10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.7143

False head complexity and evidence of predator attacks in male and female hairstreak butterflies (Lepidoptera: Theclinae: Eumaeini) from Mexico
Cited by: 6
Author(s): Eric Novelo Galicia, Moisés Armando Luis Martínez, Carlos Cordero
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pntd.0009143

The intersection of land use and human behavior as risk factors for zoonotic pathogen exposure in Laikipia County, Kenya
Cited by: 4
Author(s): Joseph Kamau, Elizabeth Ashby, Lindsey M. Shields, Jennifer H. Yu, Suzan Murray, Megan E. Vodzak, Allan ole Kwallah, Peris Ambala, Dawn Zimmerman
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-016-1191-6

Protein complex prediction for large protein protein interaction networks with the Core&Peel method
Cited by: 35
Author(s): Marco Pellegrini, Miriam Baglioni, Filippo Geraci
Software Mentions: 4
Published: almost 10 years ago

10.3390/genes6010001

Down-Regulation of miR-129-5p and the let-7 Family in Neuroendocrine Tumors and Metastases Leads to Up-Regulation of Their Targets Egr1, G3bp1, Hmga2 and Bach1
Cited by: 53
Author(s): Kristina B. V. Døssing, Tina Binderup, Bogumił Kaczkowski, Anders Jacobsen, Maria Rossing, Ole Winther, Birgitte Federspiel, Ulrich Knigge, Andreas Kjær, Lennart Friis‐Hansen
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pgen.1003075

A Unified Method for Detecting Secondary Trait Associations with Rare Variants: Application to Sequence Data
Cited by: 6
Author(s): Dajiang Liu, Suzanne M. Leal
Software Mentions: 4
Published: over 13 years ago

10.1186/s12944-019-1142-0

LncRNA SNHG8 is identified as a key regulator of acute myocardial infarction by RNA-seq analysis
Cited by: 26
Author(s): Liuan Zhuo, Yi-Tao Wen, Yong Wang, Zhi-Fang Liang, Gang Wu, Nong Mei-dan, Miao Liu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0017476

Functional Structure of Biological Communities Predicts Ecosystem Multifunctionality
Cited by: 341
Author(s): David Mouillot, Sébastien Villéger, Michael Scherer‐Lorenzen, Norman W. H. Mason
Software Mentions: 4
Published: over 15 years ago

10.1186/s13059-020-02215-9

FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
Cited by: 79
Author(s): Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12463

Plasticity in gene transcription explains the differential performance of two invasive fish species
Cited by: 47
Author(s): Kyle Wellband, Daniel D. Heath
Software Mentions: 4
Published: over 9 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2021.676326

Genomic Selection in an Outcrossing Autotetraploid Fruit Crop: Lessons From Blueberry Breeding
Cited by: 18
Author(s): Luís Felipe Ventorim Ferrão, Rodrigo R. Amadeu, Juliana Benevenuto, Ivone de Bem Oliveira, Patricio Muñoz
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.2080

Meta-analysis indicates that oxidative stress is both a constraint on and a cost of growth
Cited by: 84
Author(s): Shona Smith, Ruedi G. Nager, David Costantini
Software Mentions: 4
Published: over 10 years ago

10.3389/fpsyg.2020.579346

Talking to Cows: Reactions to Different Auditory Stimuli During Gentle Human-Animal Interactions
Cited by: 9
Author(s): Annika Lange, Lisa Bauer, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-29992-5

Integrative analysis of the inter-tumoral heterogeneity of triple-negative breast cancer
Cited by: 35
Author(s): Alec Chiu, Mithun Mitra, Lari Boymoushakian, Hilary A. Coller
Software Mentions: 4
Published: about 8 years ago

10.15252/embj.2020105784

ALK ligand ALKAL2 potentiates MYCN‐driven neuroblastoma in the absence of <i>ALK</i> mutation
Cited by: 30
Author(s): Marcus Borenäs, Ganesh Umapathy, Wei-Yun Lai, Dan E. Lind, Barbara Witek, Jikui Guan, Patricia Mendoza-García, Tafheem Masudi, A. Claeys, Tzu-Po Chuang, Abeer El Wakil, Badrul Arefin, Susanne Fransson, Jan Koster, Mathias Johansson, Jennie Gaarder, Jimmy Van den Eynden, Bengt Hållberg, Ruth Palmer
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1006401

Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes
Cited by: 52
Author(s): H. Charlotte van der Does, Like Fokkens, Ally Yang, Sarah M. Schmidt, Léon Langereis, Joanna Lukasiewicz, Timothy R. Hughes, Martijn Rep
Software Mentions: 4
Published: over 9 years ago

10.15252/emmm.201505344

Characterization and quantification of proteins secreted by single human embryos prior to implantation
Cited by: 34
Author(s): Maurizio Poli, Alessandro Ori, Tim Child, S. Jaroudi, K Spath, Martin Beck, Dagan Wells
Software Mentions: 4
Published: almost 11 years ago

10.1002/ece3.6635

Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation
Cited by: 4
Author(s): Laurence Humeau, Matthieu Le Corre, Stuart F. Reynolds, Colin P. Wearn, Janos C. Hennicke, James C. Russell, Yann Gomard, Hélène Magalon, Patrick Pinet, Pauline Gélin, François Xavier Couzi, E. Bemanaja, Vikash Tatayah, Ousseni Bacar, Gérard Rocamora, Patrick Talbot, Nirmal Shah, Leandro Bugoni, Denis Da Silva, A. Jaeger
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0250338

Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site
Cited by: 5
Author(s): Carina Eisfeld, J.M. van der Wolf, Boris M. van Breukelen, Gertjan Medema, J. Velstra, Jack Schijven
Software Mentions: 4
Published: over 5 years ago

10.1016/j.dib.2016.06.005

Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets
Cited by: 5
Author(s): Giovanni Franzo, Martı́ Cortey, Joaquím Segalés, Joseph Hughes, Michele Drigo
Software Mentions: 4
Published: almost 10 years ago

10.1002/cam4.1498

Establishment of a nine‐gene prognostic model for predicting overall survival of patients with endometrial carcinoma
Cited by: 13
Author(s): Jianchao Ying, Qian Wang, Teng Xu, Jianxin Lyu
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0241964

Motivations and fears driving participation in collaborative research infrastructure for animal tracking
Cited by: 2
Author(s): Tara L. Crewe, Dave Kendal, Hamish A. Campbell
Software Mentions: 4
Published: over 5 years ago

10.3390/brainsci11010094

Assessing the Relationship between Verbal and Nonverbal Cognitive Abilities Using Resting-State EEG Functional Connectivity
Cited by: 1
Author(s): Inna Feklicheva, Ilya Zakharov, Nadezda Chipeeva, Ekaterina Maslennikova, Svetlana Korobova, Timofey Adamovich, Victoria Ismatullina, Sergey Malykh
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-016-1053-6

Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms
Cited by: 114
Author(s): Roderick C. Slieker, Maarten van Iterson, René Luijk, Marian Beekman, Daria V. Zhernakova, Matthijs Moed, Hailiang Mei, M.A. van Galen, Patrick Deelen, Marc Jan Bonder, Alexandra Zhernakova, André G. Uitterlinden, Ettje F. Tigchelaar, Coen D. A. Stehouwer, Casper G. Schalkwijk, Carla Kallen, Albert Hofman, Diana van Heemst, Eco J. C. de Geus, Jenny van Dongen, Joris Deelen, Leonard H van den Berg, Joyce B. J. van Meurs, Ritsert C. Jansen, Peter A.C. ’t Hoen, Lude Franke, Cisca Wijmenga, Jan H. Veldink, Morris A. Swertz, Marleen M.J. van Greevenbroek, Cornelia M. van Duijn, Dorret I. Boomsma, P. Eline Slagboom, Bastiaan T. Heijmans
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0249679

Movement intensity demands between training activities and competition for elite female netballers
Cited by: 1
Author(s): Edward R. Brooks, Amanda Benson, Aaron Fox, Lyndell Bruce
Software Mentions: 4
Published: over 5 years ago

10.1186/1475-2859-8-37

Interactive visualization of clusters in microarray data: an efficient tool for improved metabolic analysis of E. coli
Cited by: 7
Author(s): Theresa Scharl, Gerald Striedner, Florentina Pötschacher, Friedrich Leisch, Karl Bayer
Software Mentions: 4
Published: about 17 years ago

