10.1371/journal.pone.0201410

A low FODMAP diet is associated with changes in the microbiota and reduction in breath hydrogen but not colonic volume in healthy subjects
Cited by: 70
Author(s): Tim J. Sloan, Jonna Jalanka, Giles Major, Shanthi Krishnasamy, Sue Pritchard, Salah Abdelrazig, Katri Korpela, Gulzar Singh, C Mulvenna, Caroline L. Hoad, Luca Marciani, David A. Barrett, Miranda Lomer, Willem M. de Vos, Penny Gowland, Robin C. Spiller
Software Mentions: 1
Published: over 8 years ago

10.1002/JLB.3A0120-001RRR

Monocytes differentiated into macrophages and dendritic cells in the presence of human IFN-λ3 or IFN-λ4 show distinct phenotypes
Cited by: 7
Author(s): Manjarika De, Anand Bhushan, Sreedhar Chinnaswamy
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186872

Systematic Analysis of Cold Stress Response and Diurnal Rhythm Using Transcriptome Data in Rice Reveals the Molecular Networks Related to Various Biological Processes
Cited by: 7
Author(s): Woo‐Jong Hong, Jiang Xu, Hye Ryun Ahn, Juyoung Choi, Seong-Ryong Kim, Ki‐Hong Jung
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21176222

Enantiomerization of Axially Chiral Biphenyls: Polarizable MD Simulations in Water and Butylmethylether
Cited by: 4
Author(s): Veronika Zeindlhofer, Phillip S. Hudson, Ádám Márk Pálvölgyi, M. Welsch, Mazin Almarashi, H. Lee Woodcock, Bernard R. Brooks, Katharina Bica-Schröder, Christian Schröder
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21165784

Predicting the Development of Anti-Drug Antibodies against Recombinant alpha-Galactosidase A in Male Patients with Classical Fabry Disease
Cited by: 7
Author(s): Sanne J. van der Veen, Wytze J. Vlietstra, Laura van Dussen, André B. P. Kuilenburg, Marcel G. W. Dijkgraaf, Malte Lenders, Eva Brand, Christoph Wanner, Derralynn Hughes, Perry Elliott, Carla E. M. Hollak, Mirjam Langeveld
Software Mentions: 1
Published: about 6 years ago

10.1136/jitc-2020-001392

Antimetabolite pemetrexed primes a favorable tumor microenvironment for immune checkpoint blockade therapy
Cited by: 24
Author(s): Chia-Sing Lu, Ching-Wen Lin, Ya‐Hsuan Chang, Hsuan‐Yu Chen, Wei-Chia Chung, Wei-Yun Lai, Chao‐Chi Ho, Tong Hong Wang, Chi-Yuan Chen, Chen-Lin Yeh, Sean M. Wu, Shuping Wang, Pan‐Chyr Yang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0143951

Leukocyte Telomere Length in Young Adults Born Preterm: Support for Accelerated Biological Ageing
Cited by: 22
Author(s): Carolina C J Smeets, Veryan Codd, Nilesh J. Samani, Anita C S Hokken-Koelega
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijerph16234718

The State-of-the Art of Environmental Toxicogenomics: Challenges and Perspectives of “Omics” Approaches Directed to Toxicant Mixtures
Cited by: 33
Author(s): Charles Ferreira Martins, Kristian Dreij, Pedro M. Costa
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.23511

CancerDiscover: an integrative pipeline for cancer biomarker and cancer class prediction from high-throughput sequencing data
Cited by: 8
Author(s): Akram Mohammed, Greyson Biegert, Jiřı́ Adamec, Tomáš Helikar
Software Mentions: 1
Published: almost 9 years ago

10.1111/mpp.12886

The transcription factor Zt107320 affects the dimorphic switch, growth and virulence of the fungal wheat pathogen<i>Zymoseptoria tritici</i>
Cited by: 20
Author(s): Michael Habig, Sharon Marie Bahena-Garrido, Friederike Barkmann, Janine Haueisen, Eva H. Stukenbrock
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.11764

Effect of genetic background on the evolution of Vancomycin-Intermediate <i>Staphylococcus aureus</i> (VISA)
Cited by: 7
Author(s): Michelle Su, Michelle H Davis, Jessica Peterson, Claudia Solís-Lemus, Sarah W. Satola, Timothy D. Read
Software Mentions: 1
Published: over 5 years ago

10.1111/irv.12837

The effect of COVID‐19 stay‐at‐home order and campus closure on the prevalence of acute respiratory infection symptoms in college campus cohorts
Cited by: 2
Author(s): Oluwasanmi Adenaiye, Paul Jacob Bueno de Mesquita, Qiong Wu, Felix T. Hong, Jianyu Lai, Shuo Chen, Donald K. Milton
Software Mentions: 1
Published: over 5 years ago

