10.1371/journal.pcbi.1009197
Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infectionCited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12935-020-01179-x
Expression profile analysis identifies key genes as prognostic markers for metastasis of osteosarcomaCited by: 12
Author(s): Xiaoqing Guan, Zhiyuan Guan, Chunli Song
Software Mentions: 6
Published: over 6 years ago
10.3390/ijms22115981
Longitudinal Changes in Diet Cause Repeatable and Largely Reversible Shifts in Gut Microbial Communities of Laboratory Mice and Are Observed across Segments of the Entire Intestinal TractCited by: 8
Author(s): Adrian Low, Melissa Soh, Sou Miyake, Vanessa Zhi Jie Aw, Jian Feng, Adeline Wong, Henning Seedorf
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pone.0183517
Integrated analysis of long non-coding RNAs in human gastric cancer: An in silico studyCited by: 7
Author(s): Han Wang, Zhenyu Zhang, Bangshun He, Yu Xu, Jun Zhang, Weijun Cao
Software Mentions: 6
Published: almost 9 years ago
10.1186/s13059-020-01967-8
BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertaintyCited by: 16
Author(s): Simone Tiberi, Mark D. Robinson
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pcbi.1009095
Identifying the combinatorial control of signal-dependent transcription factorsCited by: 15
Author(s): Ning Wang, Diane Lefaudeux, Anup Mazumder, Jingyi Jessica Li, Alexander Hoffmann
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-021-89938-2
Improved methods for RNAseq-based alternative splicing analysisCited by: 20
Author(s): Rebecca F. Halperin, Apurva M. Hegde, Jessica D. Lang, Elizabeth A. Raupach, Christophe Legendre, Winnie S. Liang, Patricia LoRusso, Aleksandar Sekulić, Jeffrey A. Sosman, Jeffrey M. Trent, Sampathkumar Rangasamy, Patrick Pirrotte, Nicholas J. Schork
Software Mentions: 6
Published: about 5 years ago
10.1186/s12916-020-01740-5
On the validity of the centrality hypothesis in cross-sectional between-subject networks of psychopathologyCited by: 36
Author(s): Tobias R. Spiller, Ofir Levi, Yuval Neria, Benjamin Suarez‐Jimenez, Yair Bar‐Haim, Amit Lazarov
Software Mentions: 6
Published: over 5 years ago
10.1038/sdata.2016.25
Extensive sequencing of seven human genomes to characterize benchmark reference materialsCited by: 535
Author(s): Justin M. Zook, David Catoe, Jennifer McDaniel, Lindsay K. Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E. Mason, Noah Alexander, Elizabeth Hénaff, Alexa B. R. McIntyre, Dhruva Chandramohan, Feng Chen, Erich B. Jaeger, Ali Moshrefi, Khoa Pham, William Stedman, Tiffany Y. Liang, Michael Saghbini, Željko Džakula, Alex Hastie, Han Cao, Gintaras Deikus, Eric E. Schadt, Robert Sebra, Ali Kashif Bashir, Rebecca Truty, Christopher Chang, Natali Gulbahce, Keyan Zhao, Srinka Ghosh, Fiona Hyland, Yutao Fu, Mark Chaisson, Chunlin Xiao, Jonathan Trow, Stephen T. Sherry, Alexander Wait Zaranek, Madeleine Ball, Jason Bobe, Preston W. Estep, George M. Church, Patrick Marks, Sofia Kyriazopoulou-Panagiotopoulou, Grace Zheng, Michael Schnall-Levin, Heather Ordonez, Patrice A Mudivarti, Kristina Giorda, Ying Sheng, Karoline Bjarnesdatter Rypdal, Marc Salit
Software Mentions: 6
Published: about 10 years ago
10.1084/jem.20192386
Transcription cofactor GRIP1 differentially affects myeloid cell–driven neuroinflammation and response to IFN-β therapyCited by: 4
Author(s): Sanda Mimouna, David A. Rollins, Gayathri Shibu, Bowranigan Tharmalingam, Dinesh K Deochand, Xi Chen, David J. Oliver, Yurii Chinenov, Inez Rogatsky
Software Mentions: 6
Published: over 5 years ago
10.1111/jcmm.14991
Mutational landscape and genetic signatures of cell‐free DNA in tumour‐induced osteomalaciaCited by: 2