10.18632/oncotarget.23280

Validation of a hypoxia related gene signature in multiple soft tissue sarcoma cohorts
Cited by: 32
Author(s): Lingjian Yang, Laura Forker, Joely J. Irlam, Nischalan Pillay, Ananya Choudhury, Catharine M L West
Software Mentions: 4
Published: over 8 years ago

10.3758/s13414-015-1045-8

Matching novel face and voice identity using static and dynamic facial images
Cited by: 41
Author(s): Harriet M. J. Smith, AK Dunn, Thom Baguley, Paula C. Stacey
Software Mentions: 4
Published: over 10 years ago

10.1016/j.jmb.2018.06.007

The FapF Amyloid Secretion Transporter Possesses an Atypical Asymmetric Coiled Coil
Cited by: 10
Author(s): Sarah L. Rouse, Fisentzos Stylianou, Howie Wu, Jamie-Lee Berry, Lee Sewell, Rhodri M. L. Morgan, Andrea C. Sauerwein, Steve Matthews
Software Mentions: 4
Published: almost 8 years ago

10.7554/eLife.27786

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response
Cited by: 29
Author(s): Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pgen.1008518

Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis
Cited by: 10
Author(s): Alfredo Rago, John H. Werren, John K. Colbourne
Software Mentions: 4
Published: over 6 years ago

10.3390/toxins12010004

Alteration of Bumblebee Venom Composition toward Higher Elevation
Cited by: 7
Author(s): Nezahat Pınar Barkan, Mathieu Chevalier, Jean‐Nicolas Pradervand, Antoine Guisan
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-018-2583-6

hoDCA: higher order direct-coupling analysis
Cited by: 4
Author(s): Michael Schmidt, Kay Hamacher
Software Mentions: 4
Published: over 7 years ago

10.1186/s12935-020-01352-2

Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
Cited by: 19
Author(s): Naiqiang Zhu, Jingyi Hou, Guiyun Ma, Shuai Guo, Chengliang Zhao, Bin Chen
Software Mentions: 4
Published: about 6 years ago

10.2188/jea.JE20190141

Associations of Sedentary and Physically-Active Behaviors With Cognitive-Function Decline in Community-Dwelling Older Adults: Compositional Data Analysis From the NEIGE Study
Cited by: 22
Author(s): Shiho Amagasa, Shigeru Inoue, Hiroshi Murayama, Takeo Fujiwara, Hiroyuki Kikuchi, Noritoshi Fukushima, Sébastien Chastin, Neville Owen, Yugo Shobugawa
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1000349

Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin
Cited by: 63
Author(s): Jesse D. Bloom, Matthew Glassman
Software Mentions: 4
Published: over 17 years ago

10.3390/foods10092061

Comparison of Automated Extraction Techniques for Volatile Analysis of Whole Milk Powder
Cited by: 17
Author(s): Ziqiang Cheng, David T. Mannion, Maurice G. O’Sullivan, Song Miao, Joseph P. Kerry, Kieran N. Kilcawley
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-87061-w

Vitamin D and lumisterol derivatives can act on liver X receptors (LXRs)
Cited by: 47
Author(s): Andrzej Słomiński, Tae Kang Kim, Shariq Qayyum, Yuwei Song, Zorica Janjetovic, Allen S.W. Oak, Radomir M. Slominski, Chander Raman, Joanna Stefan, Carlos A. Mier‐Aguilar, Venkatram R. Atigadda, David K. Crossman, Andriy G. Golub, Yaroslav V. Bilokin, Edith K.Y. Tang, Jake Y. Chen, Robert C. Tuckey, Anton M. Jetten
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22115866

LEDGF/p75 Is Required for an Efficient DNA Damage Response
Cited by: 8
Author(s): Victoria Liedtke, Christian Schröder, Dirk Roggenbuck, Romano Weiss, Ralf Stohwasser, Peter Schierack, Stefan Rödiger, Lysann Schenk
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.00858

pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks
Cited by: 189
Author(s): Ege Ülgen, Özan Özışık, Uğur Sezerman
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-021-99127-w

