

Integrated genomic analysis of triple-negative breast cancers reveals novel microRNAs associated with clinical and molecular phenotypes and sheds light on the pathways they control
Cited by: 75
Author(s): Emanuele de Rinaldis, Patrycja Gazinska, Anca Mera, Zora Modrušan, Grazyna Fedorowicz, Brian Burford, Cheryl Gillett, Pierfrancesco Marra, Anita Grigoriadis, David Dornan, Lars Holmberg, Sarah Pinder, Andrew Tutt
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12967-019-02168-z

The regulatory effect of microRNA-21a-3p on the promotion of telocyte angiogenesis mediated by PI3K (p110α)/AKT/mTOR in LPS induced mice ARDS
Cited by: 24
Author(s): Yile Zhou, Yong Yang, Tao Liang, Yan Hu, Haihong Tang, Dongli Song, Hao Fang
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00429-017-1389-z

MicroRNAs contribute to postnatal development of laminar differences and neuronal subtypes in the rat medial entorhinal cortex
Cited by: 6
Author(s): Lene Christin Olsen, Kally C. O’Reilly, Nina‐Beate Liabakk, Menno P. Witter, Pål Sætrom
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0137027

Gene Expression and MicroRNA Expression Analysis in Small Arteries of Spontaneously Hypertensive Rats. Evidence for ER Stress
Cited by: 21
Author(s): Teresa Palao, Karl Swärd, Aldo Jongejan, Perry D. Moerland, Judith de Vos, Angela van Weert, Silvia M. Arribas, Gergely Groma, Ed vanBavel, Erik N. T. P. Bakker
Software Mentions: 3
Published: about 9 years ago

10.1186/1477-5956-10-S1-S15

Identifying transcription factors and microRNAs as key regulators of pathways using Bayesian inference on known pathway structures
Cited by: 9
Author(s): Damian Roqueiro, Lei Huang, Yang Dai
Software Mentions: 3
Published: over 12 years ago

10.1038/s41598-020-71875-1

Investigating the influence of perinatal nicotine and alcohol exposure on the genetic profiles of dopaminergic neurons in the VTA using miRNA–mRNA analysis
Cited by: 15
Author(s): Tina Kazemi, Shuyan Huang, Naze G. Avci, Charlotte Mae K. Waits, Yasemin M. Akay, Metin Akay
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-76024-2

An in-silico method leads to recognition of hub genes and crucial pathways in survival of patients with breast cancer
Cited by: 17
Author(s): Sepideh Dashti, Mohammad Taheri, Soudeh Ghafouri‐Fard
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-88221-8

Investigating the effects of chronic perinatal alcohol and combined nicotine and alcohol exposure on dopaminergic and non-dopaminergic neurons in the VTA
Cited by: 2
Author(s): Tina Kazemi, Shuyan Huang, Naze G. Avci, Yasemin M. Akay, Metin Akay
Software Mentions: 3
Published: over 3 years ago

10.1038/onc.2015.499

Enhanced MAPK signaling drives ETS1-mediated induction of miR-29b leading to downregulation of TET1 and changes in epigenetic modifications in a subset of lung SCC
Cited by: 26
Author(s): Molly A. Taylor, Mark Wappett, Oona Delpuech, Helen Brown, Christine Chresta
Software Mentions: 3
Published: almost 9 years ago

10.18632/oncotarget.7262

miR-451a is underexpressed and targets AKT/mTOR pathway in papillary thyroid carcinoma
Cited by: 72
Author(s): Emanuela Minna, Paola Romeo, Matteo Dugo, Loris De Cecco, Katia Todoerti, Silvana Pilotti, Francesco Perrone, Ettore Seregni, Luca Agnelli, Antonino Neri, Angela Greco, Maria Grazia Borrello
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.10578

Circulating exosomes potentiate tumor malignant properties in a mouse model of chronic sleep fragmentation
Cited by: 49
Author(s): Abdelnaby Khalyfa, Isaac Almendros, Alex Gileles‐Hillel, Mahzad Akbarpour, Wojciech Trzépizur, Babak Mokhlesi, Lei Huang, Jorge Andrade, Ramón Farré, David Gozal
Software Mentions: 3
Published: over 8 years ago

10.3390/jcm7110419

Unique MicroRNA and mRNA Interactions in EGFR-Mutated Lung Adenocarcinoma
Cited by: 13
Author(s): Sophia Subat, Kentaro Inamura, Hironori Ninomiya, Hiroko Nagano, Sakae Okumura
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1005879

3’UTR Shortening Potentiates MicroRNA-Based Repression of Pro-differentiation Genes in Proliferating Human Cells
Cited by: 73
Author(s): Yonit Hoffman, Débora Rosa Bublik, Alejandro P. Ugalde, Ran Elkon, Tammy Biniashvili, Reuven Agami, Moshe Oren, Yitzhak Pilpel
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0150154

Urinary Exosomal miRNA Signature in Type II Diabetic Nephropathy Patients
Cited by: 168
Author(s): Denis Delić, Claudia Eisele, RM Schmid, Patrick Baum, Franziska Wiech, Martin Gerl, Heike Zimdahl, Steven S. Pullen, Richard Urquhart
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-03456-8