Author(s): Nan Wu, Zhen Zhang, Xi Zhou, Hengqiang Zhao, Yue Ming, Xue Wu, Xian Zhang, Xinzhuang Yang, Meng Zhou, Hua Bao, Weisheng Chen, Yong Wu, Sen Liu, Huizi Wang, Yuchen Niu, Yalun Li, Yu Zheng, Yang Shao, Na Gao, Ying Yang, Ying Liu, Wenli Li, Jia Liu, Na Zhang, Yang Xu, Yuan Xu, Mei Li, Yingli Sun, Jianzhong Su, Jianguo Zhang, Weibo Xia, Guixing Qiu, Yong Liu, Jiaqi Liu, Zhihong Wu
Software Mentions: 6
Published: about 6 years ago
10.1186/s12864-020-6748-0
Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leechesCited by: 19
Author(s): Vladislav V. Babenko, Oleg V. Podgorny, Valentin A. Manuvera, Artem S. Kasianov, Alexander I. Manolov, Ekaterina N. Grafskaia, Dmitriy A. Shirokov, Alexey S. Kurdyumov, D. V. Vinogradov, Anastasia S. Nikitina, Sergey I. Kovalchuk, Nikolay Anikanov, Ivan Butenko, Olga Pobeguts, Daria Matyushkina, Daria V. Rakitina, Elena S. Kostryukova, Victor G. Zgoda, I. P. Baskova, В. М. Трухан, Mikhail S. Gelfand, Vadim M. Govorun, Helgi B. Schiöth, В. Н. Лазарев
Software Mentions: 6
Published: about 6 years ago
10.3390/biomedicines9020206
Zoom in on Antibody Aggregates: A Potential Pitfall in the Search of Rare EV PopulationsCited by: 1
Author(s): Rikke Wehner Rasmussen, Jaco Botha, Frederik Prip, Mathilde Sanden, Mads Nielsen, Aase Handberg
Software Mentions: 6
Published: over 5 years ago
10.7554/eLife.55249
Generation of inner ear hair cells by direct lineage conversion of primary somatic cellsCited by: 49
Author(s): Louise Menendez, Talon Trecek, Suhasni Gopalakrishnan, Litao Tao, Alexander L. Markowitz, Haoze V Yu, Xizi Wang, Juan Llamas, Chi‐Chou Huang, James Lee, Radha Kalluri, Justin K. Ichida, Neil Segil
Software Mentions: 6
Published: about 6 years ago
10.7554/eLife.40197
Global DNA methylation remodeling during direct reprogramming of fibroblasts to neuronsCited by: 61
Author(s): Chongyuan Luo, Qian Yi Lee, Orly L. Wapinski, Rosa Castanon, Joseph R. Nery, Moritz Mall, Michael S. Kareta, Shay Cullen, Margaret A. Goodell, Howard Y. Chang, Marius Wernig, Joseph R. Ecker
Software Mentions: 6
Published: over 7 years ago
10.1155/2013/203681
Time Series Expression Analyses Using RNA-seq: A Statistical ApproachCited by: 23
Author(s): Sangwon Oh, Seongho Song, Gregory A. Grabowski, Hongyu Zhao, James P. Noonan
Software Mentions: 6
Published: over 13 years ago
10.1371/journal.pcbi.1005515
Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimatesCited by: 17
Author(s): Andreas Tuerk, Gregor Wiktorin, Serhat Güler
Software Mentions: 6
Published: about 9 years ago
10.18632/oncotarget.10882
Development of risk prediction models for glioma based on genome-wide association study findings and comprehensive evaluation of predictive performancesCited by: 3
Author(s): Yingjie Zhao, Gong Chen, Hongjie Yu, Li Hu, Yunyi Bian, Dapeng Yun, Juxiang Chen, Ying Mao, Hongyan Chen, Daru Lu
Software Mentions: 6
Published: almost 10 years ago
10.7717/peerj.484
The mitochondrial genome of<i>Paragonimus westermani</i>(Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda)Cited by: 29
Author(s): Devendra Kumar Biswal, Anupam Chatterjee, Alok Bhattacharya, Veena Tandon
Software Mentions: 6
Published: almost 12 years ago
10.1111/acel.13381
Inhibition of the neuromuscular acetylcholine receptor with atracurium activates FOXO/DAF‐16‐induced longevityCited by: 7
Author(s): Rebecca L. McIntyre, Simone Denis, Rashmi Kamble, Marte Molenaars, Michael Petr, Bauke V. Schomakers, Mizanur Rahman, Siddhartha Datta Gupta, Márton L. Tóth, Siva A. Vanapalli, Aldo Jongejan, Morten Scheibye‐Knudsen, Riekelt H. Houtkooper, Georges E. Janssens
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pgen.1005053
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53Cited by: 47
Author(s): Kristina Kirschner, Shamith A. Samarajiwa, Jonathan Cairns, Suraj Menon, Pedro A. Pérez–Mancera, Kosuke Tomimatsu, Camino Bermejo‐Rodríguez, Yoko Itō, Tamir Chandra, Masako Narita, Scott K. Lyons, Andy G. Lynch, Hiroshi Kimurâ, Tetsuya Ohbayashi, Simon Tavaré
Software Mentions: 6