Lung microbiome of stable and exacerbated COPD patients in Tshwane, South Africa
Cited by: 10
Author(s): Tanweer Goolam Mahomed, Rph Peters, Mushal Allam, Arshad Ismail, Senzo Mtshali, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-021-04070-2

Large-scale labeling and assessment of sex bias in publicly available expression data
Cited by: 10
Author(s): Emily Flynn, Annie C. Y. Chang, Russ B. Altman
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-70934-x

Urban food subsidies reduce natural food limitations and reproductive costs for a wetland bird
Cited by: 20
Author(s): Betsy A. Evans, Dale E. Gawlik
Software Mentions: 4
Published: almost 6 years ago

10.1101/2021.08.30.458273

Intravenous administration of BCG protects mice against lethal SARS-CoV-2 challenge
Cited by: 1
Author(s): Kerry L. Hilligan, Sivaranjani Namasivayam, Chad S. Clancy, Sandra D. Oland, Shelly J. Robertson, Paul J. Baker, Ehydel Castro, Nicole L. Garza, Bernard A. P. Lafont, Reed F. Johnson, Franca Ronchese, Katrin D. Mayer‐Barber, Sonja M. Best, Alan Sher
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12860-019-0241-0

Prediction of novel mouse TLR9 agonists using a random forest approach
Cited by: 4
Author(s): Varun Khanna, Lei Li, Johnson Fung, Shoba Ranganathan, Nikolai Petrovsky
Software Mentions: 4
Published: over 6 years ago

10.1186/s12263-018-0594-6

Studying microbial functionality within the gut ecosystem by systems biology
Cited by: 30
Author(s): Bastian Hornung, Vítor A. P. Martins dos Santos, Hauke Smidt, Peter J. Schaap
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-018-0584-3

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Cited by: 59
Author(s): Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0166721

A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing
Cited by: 3
Author(s): Chuan-Kang Ting, Chun-Shin Lin, Ming-Tsai Chan, Jeremy J.W. Chen, Sheng-Yu Chuang, Yao‐Ting Huang
Software Mentions: 4
Published: over 9 years ago

10.1111/eva.12796

Adaptive variation for growth and resistance to a novel pathogen along climatic gradients in a foundation tree
Cited by: 21
Author(s): Collin W. Ahrens, Richard Mazanec, T. Paap, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 4
Published: over 7 years ago

10.15252/emmm.202013131

Synaptic disruption and CREB‐regulated transcription are restored by K ⁺ channel blockers in ALS
Cited by: 19
Author(s): Alberto Catanese, Sandeep Rajkumar, Daniel Sommer, Dennis Freisem, Alexander Wirth, Amr Aly, David Massa-López, Andrea Olivieri, Federica Torelli, Valentin Ioannidis, Joanna Lipecka, Ida Chiara Guerrera, Daniel Zytnicki, Albert C. Ludolph, Edor Kabashi, Medhanie Mulaw, Francesco Roselli, Tobias M. Böckers
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph16234804

Finding Users’ Voice on Social Media: An Investigation of Online Support Groups for Autism-Affected Users on Facebook
Cited by: 33
Author(s): Yuehua Zhao, Jin Zhang, Min Wu
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.13546

Shed urinary ALCAM is an independent prognostic biomarker of three-year overall survival after cystectomy in patients with bladder cancer
Cited by: 16
Author(s): Shanna A Arnold Egloff, Liping Du, Holli A. Loomans, Alina Starchenko, Pei Fang Su, Tatiana Ketova, Paul Knoll, Jifeng Wang, Ahmed Haddad, Oluwole Fadare, Justin M. Cates, Yair Lotan, Yu Shyr, Peter E. Clark, Andries Zijlstra
Software Mentions: 4
Published: over 9 years ago

10.3389/fnhum.2020.00255

Aerobic Exercise Induces Functional and Structural Reorganization of CNS Networks in Multiple Sclerosis: A Randomized Controlled Trial
Cited by: 9
Author(s): Jan‐Patrick Stellmann, Adil Maarouf, Schulz Kh, Lisa Baquet, Jana Pöttgen, Stefan Patra, Iris Katharina Penner, Susanne Gellißen, Gesche Ketels, Pierre Besson, Jean Philippe Ranjeva, Maxime Guye, Guido Nolte, Andreas K. Engel, Bertrand Audoin, Christoph Heesen, Stefan M. Gold
Software Mentions: 4
Published: about 6 years ago

