10.1038/srep37767

Measuring intratumor heterogeneity by network entropy using RNA-seq data
Cited by: 49
Author(s): Youngjun Park, Sangsoo Lim, Jin Wu Nam, Sun Kim
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.3216

Analysis of genomic variation in lung adenocarcinoma patients revealed the critical role of PI3K complex
Cited by: 9
Author(s): Zhao min Deng, Lizhu Lin, Wen Qiu, Yong qun Zhang, Hong Zhong, Ping Liao, Wu Yun
Software Mentions: 4
Published: over 9 years ago

10.3389/fimmu.2018.01626

Transcriptomic Profiles of Senegalese Sole Infected With Nervous Necrosis Virus Reassortants Presenting Different Degree of Virulence
Cited by: 23
Author(s): Alejandro M. Labella, Esther García-Rosado, Isabel Bandı́n, Carlos P. Dopazo, Dolores Castro, M. Carmen Alonso, Juan J. Borrego
Software Mentions: 4
Published: about 8 years ago

10.3389/fnins.2021.671249

Multi-Dimensional Transcriptome Analysis Reveals Modulation of Cholesterol Metabolism as Highly Integrated Response to Brain Injury
Cited by: 7
Author(s): Victor Gourain, Olivier Armant, Luisa Lübke, Nicolas Diotel, Sepand Rastegar, Uwe Strähle
Software Mentions: 4
Published: about 5 years ago

10.1136/rmdopen-2020-001324

Current status of use of high throughput nucleotide sequencing in rheumatology
Cited by: 2
Author(s): Sebastian Boegel, John C. Castle, Andreas Schwarting
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-020-0514-7

Integrated analysis of a compendium of RNA-Seq datasets for splicing factors
Cited by: 2
Author(s): Peng Yu, Li Jin, Su Deng, Feiran Zhang, Petar Grozdanov, Eunice W. M. Chin, Sheree D. Martin, Laurent Vergnes, Mohammad S. Islam, Deqiang Sun, Janine M. LaSalle, Sean L. McGee, Eyleen L. K. Goh, Clinton C. MacDonald, Peng Jin
Software Mentions: 4
Published: about 6 years ago

10.3389/fimmu.2018.00182

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota
Cited by: 160
Author(s): Helen Groves, Leah Cuthbertson, Phillip James, Miriam F. Moffatt, Michael J. Cox, John S. Tregoning
Software Mentions: 4
Published: over 8 years ago

10.3390/ani10122345

The Relationship between Hunting Methods and the Sex, Age and Body Mass of Wild Boar Sus scrofa
Cited by: 8
Author(s): Robert Kamieniarz, Łukasz Jankowiak, Martyna Frątczak, Marek Panek, J Wojtczak, Piotr Tryjanowski
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10490

The ecomorphology of the shell of extant turtles and its applications for fossil turtles
Cited by: 7
Author(s): Laura Dziomber, Walter G. Joyce, Christian Foth
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2016.00390

Bidirectional Expression of Metabolic, Structural, and Immune Pathways in Early Myopia and Hyperopia
Cited by: 31
Author(s): Nina Riddell, Loretta Giummarra, Nathan E. Hall, Sheila G. Crewther
Software Mentions: 4
Published: almost 10 years ago

10.3389/fimmu.2018.01693

Immunophenotype and Transcriptome Profile of Patients With Multiple Sclerosis Treated With Fingolimod: Setting Up a Model for Prediction of Response in a 2-Year Translational Study
Cited by: 28
Author(s): Ivo Torres, C. Garcı́a, Marco Marconi, Aránzazu García-Grande, Luis Rodríguez‐Esparragoza, Vı́ctor Elvira, Elvira Ramil, Lucía Campos-Ruíz, Ruth García-Hernández, Fátima Al‐Shahrour, Coral Fustero-Torre, Alicia Sánchez-Sanz, Antonio Garcı́a-Merino, A.J. Sánchez López
Software Mentions: 4
Published: about 8 years ago

10.3389/fimmu.2021.663736

MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients
Cited by: 8
Author(s): Fatima Heinicke, Xiao Zhong, Siri Tennebø Flåm, Johannes Breidenbach, Magnus Leithaug, Marthe Thoresen Mæhlen, Siri Lillegraven, Anna‐Birgitte Aga, Ellen Sauar Norli, Maria D Mjaavatten, Espen A. Haavardsholm, Manuela Zucknick, Simon Rayner, Benedicte A. Lie
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.569295