Published: over 11 years ago
10.12688/f1000research.24345.2
Interactive exploratory data analysis of Integrative Human Microbiome Project data using MetavizCited by: 0
Author(s): Justin Wagner, Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Software Mentions: 6
Published: about 5 years ago
10.1186/s12866-019-1540-5
Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South AfricaCited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: almost 7 years ago
10.1186/1752-0509-8-S4-S5
Network-based biomarkers enhance classical approaches to prognostic gene expression signaturesCited by: 18
Author(s): Rebecca Barter, Sarah-Jane Schramm, Graham J. Mann, Jean Yee Hwa Yang
Software Mentions: 6
Published: over 11 years ago
10.3389/fonc.2021.614531
Identification and Validation of Hub Genes Associated With Hepatocellular Carcinoma Via Integrated Bioinformatics AnalysisCited by: 8
Author(s): Sumei Wang, Zuoli Song, Bing Teng, Jinjuan Zhang, Jiandong Zhang, Shuye Liu
Software Mentions: 6
Published: about 5 years ago
10.3390/cancers13133116
Plasma Proteomic Analysis in Non-Small Cell Lung Cancer Patients Treated with PD-1/PD-L1 BlockadeCited by: 14
Author(s): Mohamed Eltahir, Johan Isaksson, Johanna Sofia Margareta Mattsson, Klas Kärre, Johan Botling, Martin Lord, Sara M. Mangsbo, Patrick Micke
Software Mentions: 6
Published: about 5 years ago
10.1172/jci.insight.149185
Th1 polarization defines the synovial fluid T cell compartment in oligoarticular juvenile idiopathic arthritisCited by: 16
Author(s): Amélie M. Julé, Kacie J. Hoyt, Kevin Wei, María Gutiérrez‐Arcelus, Maria Taylor, Julie Ng, James A. Lederer, Siobhan Case, Margaret H. Chang, Ezra Cohen, Fatma Dedeoğlu, Melissa Hazen, Jonathan S Hausmann, Olha Halyabar, Erin Janssen, Jeffrey Lo, Mindy S. Lo, Esra Meidan, Jay Roberts, Mary Beth Son, Robert P. Sundel, Pui Y. Lee, Talal Chatila, Peter A. Nigrović, Lauren A. Henderson
Software Mentions: 6
Published: almost 5 years ago
10.1038/s42003-021-01712-2
Feedback mechanisms stabilise degraded turf algal systems at a CO2 seep siteCited by: 10
Author(s): Ben P. Harvey, Ro Allen, Sylvain Agostini, Linn Hoffmann, Koetsu Kon, Tina C. Summerfield, Shigeki Wada, Jason M. Hall-Spencer
Software Mentions: 6
Published: over 5 years ago
10.3390/plants9010070
Mass Spectrometry Imaging of Specialized Metabolites for Predicting Lichen Fitness and Snail ForagingCited by: 5
Author(s): Alice Gadéa, Mathieu Fanuel, Anne-Cécile Le Lamer, Joël Boustié, Hélène Rogniaux, Maryvonne Charrier, Françoise Lohézic-Le Dévéhat
Software Mentions: 6
Published: over 6 years ago
10.3390/brainsci10110851
Functional and Structural Connectome Features for Machine Learning Chemo-Brain Prediction in Women Treated for Breast Cancer with ChemotherapyCited by: 4
Author(s): Vincent Chin‐Hung Chen, Tung-Yeh Lin, Dah-Cherng Yeh, Jyh‐Wen Chai, Jun‐Cheng Weng
Software Mentions: 6
Published: over 5 years ago
10.1186/s12859-018-2096-3
A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChipCited by: 32
Author(s): Zhenxing Wang, Xiaoliang Wu, Yadong Wang
Software Mentions: 6
Published: over 8 years ago
10.1038/s41598-020-75974-x
Key factors explaining critical swimming speed in freshwater fish: a review and statistical analysis for Iberian speciesCited by: 30
Author(s): Carlos Cano‐Barbacil, Johannes Radinger, María Argudo, Francesc Rubio‐Gracia, Anna Vila‐Gispert, Emili García‐Berthou
Software Mentions: 6
Published: over 5 years ago
10.3389/fgene.2020.00238
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid ArthritisCited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 6 years ago
10.1186/1471-2105-13-S16-S10
A tutorial in displaying mass spectrometry-based proteomic data using heat mapsCited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: over 13 years ago
10.1371/journal.pone.0252207