10.1186/s12915-021-00963-z

Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly
Cited by: 64
Author(s): Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A. James, J. J. Emerson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0085867

The Effect of UV-C Pasteurization on Bacteriostatic Properties and Immunological Proteins of Donor Human Milk
Cited by: 76
Author(s): Lukas Christen, Ching Tat Lai, Ben Hartmann, Peter Hartmann, Donna T. Geddes
Software Mentions: 4
Published: over 12 years ago

10.3389/fcell.2021.699212

A Novel Six Metastasis-Related Prognostic Gene Signature for Patients With Osteosarcoma
Cited by: 12
Author(s): Di Zheng, Kezhou Xia, Ling Yu, Changtian Gong, Yubo Shi, Wěi Li, Yonglong Qiu, Jian Yang, Weichun Guo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0070387

Link between Epigenomic Alterations and Genome-Wide Aberrant Transcriptional Response to Allergen in Dendritic Cells Conveying Maternal Asthma Risk
Cited by: 31
Author(s): Lyudmila Mikhaylova, Yiming Zhang, Lester Kobzik, Alexey V. Fedulov
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0244430

PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks
Cited by: 7
Author(s): Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad
Software Mentions: 4
Published: over 5 years ago

10.1186/s12986-020-00505-4

Oatmeal induced gut microbiota alteration and its relationship with improved lipid profiles: a secondary analysis of a randomized clinical trial
Cited by: 9
Author(s): Mengyao Ye, Jianqin Sun, Yanqiu Chen, Qian Ren, Zhen Li, Ying Zhao, Yue Pan, Huijun Xue
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pmed.1002543

Comparative analysis of the association between 35 frailty scores and cardiovascular events, cancer, and total mortality in an elderly general population in England: An observational study
Cited by: 57
Author(s): Gloria Aguayo, Michel Vaillant, Anne Françoise Donneau, Anna Schritz, Saverio Stranges, Laurent Malisoux, Anna Chioti, Michèle Guillaume, Majon Muller, Daniel R. Witte
Software Mentions: 4
Published: over 8 years ago

10.1098/rsos.171551

Correction to ‘Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments’
Cited by: 3
Author(s): Hideyuki Doi, Fumikazu Akamatsu, Andrea F. Gonzalez
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-07975-2

Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: about 9 years ago

10.1002/ece3.7799

Disentangling biotic and abiotic drivers of intraspecific trait variation in woody plant seedlings at forest edges
Cited by: 3
Author(s): Shilu Zheng, Bruce L. Webber, Raphaël K. Didham, Chun Chen, Mingjian Yu
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.01188

Canola Root–Associated Microbiomes in the Canadian Prairies
Cited by: 67
Author(s): Chih Ying Lay, Terrence H. Bell, Chantal Hamel, K. Neil Harker, Ramona M. Mohr, Charles W. Greer, Étienne Yergeau, Marc St‐Arnaud
Software Mentions: 4
Published: about 8 years ago

10.1186/s12864-015-1984-4

Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network
Cited by: 34
Author(s): Maria Pires Pacheco, Elisabeth John, Tony Kaoma, Merja Heinäniemi, Nathalie Nicot, Laurent Vallar, Jean-Luc Bueb, Lasse Sinkkonen, Thomas Sauter
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12911-020-01308-6

Learning to detect the onset of slow activity after a generalized tonic–clonic seizure
Cited by: 2
Author(s): Carroll P. Vance, Yejin Kim, Guoqiang Zhang, Samden D. Lhatoo, Shiqiang Tao, Licong Cui, Xiaojin Li, Xiaoqian Jiang
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.39231

Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera
Cited by: 24
Author(s): Michal Tupec, Aleš Buček, Václav Janous̆ek, Heiko Vogel, Darina Prchalová, Jiří Kindl, Tereza Pavlíčková, Petra Wenzelová, Ullrich Jahn, Irena Valterová, Iva Pichová
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0214965