Resveratrol Mediates the Apoptosis of Triple Negative Breast Cancer Cells by Reducing POLD1 Expression
Cited by: 18
Author(s): Zheng Liang, Yu Wan, Dandan Zhu, Mengxin Wang, Hong-Mian Jiang, Deng-Shing Huang, Lifeng Luo, Mao-jian Chen, Weiping Yang, Hong-Mian Li, Changyuan Wei
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0143412

Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory
Cited by: 10
Author(s): Yusuke Tanigaki, Takanobu Higashi, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo, Hirokazu Fukuda
Software Mentions: 4
Published: over 10 years ago

10.1186/1752-0509-3-93

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Cited by: 11
Author(s): Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
Software Mentions: 4
Published: almost 17 years ago

10.1186/s12864-017-3661-2

Detect tissue heterogeneity in gene expression data with BioQC
Cited by: 42
Author(s): Jitao David Zhang, Klas Hatje, Gregor Sturm, Clemens Broger, Martin Ebeling, Martine Burtin, Fabiola Terzi, Silvia Pomposiello, Laura Badi
Software Mentions: 4
Published: over 9 years ago

10.1186/s13024-021-00462-3

A proteomic network approach resolves stage-specific molecular phenotypes in chronic traumatic encephalopathy
Cited by: 4
Author(s): Laura Gutierrez-Quiceno, Eric B. Dammer, Ashlyn G. Johnson, James Webster, Rhythm Shah, Duc M. Duong, Luming Yin, Nicholas T. Seyfried, Victor E. Alvarez, Thor D. Stein, Ann C. McKee, Chadwick M. Hales
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.705627

Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes
Cited by: 4
Author(s): Hussein A. Abbas, Vakul Mohanty, Ruiping Wang, Yu-Ting Huang, Shaoheng Liang, Feng Wang, Jianhua Zhang, Yihua Qiu, Chenyue W. Hu, Amina A. Qutub, Monique Dail, Christopher R. Bolen, Naval Daver, Marina Konopleva, Andrew Futreal, Ken Chen, Linghua Wang, Steven M. Kornblau
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0036634

Do Natural Proteins Differ from Random Sequences Polypeptides? Natural vs. Random Proteins Classification Using an Evolutionary Neural Network
Cited by: 23
Author(s): Davide De Lucrezia, Debora Slanzi, Irene Poli, Fabio Polticelli, Giovanni Minervini
Software Mentions: 4
Published: about 14 years ago

10.3390/ani10101903

Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds
Cited by: 1
Author(s): Anna-Charlotte Doublet, Gwendal Restoux, Sébastien Fritz, Laura Balberini, Guillaume Fayolle, Chris Hozé, Dénis Laloë, Pascal Croiseau
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2019.00795

Elevated CCL19/CCR7 Expression During the Disease Process of Primary Sjögren's Syndrome
Cited by: 18
Author(s): Zhenwei Liu, Fengxia Li, Axiao Pan, Huangqi Xue, Shan Jiang, Ce Zhu, Mengmeng Jin, Jinxia Fang, Xiongzhao Zhu, Matthew A. Brown, Xiaobing Wang
Software Mentions: 4
Published: over 7 years ago

10.1038/s41597-020-0499-2

High-throughput transcriptomic and proteomic profiling of mesenchymal-amoeboid transition in 3D collagen
Cited by: 13
Author(s): Vladimı́r Čermák, Aneta Gandalovičová, Ladislav Merta, Karel Harant, Daniel Rösel, Jan Brábek
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-70641-7

Surgical procedures in the pilonidal sinus disease: a systematic review and network meta-analysis
Cited by: 32
Author(s): Siwei Bi, Kaibo Sun, Shanshan Chen, Jun Gu
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-77160-5

Pupillary light reflex in ethambutol-induced optic neuropathy
Cited by: 0
Author(s): Yung Ju Yoo, Jeong Min Hwang, Hee Kyung Yang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-015-0811-x

Sequence information gain based motif analysis
Cited by: 1
Author(s): Joan Maynou, Erola Pairó, S. Marco, Alexandre Perera
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-017-03390-9