10.4049/jimmunol.1400943

Themis2 Is Not Required for B Cell Development, Activation, and Antibody Responses
Cited by: 12
Author(s): Harald Hartweger, Edina Schweighoffer, Sophia Davidson, Matthew J. Peirce, Andreas Wack, Victor L. J. Tybulewicz
Software Mentions: 1
Published: over 12 years ago

10.3390/s20216135

New Procedure for the Kinematic and Power Analysis of Cyclists in Indoor Training
Cited by: 1
Author(s): J.A. Calvo, Carolina Álvarez‐Caldas, José Luis San Román García, Ramón Gutiérrez-Moizant
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.02270

Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4
Cited by: 10
Author(s): Magdalena M. Felczak, Tyler B. Jacobson, Wai Kit Ong, Daniel Amador‐Noguez, Michaela A. TerAvest
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2020.00759

INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species
Cited by: 7
Author(s): Stefano de Pretis, Mattia Furlan, Mattia Pelizzola
Software Mentions: 1
Published: over 6 years ago

10.1016/j.ijpddr.2016.09.005

Profiling the macrofilaricidal effects of flubendazole on adult female Brugia malayi using RNAseq
Cited by: 13
Author(s): Maeghan O’Neill, Cristina Ballesteros, Lucienne Tritten, Erica Burkman, Weam I. Zaky, Jianguo Xia, Andrew R. Moorhead, Steven A. Williams, Timothy G. Geary
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12859-019-2655-2

InTAD: chromosome conformation guided analysis of enhancer target genes
Cited by: 14
Author(s): Konstantin Okonechnikov, Serap Erkek, Jan O. Korbel, Stefan M. Pfister, Lukas Chávez
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12977-018-0409-2

A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle delivery
Cited by: 20
Author(s): Ferdinand Roesch, Molly OhAinle, Michael Emerman
Software Mentions: 1
Published: over 8 years ago

10.1111/irv.12591

Comparison of hemagglutination inhibition, single radial hemolysis, virus neutralization assays, and ELISA to detect antibody levels against seasonal influenza viruses
Cited by: 41
Author(s): Claudia Maria Trombetta, Edmond J. Remarque, Daniëlla Mortier, Emanuele Montomoli
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2021.107413

Data on RNA-seq analysis of Drosophila melanogaster during ageing
Cited by: 2
Author(s): Morteza Bajgiran, Azali Azlan, Shaharum Shamsuddin, Ghows Azzam, Mardani Abdul Halim
Software Mentions: 1
Published: about 5 years ago

10.1016/j.meegid.2015.06.014

Wild waterfowl migration and domestic duck density shape the epidemiology of highly pathogenic H5N8 influenza in the Republic of Korea
Cited by: 75
Author(s): Sarah C. Hill, Youn‐Jeong Lee, Bingbing Song, Hyun-Mi Kang, Eun‐Kyoung Lee, Amanda Hanna, Marius Gilbert, Ian H. Brown, Oliver G. Pybus
Software Mentions: 1
Published: over 11 years ago

10.1186/1741-7015-7-2

Inhaled drugs to reduce exacerbations in patients with chronic obstructive pulmonary disease: a network meta-analysis
Cited by: 109
Author(s): Milo A. Puhan, Lucas M. Bachmann, Jos Kleijnen, Gerben ter Riet, Alphons G.H. Kessels
Software Mentions: 1
Published: almost 18 years ago

10.1186/s13000-014-0212-x

The significance of ectopic crypt formation in the differential diagnosis of colorectal polyps
Cited by: 5
Author(s): Mi‐Jung Kim, Eunjung Lee, Sung-Min Chun, Se-Jin Jang, Do Sun Kim, Dong Hoon Lee, Eui Gon Youk
Software Mentions: 1
Published: almost 12 years ago

10.1186/1472-6920-11-36

Improving identification and management of partner violence: examining the process of academic detailing: a qualitative study
Cited by: 8
Author(s): Elizabeth A. Edwardsen, Susan H. Horwitz, Naomi Pless, Helena D le Roux, Kevin Fiscella
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0175315

Transcriptomic variation of eyestalk reveals the genes and biological processes associated with molting in Portunus trituberculatus
Cited by: 26
Author(s): Jianjian Lv, Longtao Zhang, Ping Liu, Jian Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0244157

A proteomics-based method for identifying antigens within immune complexes
Cited by: 4
Author(s): Stephanie Menikou, Andrew McArdle, Mingshi Li, Myrsini Kaforou, Paul Langford, Michael Levin
Software Mentions: 1
Published: almost 6 years ago