Differences in Tsimane children’s growth outcomes and associated determinants as estimated by WHO standards vs. within-population references
Cited by: 13
Author(s): Mary C. Martin, Aaron D. Blackwell, Hillard Kaplan, Michael Gurven
Software Mentions: 4
Published: over 7 years ago

10.1038/s41398-019-0472-z

DLPFC transcriptome defines two molecular subtypes of schizophrenia
Cited by: 26
Author(s): Elijah F. W. Bowen, Jack L. Burgess, Richard Granger, Joel E. Kleinman, C. Harker Rhodes
Software Mentions: 4
Published: over 7 years ago

10.1038/onc.2016.242

microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network
Cited by: 16
Author(s): Yan Zhou, Oliver Frings, Rui M. Branca, Jorrit Boekel, Carlos le Sage, Erik Fredlund, Reuven Agami, Lukas M. Orre
Software Mentions: 4
Published: about 10 years ago

10.3389/fcimb.2018.00187

Staphylococcus aureus CC30 Lineage and Absence of sed,j,r-Harboring Plasmid Predict Embolism in Infective Endocarditis
Cited by: 3
Author(s): Jean-Philippe Rasigade, Amélie Leclère, François Alla, Adrien Tessier, Michèle Bes, Catherine Lechiche, Véronique Vernet-Garnier, Cédric Laouénan, François Vandenesch, Catherine Leport
Software Mentions: 4
Published: about 8 years ago

10.1038/s41398-021-01543-z

Network analysis of depressive symptoms in Hong Kong residents during the COVID-19 pandemic
Cited by: 28
Author(s): Teris Cheung, Yu Jin, Simon Ching Lam, Zhaohui Su, Brian J. Hall, Yu‐Tao Xiang, Lorna Kwai Ping Suen, S. M. Chan, H. L. Ho, Hubert Lam, Emma Yun-zhi Huang, Ying Xiao, Fernanda Maria Vieira Pereira-Ávila, Elucir Gir, Menevse Yildirim, Şeyda Seren İntepeler, Tella Lantta, Kyungmi Lee, Nayeon Shin, Ma. Carmen C. Tolabing, Tor Michael Rossing, Ching Yuk Hon, Merissa Tsang, Jessica P. Braz Poeys, Tommy Kwan Hin Fong
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12985-020-01394-y

Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria
Cited by: 21
Author(s): Cody Glickman, Sara M. Kammlade, Nabeeh A. Hasan, L. Elaine Epperson, Rebecca M. Davidson, Michael Strong
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.00340

Clustering of Subgingival Microbiota Reveals Microbial Disease Ecotypes Associated with Clinical Stages of Periodontitis in a Cross-Sectional Study
Cited by: 33
Author(s): Sébastien Boutin, Daniel Hagenfeld, Heiko Zimmermann, Nihad El Sayed, Tanja Höpker, Halina Greiser, Heiko Becher, Ti‐Sun Kim, Alexander H. Dalpke
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0104504

Identification of Significant Features by the Global Mean Rank Test
Cited by: 17
Author(s): Martin Klammer, J. Nikolaj Dybowski, Daniel Hoffmann, Christoph Schaab
Software Mentions: 4
Published: almost 12 years ago

10.1155/2020/2123787

Identification of lncRNA and mRNA Biomarkers in Osteoarthritic Degenerative Meniscus by Weighted Gene Coexpression Network and Competing Endogenous RNA Network Analysis
Cited by: 4
Author(s): Jun Zhao, Yu Su, Jianfei Jiao, Zhengchun Wang, Xiangchun Fang, Xuefeng He, Xiaofeng Zhang, Zhao Liu, Xilin Xu
Software Mentions: 4
Published: about 6 years ago

10.1098/rsos.171359

Heart rate reveals torpor at high body temperatures in lowland tropical free-tailed bats
Cited by: 25
Author(s): M. Teague O’Mara, Sebastian Rikker, Martin Wikelski, A. Ter Maat, Henry S. Pollock, Dina K. N. Dechmann
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0107629

Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Cited by: 4
Author(s): Pui Shan Wong, Michihiro Tanaka, Yoshihiko Sunaga, Masayoshi Tanaka, Tadatsugu Taniguchi, Tomoko Yoshino, Tsuyoshi Tanaka, Wataru Fujibuchi, Sachiyo Aburatani
Software Mentions: 4
Published: almost 12 years ago

10.1186/gb-2010-11-9-r96

Multi-species integrative biclustering
Cited by: 35
Author(s): Peter Waltman, Thadeous J. Kacmarczyk, Ashley R. Bate, Daniel B. Kearns, David J Reiss, Patrick Eichenberger, Richard Bonneau
Software Mentions: 4
Published: over 16 years ago

10.1186/1471-2164-14-728

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivumL.)
Cited by: 80
Author(s): Karl G. Kugler, Gerald Siegwart, Thomas Nußbaumer, Christian Ametz, Manuel Spannagl, Barbara Steiner, Marc Lemmens, Klaus Mayer, Hermann Buerstmayr, Wolfgang Schweiger
Software Mentions: 4
Published: almost 13 years ago

10.1038/s41416-019-0558-7

Evaluating radiological response in pancreatic neuroendocrine tumours treated with sunitinib: comparison of Choi versus RECIST criteria (CRIPNET_ GETNE1504 study)
Cited by: 15
Author(s): María Pilar Solis-Hernández, A. Fernández del Valle, Alberto Carmona-Bayonas, Rocío Garcia-Carbonero, Ana Custodio, Marta Benavent, Teresa Alonso Gordoa, Bárbara Nuñez-Valdovino, Manuel Sánchez Cánovas, Ignacio Matos, Vicente Alonso, Carlos López, A. Viúdez, M. Izquierdo, David Calvo-Temprano, Enrique Grande, Jaume Capdevila, Paula Jiménez‐Fonseca
Software Mentions: 4
Published: almost 7 years ago

10.3389/fnhum.2017.00539

Hyper-Transcranial Alternating Current Stimulation: Experimental Manipulation of Inter-Brain Synchrony
Cited by: 24
Author(s): Caroline Szymanski, Viktor Müller, Timothy R. Brick, Timo von Oertzen, Ulman Lindenberger
Software Mentions: 4
Published: almost 9 years ago

10.3390/v12020248

Substantial Antigenic Drift in the Hemagglutinin Protein of Swine Influenza A Viruses
Cited by: 24
Author(s): Pia Ryt-Hansen, Anders Gorm Pedersen, Inge Larsen, Charlotte Sonne Kristensen, Jesper Schak Krog, Silke Wacheck, Lars Erik Larsen
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2019.00124

Toward a New Approach to Cross-Cultural Distinctiveness and Typicality of Human Faces: The Cross-Group Typicality/ Distinctiveness Metric
Cited by: 12
Author(s): Karel Kleisner, Šimon Pokorný, S. Adil Sarıbay
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.01363

Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function
Cited by: 66
Author(s): Xiao Xie, Chunlei Yang, Le Luo Guan, Jiakun Wang, Mingyuan Xue, Jian X. Liu
Software Mentions: 4
Published: about 8 years ago

10.1186/s13071-021-04827-x

Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus
Cited by: 7
Author(s): Sarah S. Wheeler, Conor C. Taff, William K. Reisen, Andrea K. Townsend
Software Mentions: 4
Published: about 5 years ago

10.1093/ve/vey027

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains
Cited by: 24
Author(s): James R. Otieno, Everlyn Kamau, John W Oketch, Joyce M. Ngoi, Alex Gichuki, Špela Binter, Grieven P. Otieno, Mwanajuma Ngama, Charles N. Agoti, Patricia A. Cane, Paul Kellam, Matthew Cotten, Philippe Lemey, D. James Nokes
Software Mentions: 4
Published: about 8 years ago

10.1186/s13059-016-0911-6

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways
Cited by: 15
Author(s): Tarmo Äijö, Yun Huang, Henrik Mannerström, Lukas Chávez, Ageliki Tsagaratou, Anjana Rao, Harri Lähdesmäki
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms19041140