TGF-beta/atRA-induced Tregs express a selected set of microRNAs involved in the repression of transcripts related to Th17 differentiation
Cited by: 31
Author(s): Josiane Lilian dos Santos Schiavinato, Rodrigo Haddad, Felipe Saldanha-Araújo, João Baiochi, Astolfo Gomes de Mello Araújo, Priscila Santos Scheucher, Dimas Tadeu Covas, Marco Antônio Zago, Rodrigo Alexandre Panepucci
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-13-620

MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction
Cited by: 10
Author(s): Przemyslaw Stempor, Michael Cauchi, P. David Wilson
Software Mentions: 2
Published: almost 13 years ago

10.3390/ijms22020517

Identifying the miRNA Signature Association with Aging-Related Senescence in Glioblastoma
Cited by: 4
Author(s): Mutharasu Gnanavel, Akshaya Murugesan, Saravanan Konda Mani, Olli Yli‐Harja, Meenakshisundaram Kandhavelu
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.6599

Overcoming melanoma resistance to vemurafenib by targeting CCL2-induced miR-34a, miR-100 and miR-125b
Cited by: 77
Author(s): Elisabetta Vergani, Lorenza Di Guardo, Matteo Dugo, Sara Rigoletto, Gabrina Tragni, Roberta Ruggeri, Francesco Perrone, Elena Tamborini, Annunziata Gloghini, Flavio Arienti, Barbara Vergani, Paola Deho, Loris De Cecco, Viviana Vallacchi, Paola Frati, Eriomina Shahaj, Antonello Villa, Mario Santinami, Filippo de Braud, Licia Rivoltini, Monica Rodolfo
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0097640

Cross-Platform Toxicogenomics for the Prediction of Non-Genotoxic Hepatocarcinogenesis in Rat
Cited by: 43
Author(s): Michael Roemer, Johannes Eichner, Ute Metzger, Markus F. Templin, Simon Plummer, Heidrun Ellinger‐Ziegelbauer, Andreas Zell
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0174699

Epigenetic silencing of V(D)J recombination is a major determinant for selective differentiation of mucosal-associated invariant t cells from induced pluripotent stem cells
Cited by: 9
Author(s): Yutaka Saitô, Chie Sugimoto, Toutai Mituyama, Hiroshi Wakao
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.662528

A Computational Systems Analyses to Identify Biomarkers and Mechanistic Link in Psoriasis and Cutaneous Squamous Cell Carcinoma
Cited by: 2
Author(s): Sidra Adil, Rehan Zafar Paracha, Salma Tariq, Maryum Nisar, Sadaf Ijaz, Amnah Siddiqa, Zamir Hussain, Afreenish Amir
Software Mentions: 2
Published: over 3 years ago

10.1016/j.dib.2021.107435

Circulating miRNome profiling data in Behçet's syndrome
Cited by: 3
Author(s): Giacomo Bagni, Giacomo Emmi, Elena Lastraioli, Francesca Di Patti, Elena Silvestri, Angela Guerriero, Serena Pillozzi, Elena Niccolai, Amedeo Amedei, Lorenzo Emmi, Domenico Prisco
Software Mentions: 2
Published: about 3 years ago

10.1186/s13029-015-0035-5

MagiCMicroRna: a web implementation of AgiMicroRna using shiny
Cited by: 9
Author(s): Maarten Coonen, Daniël H. J. Theunissen, Jos Kleinjans, Danyel Jennen
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-11638-7

Predicted effects of observed changes in the mRNA and microRNA transcriptome of lung neutrophils during S. pneumoniae pneumonia in mice
Cited by: 17
Author(s): John C. Gomez, Hong Dang, Matthew Kanke, Robert S. Hagan, Jason R. Mock, Samir N. P. Kelada, Praveen Sethupathy, Claire M. Doerschuk
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2018.00558

Persistence of Epigenomic Effects After Recovery From Repeated Treatment With Two Nephrocarcinogens
Cited by: 4
Author(s): Alice Limonciel, Simone G. van Breda, Xiaoqi Jiang, Gregory D. Tredwell, Anja Wilmes, Lydia Aschauer, Alexandros P. Siskos, Agapios Sachinidis, Hector C. Keun, Annette Kopp‐Schneider, Theo M. de Kok, Jos Kleinjans, Paul Jennings
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0039167

miR-337-3p and Its Targets STAT3 and RAP1A Modulate Taxane Sensitivity in Non-Small Cell Lung Cancers
Cited by: 97
Author(s): Lin Du, M. Cecilia Subauste, Christopher DeSevo, Zhenze Zhao, Michael Baker, Robert Borkowski, Jeoffrey Schageman, Rachel M. Greer, Chuanchuan Yang, Milind Suraokar, Ignacio I. Wistuba, Adi F. Gazdar, John D. Minna, Alexander Pertsemlidis
Software Mentions: 1
Published: over 12 years ago

Ecosyste.ms: Papers

Projects: bioconductor: AgiMicroRna

Papers Mentioning AgiMicroRna 37