10.1186/1753-6561-8-S5-S7

Regularized group regression methods for genomic prediction: Bridge, MCP, SCAD, group bridge, group lasso, sparse group lasso, group MCP and group SCAD
Cited by: 27
Author(s): Joseph O. Ogutu, Hans‐Peter Piepho
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0040224

Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis
Cited by: 70
Author(s): Jianchao Ma, Christopher I. Amos
Software Mentions: 1
Published: over 14 years ago

10.1186/s12957-018-1489-0

Introducing novel and comprehensive models for predicting recurrence in breast cancer using the group LASSO approach: are estimates of early and late recurrence different?
Cited by: 5
Author(s): Majid Akrami, Peyman Arasteh, Tannaz Eghbali, Hadi Raeisi Shahraki, Sedigheh Tahmasebi, Vahid Zangouri, Abbas Rezaianzadeh, Abdolrasoul Talei
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1007068

Leveraging genetic interactions for adverse drug-drug interaction prediction
Cited by: 15
Author(s): Sheng Qian, Siqi Liang, Haiyuan Yu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-016-0755-y

Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli
Cited by: 1
Author(s): Rogelio Hernández-Tamayo, Gonzalo Arturo Torres Tejerizo, Susana Brom, David Romero
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0094879

Development and Validation of a Prediction Model for Tube Feeding Dependence after Curative (Chemo-) Radiation in Head and Neck Cancer
Cited by: 30
Author(s): K. Wopken, H.P. Bijl, Arjen van der Schaaf, Miranda E.M.C. Christianen, O. Chouvalova, Sjoukje F. Oosting, Bernard F. A. M. van der Laan, Jan Roodenburg, C. René Leemans, Ben J. Slotman, P. Doornaert, Roel J.H.M. Steenbakkers, Irma M. Verdonck‐de Leeuw, Johannes A. Langendijk
Software Mentions: 1
Published: over 12 years ago

10.1038/s41368-019-0070-1

Transcriptome analysis of ankylosed primary molars with infraocclusion
Cited by: 3
Author(s): Annie Tong, Yuh-Lit Chow, Katie Xu, Rita Hardiman, Paul M. Schneider, Seong‐Seng Tan
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2020.105805

Transcriptomic dataset of Mycolicibacterium smegmatis exposed to an imidazo[1,2-b][1,2,4,5]tetrazine
Cited by: 1
Author(s): Aleksey A. Vatlin, Ksenia M. Klimina, Svetlana G. Frolova, В. Н. Даниленко, Д. А. Маслов
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1005347

Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression
Cited by: 14
Author(s): William Poole, Kalle Leinonen, Ilya Shmulevich, Theo Knijnenburg, Brady Bernard
Software Mentions: 1
Published: almost 10 years ago

10.1186/gm524

Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
Cited by: 163
Author(s): Benjamin J. Raphael, Jason R. Dobson, Layla Oesper, Fabio Vandin
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jprot.2014.12.006

SILAC-iPAC: A quantitative method for distinguishing genuine from non-specific components of protein complexes by parallel affinity capture
Cited by: 8
Author(s): Johanna S. Rees, Kathryn S. Lilley, Antony P. Jackson
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2377-13-11

Intensified secondary prevention intending a reduction of recurrent events in TIA and minor stroke patients (INSPiRE-TMS): a protocol for a randomised controlled trial
Cited by: 25
Author(s): Stefanie Leistner, Georg Michelson, Inga Laumeier, Michael Ahmadi, Maureen Smyth, Gabriele Nieweler, Wolfram Doehner, Jan Sobesky, Jochen B. Fiebach, Peter Marx, O. Busse, Friedrich Köhler, Holger Poppert, Martin L J Wimmer, Thomas Knoll, Paul von Weitzel-Mudersbach, Heinrich J. Audebert
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13027-021-00347-6

Low expression of NSD1, NSD2, and NSD3 define a subset of human papillomavirus-positive oral squamous carcinomas with unfavorable prognosis
Cited by: 8
Author(s): Steven F. Gameiro, Farhad Ghasemi, Peter YF. Zeng, Neil Mundi, Christopher J. Howlett, Paul Plantinga, John W. Barrett, Anthony C. Nichols, Joe S. Mymryk
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21051580