Genomic diversity of 39 samples of Pyropia species grown in JapanCited by: 4
Author(s): Yukio Nagano, Kei Kimura, Genta Kobayashi, Yoshio Kawamura
Software Mentions: 6
Published: about 5 years ago
10.3389/fmicb.2017.01548
Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia ComplexCited by: 26
Author(s): Luz Edith Ochoa-Sánchez, Pablo Vinuesa
Software Mentions: 6
Published: almost 9 years ago
10.3390/ijms21010079
Current Projection Methods-Induced Biases at Subgroup Detection for Machine-Learning Based Data-Analysis of Biomedical DataCited by: 10
Author(s): Jörn Lötsch, Alfred Ultsch
Software Mentions: 6
Published: over 6 years ago
10.1128/mBio.02399-20
Hemozoin Promotes Lung Inflammation via Host Epithelial ActivationCited by: 1
Author(s): Shivang S. Shah, David A. Fidock, Alice Prince
Software Mentions: 6
Published: over 5 years ago
10.1186/s12864-018-4876-6
The arrhythmogenic cardiomyopathy-specific coding and non-coding transcriptome in human cardiac stromal cellsCited by: 14
Author(s): Johannes Michael Rainer, Viviana Meraviglia, Hagen Blankenburg, Chiara Piubelli, Peter P. Pramstaller, Adolfo Paolin, Elisa Cogliati, Giulio Pompilio, Elena Sommariva, Francisco S. Domingues, Alessandra Rossini
Software Mentions: 6
Published: about 8 years ago
10.1186/s12859-019-3309-0
shinyBN: an online application for interactive Bayesian network inference and visualizationCited by: 10
Author(s): Jia-Jin Jason Chen, Ruyang Zhang, Xuesi Dong, Lijuan Lin, Ying Zhu, Jieyu He, David C. Christiani, Yongyue Wei, Feng Chen
Software Mentions: 6
Published: over 6 years ago
10.1186/s13059-020-1949-z
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq dataCited by: 173
Author(s): Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta Mereu, Brian A. Joughin, Oliver Stegle, Douglas A. Lauffenburger, Holger Heyn, Bence Szalai, Julio Sáez-Rodríguez
Software Mentions: 6
Published: over 6 years ago
10.3390/v13020169
The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in BatsCited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0240362
A machine learning approach to the digitalization of bank customers: Evidence from random and causal forestsCited by: 28
Author(s): Santiago Carbó-Valverde, Pedro J. Cuadros-Solas, Francisco Rodríguez-Fernández
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-020-77055-5
Identification of transcription factor co-regulators that drive prostate cancer progressionCited by: 11
Author(s): Manjunath Siddappa, Sajad A. Wani, Mark D. Long, Damien A. Leach, Ewy A. Mathé, Charlotte Bevan, Moray J. Campbell
Software Mentions: 6
Published: over 5 years ago
10.1002/ece3.8030
Marking through molts: An evaluation of visible implant elastomer to permanently mark individuals in a lower termite speciesCited by: 1
Author(s): Rebecca F. B. Padget, Faye J. Thompson
Software Mentions: 6
Published: almost 5 years ago
10.1155/2015/670691
Statistical Methods for Establishing Personalized Treatment Rules in OncologyCited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: over 11 years ago
10.1371/journal.pone.0136282
Association of IL10 Polymorphisms and Leprosy: A Meta-AnalysisCited by: 23
Author(s): Lucia Elena Alvarado-Arnez, Evaldo Pinheiro Amaral, Carolinne de Sales Marques, Sandra Maria Barbosa Durães, Cynthia Chester Cardoso, Euzenir Nunes Sarno, Antônio Guilherme Pacheco, Francisco Carlos Félix Lana, Milton Ozório Moraes
Software Mentions: 6
Published: almost 11 years ago
10.7717/peerj.8844
Dynamics of ammonia oxidizers and denitrifiers in response to compost addition in black soil, Northeast ChinaCited by: 8
Author(s): Zhihui Yang, Yupeng Guan, Ayodeji Bello, Yanxiang Wu, Jiayi Ding, Leiqi Wang, Yuqing Ren, Guangxin Chen, Wei Yang
Software Mentions: 6
Published: about 6 years ago
10.1186/s12918-015-0211-x
Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potentialCited by: 41