Aberrant plasticity of peripheral sensory axons in a painful neuropathy
Cited by: 30
Author(s): Takashi Hirai, Yatendra Mulpuri, Yanbing Cheng, Zheng Xia, Wei Li, Supanigar Ruangsri, Igor Spigelman, Ichiro Nishimura
Software Mentions: 4
Published: about 9 years ago

10.3389/fpubh.2021.729559

Efficacy of COVID-19 Treatments: A Bayesian Network Meta-Analysis of Randomized Controlled Trials
Cited by: 25
Author(s): Chenyang Zhang, Huaqing Jin, Yi Feng Wen, Guosheng Yin
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.202917

Development of a prognostic index and screening of prognosis related genes based on an immunogenomic landscape analysis of bladder cancer
Cited by: 14
Author(s): Genyi Qu, Zhengsheng Liu, Guang Yang, Yong Xu, Maolin Xiang, Chaowei Tang
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.685237

Key Macrophage Responses to Infection With Mycobacterium tuberculosis Are Co-Regulated by microRNAs and DNA Methylation
Cited by: 11
Author(s): Monika Looney, Rachel Lorenc, Marc K. Halushka, Petros C. Karakousis
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-27376-3

Transcriptional analysis of adipose tissue during development reveals depot-specific responsiveness to maternal dietary supplementation
Cited by: 16
Author(s): Hernan P. Fainberg, Mark Birtwistle, Reham I. Alagal, Ahmad Alhaddad, Mark Pope, Graeme R. Davies, Rachel Woods, Marcos Castellanos, Sean May, Catharine A. Ortori, David A. Barrett, V.E.A. Perry, Frank Wiens, Bernd Stahl, Eline van der Beek, Harold S. Sacks, Helen Budge, Michael Symonds
Software Mentions: 4
Published: about 8 years ago

10.1186/s12915-015-0204-7

Hook tool manufacture in New Caledonian crows: behavioural variation and the influence of raw materials
Cited by: 26
Author(s): Barbara Christina Klump, Shoko Sugasawa, James J. H. St Clair, Christian Rutz
Software Mentions: 4
Published: over 10 years ago

10.1038/s41597-019-0141-3

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
Cited by: 8
Author(s): Antônio Pedro Camargo, Rafael Soares Correa de Souza, Patrícia de Britto Costa, Isabel Rodrigues Gerhardt, Ricardo A. Dante, Grazielle Sales Teodoro, Anna Abrahão, Hans Lambers, Marcelo Falsarella Carazzolle, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishna Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I. Min A. Chen, Natalia Ivanova, Nikos C. Kyrpides, Christa Pennacchio, Emiley A. Eloe‐Fadrosh, Paulo Arruda, Rafael S. Oliveira
Software Mentions: 4
Published: about 7 years ago

10.1186/s12861-015-0085-6

Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species
Cited by: 6
Author(s): Christian Larney, Timothy L. Bailey, Peter Koopman
Software Mentions: 4
Published: almost 11 years ago

10.3390/ijms20123101

Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation
Cited by: 29
Author(s): Saurabh Gupta, Yanni Dong, Paul P. Dijkwel, Bernd Mueller‐Roeber, Tsanko Gechev
Software Mentions: 4
Published: about 7 years ago

10.3389/fmed.2021.730018

Optimal Positive End Expiratory Pressure Levels in Ventilated Patients Without Acute Respiratory Distress Syndrome: A Bayesian Network Meta-Analysis and Systematic Review of Randomized Controlled Trials
Cited by: 0
Author(s): Jing Zhou, Zhihua Lin, Xiu-Mei Deng, Baiyun Liu, Yu Zhang, Yongxin Zheng, Hairong Zheng, Yingzhi Wang, Yan H. Lai, Weixiang Huang, Xiaoqing Liu, Weiqun He, Yang Xu, Yimin Li, Yongbo Huang, Ling Sang
Software Mentions: 4
Published: almost 5 years ago

10.1002/cbf.3491

Identification and functional analysis of long non‐coding RNAs in the synovial membrane of osteoarthritis patients
Cited by: 7
Author(s): Xiaolong Shui, Qipeng Xie, Shaomin Chen, Chengwei Zhou, Jianzhong Kong, Yi Wang
Software Mentions: 4
Published: over 6 years ago

10.1186/s41065-021-00193-x

Identification of glioblastoma immune subtypes and immune landscape based on a large cohort
Cited by: 5
Author(s): Huiyuan Zhang, Ying Chen
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41597-019-0088-4

Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity
Cited by: 7
Author(s): Julia H. Chariker, Cynthia Gomes, Fiona Brabazon, Kathryn A. Harman, Sujata Saraswat Ohri, David S.K. Magnuson, Scott R. Whittemore, Jeffrey C. Petruska, Eric C. Rouchka
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2020.574853

CXCL12 and IL7R as Novel Therapeutic Targets for Liver Hepatocellular Carcinoma Are Correlated With Somatic Mutations and the Tumor Immunological Microenvironment
Cited by: 5
Author(s): Kui He, Shuai Liu, Yong Xia, Jianguo Xu, Fei Liu, Jing Xiao, Yong Li, Qi Ding, Ligong Lu, Guoan Xiang, Meixiao Zhan
Software Mentions: 4
Published: over 5 years ago

10.1093/beheco/arz013

Breeding success but not mate choice is phenotype- and context-dependent in a color polymorphic raptor
Cited by: 8
Author(s): Laura Gangoso, Jordi Figuerola
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-018-0404-9

Commensal microbiota modulate gene expression in the skin
Cited by: 126
Author(s): Jacquelyn S. Meisel, Georgia Sfyroera, Casey Bartow‐McKenney, Ciara Gimblet, Julia Bugayev, Joseph Horwinski, Brian Kim, Jonathan R. Brestoff, Amanda S. Tyldsley, Qi Zheng, Brendan P. Hodkinson, David Artis, Elizabeth A. Grice
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.6468

Leaf‐footed bugs possess multiple hidden contrasting color signals, but only one is associated with increased body size
Cited by: 5
Author(s): Zachary Emberts, Charles H. Miller, Chelsea Skojec, Rachel M. Shepherd, Colette M. St. Mary
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-020-6662-5

Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA
Cited by: 12
Author(s): Hiro Takahashi, Noriya Hayashi, Yuta Hiragori, Shun Sasaki, Taichiro Motomura, Yoshihisa Yamashita, Shuichi Naito, Atsushi Takahashi, Kazuyuki Fuse, Kenji Satou, Toshinori Endo, Shoko Kojima, Hitoshi Onouchi
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.695699

Integrated Analysis of mRNA- and miRNA-Seq in the Ovary of Rare Minnow Gobiocypris rarus in Response to 17α-Methyltestosterone
Cited by: 3
Author(s): Shaozhen Liu, Qiong Yang, Yue Chen, Qing Liu, Weiwei Wang, Jing Song, Yao Zheng, Wenzhong Liu
Software Mentions: 4
Published: about 5 years ago

10.1098/rsbl.2021.0309

Host and brood parasite coevolutionary interactions covary with comparative patterns of the avian visual system
Cited by: 1
Author(s): Ian J. Ausprey, Márk E. Hauber
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-016-2729-8

A systematic, large-scale comparison of transcription factor binding site models
Cited by: 13
Author(s): Daniela Hombach, Jana Marie Schwarz, Peter N. Robinson, Markus Schuelke, Dominik Seelow
Software Mentions: 4
Published: about 10 years ago

10.1002/ece3.3504

Elevational diversity gradients of Tibetan loaches: The relative roles of ecological and evolutionary processes
Cited by: 8
Author(s): Chenguang Feng, Yongjie Wu, Fei Tian, Chao Tong, Yongtao Tang, Renyi Zhang, Guogang Li, Kai Zhao
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12866-019-1500-0

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Cited by: 101
Author(s): Vincent Somerville, Stefanie Lutz, Michael Schmid, Daniel Frei, Aline Moser, Stefan Irmler, Jürg E. Frey, Christian H. Ahrens
Software Mentions: 4
Published: about 7 years ago

10.1155/2014/736798

Computational Evidence of NAGNAG Alternative Splicing in Human Large Intergenic Noncoding RNA
Cited by: 2
Author(s): Xiaoyong Sun, Simon Lin, Xiaoyan Yan
Software Mentions: 4
Published: over 12 years ago

10.3389/fgene.2021.662468

Hypoxia-Induced miR-148a Downregulation Contributes to Poor Survival in Colorectal Cancer
Cited by: 15
Author(s): Stepan Nersisyan, A. V. Galatenko, Milena Chekova, Alexander G. Tonevitsky
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2018.00482