Disparity between Inter-Patient Molecular Heterogeneity and Repertoires of Target Drugs Used for Different Types of Cancer in Clinical Oncology
Cited by: 16
Author(s): Marianna Zolotovskaia, Maxim Sorokin, Ivan Petrov, Elena Poddubskaya, Alexey Moiseev, Marina Sekacheva, Nicolas Borisov, Victor Tkachev, Andrew Garazha, А. Д. Каприн, Peter Shegay, Alf Giese, Ella Kim, S. A. Rumyantsev, Anton Buzdin
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/5517747

Delivery of miR-224-5p by Exosomes from Cancer-Associated Fibroblasts Potentiates Progression of Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Yifei Liu, Wenqiang Fu, Xiaoan Cao, Shuopeng Li, Tianyu Xiong, Xiaolei Zhang, Xiaotang Wu, Ling Cheng, Yanbing Wei, Bin Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-11-S1-S38

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Cited by: 28
Author(s): Adi Mano, Tamir Tuller, Oded Béjà, Ron Y. Pinter
Software Mentions: 1
Published: almost 17 years ago

10.1155/2020/2953598

miR-139-5p Inhibits Lung Adenocarcinoma Cell Proliferation, Migration, and Invasion by Targeting MAD2L1
Cited by: 23
Author(s): Jianfeng Li, Xi He, Xiaotang Wu, Xiaohui Lu, Yixiong Huang, Yuchen Gong
Software Mentions: 1
Published: about 6 years ago

10.1186/s12876-016-0534-0

Cirrhosis related functionality characteristic of the fecal microbiota as revealed by a metaproteomic approach
Cited by: 32
Author(s): Xiao Wei, Shan Jiang, Yuye Chen, Xiangna Zhao, Huan Li, Weihua Lin, Boxing Li, Xuesong Wang, Jing Yuan, Yansong Sun
Software Mentions: 1
Published: about 10 years ago

10.3390/ma7096811

Optimization of Aluminum Stressed Skin Panels in Offshore Applications
Cited by: 0
Author(s): Dianne Van Hove, F. Soetens
Software Mentions: 1
Published: about 12 years ago

10.7150/ijms.49997

Research on the circadian clock gene HNF4a in different malignant tumors
Cited by: 0
Author(s): Mengjun Qiu, Li Zhang, Xiefan Fang, Qiuting Li, Lisheng Zhu, Bin Zhang, Shengli Yang, Zhifan Xiong
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21020553

Molecular Profile of Phage Infection: A Novel Approach for the Characterization of Erwinia Phages through qPCR
Cited by: 8
Author(s): Michael Parcey, Steven Gayder, Alan J. Castle, A. M. Svircev
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/6241469

miR-30a-5p Regulates Viability, Migration, and Invasion of Lung Adenocarcinoma Cells via Targeting ECT2
Cited by: 4
Author(s): Sangsang Chen, Xuqing Zhu, Jing Zheng, Tingting Xu, Yinmin Xu, Feng Chen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0113091

Comparative Transcriptomic Analysis of the Response to Cold Acclimation in Eucalyptus dunnii
Cited by: 18
Author(s): Yiqing Liu, Yi Jiang, Jianbin Lan, Yong Zou, Junping Gao
Software Mentions: 1
Published: almost 12 years ago

10.1155/2021/6684186

A Comprehensive Evaluation of miR-144-3p Expression and Its Targets in Laryngeal Squamous Cell Carcinoma
Cited by: 3
Author(s): Bin-Yu Mo, Jin‐Shu Pang, Wei Dai, Ya-Si Su, Wei Jiang, Su-Hua Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/1129-2377-15-S1-B24

HMTI-0197. Whole blood transcriptome analysis in migraine with aura patients: a case control study
Cited by: 0
Author(s): Agustı́n Oterino, María Toriello, Anna Esteve‐Codina, Simon Heath, J. Castillo, Jenifer Fernandez, Enar Pons, Sílvia Gutiérrez, Enrique Palacio, VG Quintanilla
Software Mentions: 1
Published: about 12 years ago

10.1038/s42003-019-0620-2

Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo
Cited by: 46
Author(s): Lukas R. Dahlin, Alida T. Gerritsen, Calvin A. Henard, Stefanie Van Wychen, Jeffrey G. Linger, Yuliya A. Kunde, Blake T. Hovde, Shawn R. Starkenburg, Matthew C. Posewitz, Michael T. Guarnieri
Software Mentions: 1
Published: about 7 years ago

10.1155/2019/4025747

A Full-Length Reference Floral Transcriptome ofBoehmeria tricuspisProvides Insights into Apomeiosis and Polyploidy
Cited by: 2
Author(s): Qing Tang, Ying Xu, Canhui Deng, Chaohua Cheng, Zhigang Dai, Zemao Yang, Chan Lee, Jianguang Su
Software Mentions: 1
Published: almost 7 years ago