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 6
Published: almost 11 years ago
10.1007/s00109-020-01908-9
Immune landscape and a novel immunotherapy-related gene signature associated with clinical outcome in early-stage lung adenocarcinomaCited by: 17
Author(s): Xuanwen Bao, Run Shi, Tianyu Zhao, Yanfang Wang
Software Mentions: 6
Published: about 6 years ago
10.1016/j.immuni.2021.08.011
Adenosine-to-inosine editing of endogenous Z-form RNA by the deaminase ADAR1 prevents spontaneous MAVS-dependent type I interferon responsesCited by: 58
Author(s): Qingli Tang, Rachel E. Rigby, George R. Young, Astrid Korning Hvidt, Tanja Davis, Tiong Kit Tan, Anne Bridgeman, Alain Townsend, George Kassiotis, Jan Rehwinkel
Software Mentions: 6
Published: almost 5 years ago
10.3389/fpls.2021.675227
Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803Cited by: 4
Author(s): N. M. Scheurer, Yogeswari Rajarathinam, Stefan Timm, Christin Köbler, Joachim Kopka, Martin Hagemann, Annegret Wilde
Software Mentions: 6
Published: about 5 years ago
10.3389/fvets.2019.00214
Transcriptomic Profiling of Duodenal Epithelium Reveals Temporally Dynamic Impacts of Direct Duodenal Starch-Infusion During Dry Period of Dairy CattleCited by: 2
Author(s): Congjun Li, Shudai Lin, María Jose Ranilla-García, VI Ransom L. Baldwin
Software Mentions: 6
Published: about 7 years ago
10.3390/molecules25112615
The Study on the hERG Blocker Prediction Using Chemical Fingerprint AnalysisCited by: 21
Author(s): Kwang-Eun Choi, Anand Balupuri, Nam Sook Kang
Software Mentions: 6
Published: about 6 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cellCited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: almost 5 years ago
10.1186/s40478-019-0681-y
A simplified approach using Taqman low-density array for medulloblastoma subgroupingCited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: over 7 years ago
10.3390/s20205947
A Pattern-Recognition-Based Ensemble Data Imputation Framework for Sensors from Building Energy SystemsCited by: 7
Author(s): Liang Zhang
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-93970-7
Genomic evolution of antimicrobial resistance in Escherichia coliCited by: 19
Author(s): Pimlapas Leekitcharoenphon, Markus Johansson, Patrick Munk, Burkhard Malorny, Magdalena Skarżyńska, Katharina Wadepohl, Gabriel Moyano, Ayla Hesp, Kees Veldman, Alex Bossers, Magdalena Zając, Dariusz Wasyl, Pascal Sandérs, B. Gonzales-Zorn, Michael S.M. Brouwer, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Frank Møller Aarestrup
Software Mentions: 6
Published: almost 5 years ago
10.3389/fmicb.2017.01379
Cutaneous Microbial Community Variation across Populations of Eastern Hellbenders (Cryptobranchus alleganiensis alleganiensis)Cited by: 25
Author(s): Obed Hernández‐Gómez, Jason T. Hoverman, Rod N. Williams
Software Mentions: 6
Published: almost 9 years ago
10.1186/s12859-018-2477-7
pyHIVE, a health-related image visualization and engineering system using PythonCited by: 5
Author(s): Ruochi Zhang, Ruxing Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-019-55441-y
Exploring inflammatory signatures in arthritic joint biopsies with Spatial TranscriptomicsCited by: 50
Author(s): Konstantin Carlberg, Marina Korotkova, Ludvig Larsson, Anca I. Catrina, Patrik L. Ståhl, Vivianne Malmström
Software Mentions: 6
Published: over 6 years ago
10.3389/fpsyt.2021.659527
A Retrospective Comparative Study in Patients With Cocaine Use Disorder Comorbid With Attention Deficit Hyperactivity Disorder Undergoing an rTMS Protocol TreatmentCited by: 1
Author(s): Stefano Cardullo, Luis Javier Gómez Pérez, Diego Cuppone, Michela Sarlo, Nicola Cellini, Alberto Terraneo, Luigi Gallimberti, Graziella Madeo
Software Mentions: 6
Published: over 5 years ago
10.1186/1471-2105-14-351
On the amyloid datasets used for training PAFIG how (not) to extend the experimental dataset of hexapeptidesCited by: 10