Aging and Intermittent Fasting Impact on Transcriptional Regulation and Physiological Responses of Adult Drosophila Neuronal and Muscle Tissues
Cited by: 14
Author(s): Sharon Zhang, Eric P. Ratliff, Brandon Molina, Nadja El-Mecharrafie, Jessica Mastroianni, Roxanne W. Kotzebue, Madhulika Achal, Ruth E. Mauntz, Arysa Gonzalez, Ayeh Barekat, William A. Bray, Andrew M Macias, Daniel J. Daugherty, Greg L. Harris, Robert A. Edwards, Kim D. Finley
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2164-14-586

The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions
Cited by: 46
Author(s): Brian R. Johnson, Joel Atallah, David C. Plachetzki
Software Mentions: 4
Published: over 13 years ago

10.1007/s00330-020-07624-9

A PET/CT nomogram incorporating SUVmax and CT radiomics for preoperative nodal staging in non-small cell lung cancer
Cited by: 20
Author(s): Yunming Xie, Hongguang Zhao, Yan Guo, Fanyang Meng, Xiangchun Liu, Yiying Zhang, Xiaochen Huai, Qianting Wong, Yu Fu, Huimao Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.599834

An Integrated Transcriptome Analysis Reveals IGFBP7 Upregulation in Vasculature in Traumatic Brain Injury
Cited by: 3
Author(s): Jianhao Wang, Xiangyi Deng, Yuan Xie, Jiefu Tang, Ziwei Zhou, Fan Yang, Qiyuan He, Qingze Cao, Lei Zhang, Liqun He
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-019-3656-8

Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data
Cited by: 21
Author(s): Morgan P. Kain, Benjamin M. Bolker
Software Mentions: 4
Published: about 7 years ago

10.1007/s00259-020-04814-x

Individual brain metabolic connectome indicator based on Kullback-Leibler Divergence Similarity Estimation predicts progression from mild cognitive impairment to Alzheimer’s dementia
Cited by: 45
Author(s): Min Wang, Jiehui Jiang, Zhuangzhi Yan, Ian Alberts, Jingjie Ge, Huiwei Zhang, Chuantao Zuo, Jin‐Tai Yu, Axel Rominger, Kuangyu Shi, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-019-1785-1

Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
Cited by: 21
Author(s): Matthew J. Ellington, Eva Heinz, Alexander M. Wailan, Matthew J. Dorman, Marcus C. de Goffau, Amy K. Cain, Sonal P. Henson, Nicholas Gleadall, Christine J. Boinett, Gordon Dougan, Nicholas M. Brown, Neil Woodford, Julian Parkhill, M. Estée Török, Sharon J. Peacock, Nicholas R. Thomson
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.16764

Norrin/Frizzled4 signalling in the preneoplastic niche blocks medulloblastoma initiation
Cited by: 20
Author(s): Erin A. Bassett, Nicholas Tokarew, Ema A Allemano, Chantal Mazerolle, Katy Morin, Alan J. Mears, Brian McNeill, Randy Ringuette, Charles Macfie Campbell, Sheila Smiley, Nenad T. Pokrajac, Adrian M. Dubuc, Vijay Ramaswamy, Paul A. Northcott, Marc Remke, Philippe P. Monnier, David Potter, Kim Paes, Laura L. Kirkpatrick, Kenneth J. Coker, Dennis S. Rice, Carolina Perez‐Iratxeta, Michael D. Taylor, Valerie A. Wallace
Software Mentions: 4
Published: almost 10 years ago

10.3389/fmicb.2018.02060

Local Functioning, Landscape Structuring: Drivers of Soil Microbial Community Structure and Function in Peatlands
Cited by: 6
Author(s): Sven Teurlincx, Amber Heijboer, Annelies J. Veraart, George A. Kowalchuk, Steven Declerck
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpsyg.2020.00149

Analyzing the Fit of IRT Models With the Hausman Test
Cited by: 5
Author(s): Jochen Ranger, Sören Much
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21186762

Changes in Nuclear Shape and Gene Expression in Response to Simulated Microgravity Are LINC Complex-Dependent
Cited by: 13
Author(s): Srujana Neelam, Brian Richardson, Richard Barker, Ceasar Udave, Simon Gilroy, Mark J. Cameron, Howard G. Levine, Ye Zhang
Software Mentions: 4
Published: almost 6 years ago