Transcriptomic Alterations in Lung Adenocarcinoma Unveil New Mechanisms Targeted by the TBX2 Subfamily of Tumor Suppressor Genes
Cited by: 10
Author(s): Athar Khalil, Batoul Dekmak, Fouad Boulos, Jake Kantrowitz, Avrum Spira, Junya Fujimoto, Humam Kadara, Nehmé El-Hachem, Georges Nemer
Software Mentions: 4
Published: almost 8 years ago

10.3390/brainsci11020230

Sentence Recall in Latent and Anomic Aphasia: An Exploratory Study of Semantics and Syntax
Cited by: 6
Author(s): Christos Salis, Nadine Martin, Laura K. Reinert
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.686

Different modes of evolution in males and females generate dichromatism in fairy-wrens (Maluridae)
Cited by: 43
Author(s): Allison E. Johnson, Joseph Price, Stephen Pruett‐Jones
Software Mentions: 4
Published: about 13 years ago

10.3390/brainsci10110813

Shedding Light on the Effects of Moderate Acute Exercise on Working Memory Performance in Healthy Older Adults: An fNIRS Study
Cited by: 11
Author(s): Katharina Stute, Nicole Hudl, Robert Stojan, Claudia Voelcker‐Rehage
Software Mentions: 4
Published: almost 6 years ago

10.1007/978-1-4939-9074-0_25

Sharing Programming Resources Between Bio* Projects
Cited by: 4
Author(s): Raoul Jean Pierre Bonnal, Andy Yates, Naohisa Goto, Laurent Gautier, Scooter Willis, Christopher J. Fields, Toshiaki Katayama, Pjotr Prins
Software Mentions: 4
Published: over 7 years ago

10.3390/brainsci11080996

The Kinematics of Social Action: Visual Signals Provide Cues for What Interlocutors Do in Conversation
Cited by: 6
Author(s): James P. Trujillo, Judith Holler
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.01361

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data
Cited by: 16
Author(s): Sateesh Peri, Susan C. Roberts, Isabella R Kreko, Lauren B McHan, Alexandra Naron, Archana Ram, Rebecca L. Murphy, Eric Lyons, Brian D. Gregory, Upendra Kumar Devisetty, Andrew D. L. Nelson
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.652063

Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles
Cited by: 15
Author(s): Nicolas Borisov, Anna Sergeeva, Maria Suntsova, Mikhail Raevskiy, Нуршат Гайфуллин, Л. П. Менделеева, Alexander Gudkov, Maria Nareiko, Andrew Garazha, Victor Tkachev, Xinmin Li, Maxim Sorokin, В. Л. Сурин, Anton Buzdin
Software Mentions: 4
Published: over 5 years ago

10.1186/s13021-019-0124-x

Building houses and managing lawns could limit yard soil carbon for centuries
Cited by: 10
Author(s): Morgan E. Peach, Laura A. Ogden, Eleni A. Mora, Andrew J. Friedland
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0097508

Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish
Cited by: 36
Author(s): Andrew Jackson, Brice X. Semmens, Yvonne Sadovy de Mitcheson, Richard S. Nemeth, Scott A. Heppell, Phillippe G. Bush, Alfonso Aguilar‐Perera, John A. B. Claydon, Marta C. Calosso, Kathleen Sullivan Sealey, Michelle T. Schärer, Giacomo Bernardi
Software Mentions: 4
Published: about 12 years ago

10.1093/database/bav047

GraP: platform for functional genomics analysis of Gossypium raimondii
Cited by: 12
Author(s): Liwei Zhang, Jinyan Guo, Qi You, Xin Yi, Yi Ling, Wenying Xu, Jinping Hua, Zhen Su
Software Mentions: 4
Published: over 11 years ago

10.3389/fgene.2021.627907

Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe Epilepsy
Cited by: 13
Author(s): Andreia Gomes‐Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.664260

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: about 5 years ago

10.3390/medicina57060606

Characteristics of Pedaling Muscle Stiffness among Cyclists of Different Performance Levels
Cited by: 1
Author(s): Isaac López-Laval, Rafel Cirer-Sastre, Francisco Corbi, Sebastian Sitko
Software Mentions: 4
Published: about 5 years ago