Author(s): Małgorzata Kotulska, Olgierd Unold
Software Mentions: 6
Published: over 12 years ago
10.1371/journal.pone.0198539
Pink shrimp Farfantepenaeus duorarum spatiotemporal abundance trends along an urban, subtropical shoreline slated for restorationCited by: 4
Author(s): Ian C. Zink, Joan A. Browder, Diego Lirman, Joseph E. Serafy
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-021-87436-z
Reproductive performance in houbara bustard is affected by the combined effects of age, inbreeding and number of generations in captivityCited by: 4
Author(s): Robin Rabier, Loïc Lesobre, Alexandre Robert
Software Mentions: 6
Published: about 5 years ago
10.3389/fgene.2021.653474
Identifying ceRNA Networks Associated With the Susceptibility and Persistence of Atrial Fibrillation Through Weighted Gene Co-Expression Network AnalysisCited by: 6
Author(s): Yaozhong Liu, Na Liu, Fan Bai, Qiming Liu
Software Mentions: 6
Published: about 5 years ago
10.3390/diagnostics11091686
Radiomics and Machine Learning Can Differentiate Transient Osteoporosis from Avascular Necrosis of the HipCited by: 15
Author(s): Michail E. Klontzas, Georgios C. Manikis, Katerina Nikiforaki, Evangelia E. Vassalou, Konstantinos Spanakis, Ioannis Stathis, George A. Kakkos, Nikolas Matthaiou, Aristeidis Zibis, Kostas Marias, Apostolos H. Karantanas
Software Mentions: 6
Published: almost 5 years ago
10.1186/s13068-020-01855-0
Lignin intermediates lead to phenyl acid formation and microbial community shifts in meso- and thermophilic batch reactorsCited by: 7
Author(s): Eva Maria Prem, Mira Mutschlechner, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.ppat.1007634
The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon responseCited by: 49
Author(s): Leon Louis Seifert, Clara Si, Debjani Saha, Mohammad Sadic, Maren de Vries, Sarah Ballentine, Aaron Briley, Guojun Wang, Ana M. Valero-Jimenez, Adil Mohamed, Uwe Schaefer, Hong M. Moulton, Adolfo Garcı́a-Sastre, Shashank Tripathi, Brad R. Rosenberg, Meike Dittmann
Software Mentions: 6
Published: over 6 years ago
10.3389/fimmu.2021.676173
Interleukin-17A Causes Osteoarthritis-Like Transcriptional Changes in Human Osteoarthritis-Derived Chondrocytes and Synovial Fibroblasts In VitroCited by: 20
Author(s): Jolet Y Mimpen, Mathew Baldwin, Adam P. Cribbs, Martin Philpott, Andrew Carr, Stephanie G. Dakin, Sarah Snelling
Software Mentions: 6
Published: about 5 years ago
10.3389/fgene.2020.566159
Identifying 8-mRNAsi Based Signature for Predicting Survival in Patients With Head and Neck Squamous Cell Carcinoma via Machine LearningCited by: 10
Author(s): Yanhua Tian, Juncheng Wang, Chao Qin, Guanghao Zhu, Xuan Chen, Zhixiang Chen, Yuexiang Qin, Ming Wei, Zhexuan Li, Xin Zhang, Yunxia Lv, Gengming Cai
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-019-56074-x
Metagenomic analysis of dental calculus in ancient Egyptian baboonsCited by: 20
Author(s): Claudio Ottoni, Meriam Guellil, Andrew T. Ozga, Anne C. Stone, Oliver Kersten, Barbara Bramanti, Stéphanie Porcier, Wim Van Neer
Software Mentions: 6
Published: over 6 years ago
10.1111/j.1365-294X.2010.04961.x
Hybridization and restricted gene flow between native and introduced stocks of Alpine whitefish (Coregonus sp.) across multiple environmentsCited by: 44
Author(s): Kathrin A. Winkler, Barbara Pamminger-Lahnsteiner, Josef Wanzenböck, Steven Weiss
Software Mentions: 6
Published: over 15 years ago
10.3390/genes10100734
Developmental and Molecular Changes Underlying the Vernalization-Induced Transition to Flowering in Aquilegia coerulea (James)Cited by: 4
Author(s): Bharti Sharma, Timothy A. Batz, Rakesh Kaundal, Elena M. Kramer, Uriah R. Sanders, Valerie J. Mellano, Naveen Duhan, Rousselene B. Larson
Software Mentions: 6
Published: almost 7 years ago
10.3390/ph14020115
Simulation-Based Assessment of the Impact of Non-Adherence on Endoxifen Target Attainment in Different Tamoxifen Dosing StrategiesCited by: 4
Author(s): Anna Mueller‐Schoell, Lena Klopp‐Schulze, Robin Michelet, Madelé van Dyk, Thomas E. Mürdter, Matthias Schwab, Markus Joerger, Wilhelm Huisinga, Gerd Mikus, Charlotte Kloft
Software Mentions: 6
Published: over 5 years ago
10.1093/g3journal/jkaa043
Global translational landscape of the Candida albicans morphological transitionCited by: 8
Author(s): Vasanthakrishna Mundodi, Saket Choudhary, Andrew D. Smith, David Kadosh
Software Mentions: 6
Published: over 5 years ago
10.1186/s40638-016-0056-9
A motion sensing-based framework for robotic manipulationCited by: 7
Author(s): Hao Deng, Zeyang Xia, Shaokui Weng, Yangzhou Gan, Fang Peng, Jing Xiong
Software Mentions: 6
Published: over 9 years ago
10.1007/s00421-021-04676-7
Individual cardiovascular responsiveness to work-matched exercise within the moderate- and severe-intensity domainsCited by: 17
Author(s): Felipe Mattioni Maturana, Philipp Schellhorn, Gunnar Erz, Christof Burgstahler, Manuel Widmann, Barbara Munz, Rogério N. Soares, Juan M. Murias, Ansgar Thiel, Andreas M. Nieß
Software Mentions: 6
Published: over 5 years ago
10.1002/ece3.4237
Gene flow and Andean uplift shape the diversification of <i>Gasteracantha cancriformis</i> (Araneae: Araneidae) in Northern South AmericaCited by: 19
Author(s): Fabian C. Salgado-Roa, Carolina Pardo‐Díaz, Eloisa Lasso, Carlos F. Arias, Vera Nisaka Solferini, Camilo Salazar
Software Mentions: 6
Published: about 8 years ago
10.3389/fgene.2017.00013
The Pancreatic Islet Regulome BrowserCited by: 28
Author(s): Loris Mularoni, Mireia Ramos-Rodríguez, Lorenzo Pasquali
Software Mentions: 6
Published: over 9 years ago
10.1186/s13229-019-0263-7
A multifaceted approach for analyzing complex phenotypic data in rodent models of autismCited by: 5
Author(s): Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Sharmila Banerjee-Basu
Software Mentions: 6
Published: over 7 years ago
10.1002/ece3.5375
Morphometric convergence among European sand gobies in freshwater (Gobiiformes: Gobionellidae)Cited by: 6
Author(s): Christine E. Thacker, Christos Gkenas
Software Mentions: 6
Published: about 7 years ago
10.1186/s12935-020-01635-8
A multi-parametric prognostic model based on clinical features and serological markers predicts overall survival in non-small cell lung cancer patients with chronic hepatitis B viral infectionCited by: 4
Author(s): Shulin Chen, Hanqing Huang, Yijun Liu, Changchun Lai, Songguo Peng, Lei Zhou, Hao Chen, Yi‐Wei Xu, Xia He
Software Mentions: 6
Published: over 5 years ago
10.7554/eLife.61405
Cohesin mutations are synthetic lethal with stimulation of WNT signalingCited by: 17
Author(s): Chue Vin Chin, Jisha Antony, Sarada Ketharnathan, Anastasia Labudina, Grégory Gimenez, Kate M Parsons, Jin-Shu He, Amee J. George, Maria Michela Pallotta, Antonio Musio, Antony W. Braithwaite, Parry Guilford, Ross D. Hannan, Julia A. Horsfield
Software Mentions: 6
Published: over 5 years ago
10.3390/s21051910
Kubernetes Cluster for Automating Software Production EnvironmentCited by: 9
Author(s): Aneta Poniszewska-Marańda, Ewa Czechowska
Software Mentions: 6
Published: over 5 years ago
10.3389/fnins.2021.667011
Benchmarking Highly Parallel Hardware for Spiking Neural Networks in RoboticsCited by: 5
Author(s): Lea Steffen, Robin Koch, Stefan Ulbrich, Sven Nitzsche, Arne Roennau, Rüdiger Dillmann
Software Mentions: 6
Published: about 5 years ago
10.3389/fonc.2019.01569
The Impact of Surgery in IDH 1 Wild Type Glioblastoma in Relation With the MGMT DeregulationCited by: 13
Author(s): Francesco Marchi, Nora Sahnane, Roberta Cerutti, Debora Cipriani, Jessica Barizzi, Federico Mattia Stefanini, Samantha Epistolio, Michele Cerati, Sergio Balbi, Luca Mazzucchelli, Fausto Sessa, G. Pesce, Michael Reinert, Milo Frattini