10.1007/s00430-020-00691-1

Bacterial aggregate size determines phagocytosis efficiency of polymorphonuclear leukocytes
Cited by: 31
Author(s): Morten Alhede, Marcel Lorenz, Blaine Gabriel Fritz, Peter Østrup Jensen, Hans Christian Ring, Lene Bay, Thomas Bjarnsholt
Software Mentions: 4
Published: almost 6 years ago

10.3390/plants9111589

Effects of Exogenous Salicylic Acid on Drought Response and Characterization of Dehydrins in Impatiens walleriana
Cited by: 11
Author(s): Dragana D Antonić, Angelina Subotić, Milan Dragićević, Danijel Pantelić, Snežana Milošević, Ana Simonović, Ivana Momčilović
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7030072

Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
Cited by: 3
Author(s): Martina Gonzalez Mateu, Cedric Evan Park, Cullen Patrick McAskill, Andrew H. Baldwin, Stephanie A. Yarwood
Software Mentions: 4
Published: over 7 years ago

10.1038/s41597-019-0051-4

Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media
Cited by: 14
Author(s): Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M. Monk, Pieter C. Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard Ø. Palsson, Adam M. Feist
Software Mentions: 4
Published: over 7 years ago

10.1111/cogs.12910

Order Matters! Influences of Linear Order on Linguistic Category Learning
Cited by: 12
Author(s): Dorothée B. Hoppe, Jacolien van Rij, Petra Hendriks, Michael Ramscar
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2020.588313

High Throughput Sequencing of MicroRNA in Rainbow Trout Plasma, Mucus, and Surrounding Water Following Acute Stress
Cited by: 21
Author(s): Heather Ikert, Michael Lynch, Andrew C. Doxey, John P. Giesy, Mark R. Servos, Barbara A. Katzenback, Paul M. Craig
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1002415

A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures
Cited by: 30
Author(s): Chia Huey Ooi, Hue Kian Oh, H Wang, Angie Lay Keng Tan, Jeanie Wu, Ming‐Hui Lee, Sun Young Rha, Hyun Cheol Chung, David M. Virshup, Patrick Tan
Software Mentions: 4
Published: over 14 years ago

10.12688/f1000research.6831.1

Molecular Dynamics Simulations of the Temperature Induced Unfolding of Crambin Follow the Arrhenius Equation.
Cited by: 3
Author(s): Andrew R. Dalby, Mohd Shahir Shamsir
Software Mentions: 4
Published: almost 11 years ago

10.3389/fgene.2019.01036

Profiling Transcriptional Regulation and Functional Roles of Schistosoma mansoni c-Jun N-Terminal Kinase
Cited by: 5
Author(s): Sandra Grossi Gava, Naiara Clemente Tavares, Franco H. Falcone, Guilherme Oliveira, Marina Moraes Mourão
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms8071061

Limited Response of Indigenous Microbes to Water and Nutrient Pulses in High-Elevation Atacama Soils: Implications for the Cold–Dry Limits of Life on Earth
Cited by: 2
Author(s): Lara Vimercati, Clifton P. Bueno de Mesquita, Steven K. Schmidt
Software Mentions: 4
Published: about 6 years ago

10.1038/srep38439

RNA sequencing of chorionic villi from recurrent pregnancy loss patients reveals impaired function of basic nuclear and cellular machinery
Cited by: 40
Author(s): Siim Sõber, Kristiina Rull, Mario Reiman, Piret Ilisson, Pirkko Mattila, Maris Laan
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.205

Size and shape in the evolution of ant worker morphology
Cited by: 21
Author(s): Márcio R. Pie, Marcel Kruchelski Tschá
Software Mentions: 4
Published: almost 13 years ago

10.7717/peerj.8574

The effects of phylogeny, body size, and locomotor behavior on the three-dimensional shape of the pelvis in extant carnivorans
Cited by: 8
Author(s): Kristi Lewton, Ryan Brankovic, William A. Byrd, Daniela Cruz, Jocelyn Morales, Sung Sik Shin
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.2402

Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees
Cited by: 29
Author(s): Kyle G. Dexter, Jérôme Chave
Software Mentions: 4
Published: almost 10 years ago

10.3389/fendo.2021.665666

Comprehensive Analysis of the Expression and Prognostic Value of SPINT1/2 in Breast Carcinoma
Cited by: 3
Author(s): Qi Wu, Guang Yin, Jing Luo, Yingzi Zhang, Tiantian Ai, Jiao Tian, Yudi Jin, Jinwei Lei, Shengchun Liu
Software Mentions: 4
Published: about 5 years ago