Software Mentions: 6
Published: over 6 years ago
10.3389/fimmu.2020.606338
Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune ResponsesCited by: 33
Author(s): Christoph Ruschil, Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracskó, Martin Irmler, Johannes Beckers, Ulf Ziemann, Sven Nahnsen, Gregory P. Owens, Jeffrey L. Bennett, Bernhard Hemmer, Markus C. Kowarik
Software Mentions: 6
Published: over 5 years ago
10.1186/s40644-021-00408-4
High resolution MRI-based radiomic nomogram in predicting perineural invasion in rectal cancerCited by: 17
Author(s): Yan-Song Yang, Yong-Juan Qiu, Gengbin Zheng, Hai‐Peng Gong, Yubin Ge, Yifei Zhang, Feng Feng, Yuetao Wang
Software Mentions: 6
Published: about 5 years ago
10.1186/s12864-015-1303-0
Genome-wide comparison of PU.1 and Spi-B binding sites in a mouse B lymphoma cell lineCited by: 34
Author(s): Lauren A. Solomon, Stephen K. H. Li, Jan Piskorz, Li Xu, Rodney P. DeKoter
Software Mentions: 6
Published: over 11 years ago
10.1186/1471-2105-14-164
Learning smoothing models of copy number profiles using breakpoint annotationsCited by: 44
Author(s): Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix‐Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis Bach, Jean-Philippe Vert
Software Mentions: 6
Published: about 13 years ago
10.1111/1556-4029.14482
Getting Rid of Dichotomous Sex Estimations: Why Logistic Regression Should be Preferred Over Discriminant Function AnalysisCited by: 13
Author(s): Björn Bartholdy, Elena Sandoval, Menno L. P. Hoogland, Sarah Schrader
Software Mentions: 6
Published: about 6 years ago
10.1186/s43093-020-00041-w
Machine learning predictivity applied to consumer creditworthinessCited by: 13
Author(s): Maisa Cardoso Aniceto, Flávio Barboza, Herbert Kimura
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pgen.1008516
Ligand dependent gene regulation by transient ERα clustered enhancersCited by: 17
Author(s): Bharath Saravanan, Deepanshu Soota, Zubairul Islam, Sudeshna Majumdar, Rajat Mann, Sweety Meel, Umer Farooq, Kaivalya Walavalkar, Srimonta Gayen, Anurag Kumar Singh, Sridhar Hannenhalli, Dimple Notani
Software Mentions: 6
Published: over 6 years ago
10.3389/fgene.2021.668311
Construction of a circRNA-Related Prognostic Risk Score Model for Predicting the Immune Landscape of Lung AdenocarcinomaCited by: 0
Author(s): Huawei Li, Jun Wang, Linyou Zhang
Software Mentions: 6
Published: almost 5 years ago
10.1186/1471-2105-15-138
An R package that automatically collects and archives details for reproducible computingCited by: 15
Author(s): Zhifa Liu, Stanley Pounds
Software Mentions: 6
Published: about 12 years ago
10.1186/1471-2105-14-38
FANTOM: Functional and taxonomic analysis of metagenomesCited by: 34
Author(s): Kemal Sanli, Fredrik Karlsson, Intawat Nookaew, Jens Nielsen
Software Mentions: 6
Published: over 13 years ago
10.1371/journal.pgen.1004994
Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin ProfilingCited by: 147
Author(s): Kristofer Davie, Jelle Jacobs, Mardelle Atkins, Delphine Potier, Valerie Christiaens, Georg Halder, Stein Aerts
Software Mentions: 6
Published: over 11 years ago
10.1128/mBio.01007-20
The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog <i>ftsZ2</i> To Control Cell Division in ArchaeaCited by: 15
Author(s): Cynthia L. Darnell, Jenny Z. Zheng, Sean Wilson, R Bertoli, Alexandre W. Bisson‐Filho, Edward B. Garner, Amy K. Schmid
Software Mentions: 6
Published: almost 6 years ago
10.3389/fonc.2019.01064
Radiomic Nomogram Improves Preoperative T Category Accuracy in Locally Advanced Laryngeal CarcinomaCited by: 21
Author(s): Fei Wang, Bin Zhang, Xiangjun Wu, Lizhi Liu, Fang Jin, Justin Chen, Minmin Li, Zhuozhi Chen, Yueyue Li, Di Dong, Jie Tian, Shuixing Zhang
Software Mentions: 6
Published: over 6 years ago