10.3389/fphys.2021.616055

Phenotypic Changes in T Cell and Macrophage Subtypes in Perivascular Adipose Tissues Precede High-Fat Diet-Induced Hypertension
Cited by: 6
Author(s): Ramya Kumar, Yongliang Yang, Andres Contreras, Hannah Garver, Sudin Bhattacharya, Gregory D. Fink, Cheryl E. Rockwell, Stephanie W. Watts
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.202765

Pan-cancer analysis identifies ITIH1 as a novel prognostic indicator for hepatocellular carcinoma
Cited by: 7
Author(s): Q Q Chang, Ting Mao, Tao Yan, Tao Dong, Xuan-xuan Tang, Ge Gao, Zi‐jun Xu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0220335

Risk factors for Neospora caninum, bovine viral diarrhoea virus, and Leptospira interrogans serovar Hardjo infection in smallholder cattle and buffalo in Lao PDR
Cited by: 23
Author(s): Luisa Olmo, Michael P. Reichel, S. Nampanya, Syseng Khounsy, Lloyd Christian Wahl, Bethanie A. Clark, Peter Thomson, Peter Windsor, R. D. Bush
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0184321

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations
Cited by: 7
Author(s): Salome Horsch, Dominik Kopczynski, Elias Kuthe, Jan Baumbach, Sven Rahmann, Jörg Rahnenführer
Software Mentions: 4
Published: almost 9 years ago

10.1093/bioinformatics/btu749

M3D: a kernel-based test for spatially correlated changes in methylation profiles
Cited by: 27
Author(s): Tom Mayo, Gabriele Schweikert, Guido Sanguinetti
Software Mentions: 4
Published: over 11 years ago

10.3389/fendo.2019.00840

Role of MicroRNAs in the Regulation of Subcutaneous White Adipose Tissue in Individuals With Obesity and Without Type 2 Diabetes
Cited by: 17
Author(s): Olga Brovkina, А Г Никитин, Д. С. Ходырев, Ekaterina A. Shestakova, Igor A. Sklyanik, Anna S. Panevina, Iurii Stafeev, Mikhail Menshikov, Anastasiya A. Kobelyatskaya, Anatoliy Yurasov, V. S. Fedenko, Yu I Yashkov, М. В. Шестакова
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-017-0993-0

Phylogenetic conservatism in skulls and evolutionary lability in limbs – morphological evolution across an ancient frog radiation is shaped by diet, locomotion and burrowing
Cited by: 40
Author(s): Marta Vidal‐García, J. Scott Keogh
Software Mentions: 4
Published: about 9 years ago

10.3389/fpls.2018.01864

Revisiting the Soybean GmNAC Superfamily
Cited by: 37
Author(s): Bruno Paes de Melo, Otto Teixeira Fraga, José Cleydson Ferreira da Silva, Dalton O Ferreira, Otávio J. B. Brustolini, Paola A. Carpinetti, João Paulo Machado, Pedro A. B. Reis, Elizabeth P. B. Fontes
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0235932

Limited overall impacts of ectomycorrhizal inoculation on recruitment of boreal trees into Arctic tundra following wildfire belie species-specific responses
Cited by: 4
Author(s): Rebecca E. Hewitt, F. Stuart Chapin, Teresa N. Hollingsworth, Michelle C. Mack, A. V. Rocha, D. Lee Taylor
Software Mentions: 4
Published: about 6 years ago

10.3390/ani11071885

Post-Thaw Sperm Quality and Functionality in the Autochthonous Pig Breed Gochu Asturcelta
Cited by: 8
Author(s): J. N. Caamaño, Carolina Tamargo, Inmaculada Parrilla, Felipe Martínez‐Pastor, Lorena Padilla, Amer Salman, Carmen Fueyo, A Víctor Fernández, María José Merino, Tania Iglesias, C.O. Hidalgo
Software Mentions: 4
Published: about 5 years ago

10.1186/s12974-016-0720-6

MOG-IgG in NMO and related disorders: a multicenter study of 50 patients. Part 4: Afferent visual system damage after optic neuritis in MOG-IgG-seropositive versus AQP4-IgG-seropositive patients
Cited by: 197
Author(s): Florence Pache, Hanna Zimmermann, Janine Mikolajczak, Stefan Schumacher, Anna Lacheta, Frederike Cosima Oertel, Judith Bellmann‐Strobl, Sven Jarius, Brigitte Wildemann, Markus Reindl, Amy Waldman, Kerstin Soelberg, Nasrin Asgari, Marius Ringelstein, Orhan Aktaş, Nikolai Gross, Mathias Buttmann, Thomas Ach, Klemens Ruprecht, Friedemann Paul, Alexander U. Brandt
Software Mentions: 4
Published: almost 10 years ago

10.3389/fcell.2020.00808

Integrated Microarray and RNAseq Transcriptomic Analysis of Retinal Pigment Epithelium/Choroid in Age-Related Macular Degeneration
Cited by: 10
Author(s): Dhanach Dhirachaikulpanich, Xin Li, Louise F. Porter, Luminita Paraoan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2020.00180

Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach
Cited by: 32
Author(s): Jiali Yu, Anna O. Conrad, Véronique Decroocq, Tetyana Zhebentyayeva, Daniel E. Williams, Dennis Bennett, Guillaume Roch, Jean Marc Audergon, Christopher Dardick, Zongrang Liu, Albert G. Abbott, Margaret Staton
Software Mentions: 4
Published: over 6 years ago

10.1186/s12920-018-0403-5

Progression-specific genes identified in microdissected formalin-fixed and paraffin-embedded tissue containing matched ductal carcinoma in situ and invasive ductal breast cancers
Cited by: 12
Author(s): S Schultz, Harald Bartsch, Karl Sotlar, Karina Petat-Dutter, Michael Bonin, Steffen Kahlert, Nadia Harbeck, Ulrich Vogel, Harald Seeger, Tanja Fehm, Hans Neubauer
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0256605

Development of strategic social information seeking: Implications for cumulative culture
Cited by: 2
Author(s): Kirsten H. Blakey, Eva Rafetseder, Mark Atkinson, Elizabeth Renner, Fía Cowan-Forsythe, Shivani J. Sati, Christine A. Caldwell
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2020.602731

CircRNA hsa_circ_0008500 Acts as a miR-1301-3p Sponge to Promote Osteoblast Mineralization by Upregulating PADI4
Cited by: 11
Author(s): Qiaoli Zhai, Yi Zhao, Linping Wang, Yan Dai, Peiqing Zhao, Xinxin Xiang, Kui Liu, Wei Du, Wenxiu Tian, Baoye Yang, Tao Li, Lianqing Wang
Software Mentions: 4
Published: over 5 years ago

10.2196/22422

Deep Neural Network for Reducing the Screening Workload in Systematic Reviews for Clinical Guidelines: Algorithm Validation Study
Cited by: 9
Author(s): Tomohide Yamada, Daisuke Yoneoka, Yuta Hiraike, Kimihiro Hino, Hiroyoshi Toyoshiba, Akira Shishido, Hisashi Noma, Nobuhiro Shojima, Toshimasa Yamauchi
Software Mentions: 4
Published: over 5 years ago

10.3390/toxins5112172

Three-Fingered RAVERs: Rapid Accumulation of Variations in Exposed Residues of Snake Venom Toxins
Cited by: 106
Author(s): Kartik Sunagar, Timothy N. W. Jackson, Eivind A. B. Undheim, Syed Abid Ali, Agostinho Antunes, Bryan G. Fry
Software Mentions: 4
Published: over 12 years ago

10.3389/fpls.2020.587185

Comprehensive Identification and Expression Profiling of Circular RNAs During Nodule Development in Phaseolus vulgaris
Cited by: 9
Author(s): Zhihua Wu, Wen Huang, Erdai Qin, Shuo Liu, Huan Liu, Aleel K. Grennan, Hong Liu, Rui Qin
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2019.01098

Identification of Candidate Adaxial–Abaxial-Related Genes Regulating Petal Expansion During Flower Opening in Rosa chinensis “Old Blush”
Cited by: 10
Author(s): Yu Han, Yong Xue, Jiayao Yu, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pcbi.1006453

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression
Cited by: 81
Author(s): Matthew L. Bendall, Miguel de Mulder, Luis P. Íñiguez, Aarón Lecanda, Marcos Pérez‐Losada, Mario Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes‐Terán, Keith A. Crandall, Christopher E. Ormsby, Douglas F. Nixon
Software Mentions: 4
Published: almost 7 years ago