10.1371/journal.pone.0170293

Recent Themes in Social Networking Service Research
Cited by: 20
Author(s): John S. Liu, Mei Hsiu–Ching Ho, Louis Y. Y. Lu
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2164-15-1039

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Cited by: 200
Author(s): Jeffrey E. Barrick, Geoffrey Colburn, Daniel E. Deatherage, Charles C. Traverse, Matthew D Strand, Jordan J Borges, David B. Knoester, Aaron Reba, Austin G. Meyer
Software Mentions: 4
Published: over 12 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 5 years ago

10.1242/bio.039461

Acclimation temperature changes spermatozoa flagella length relative to head size in brown trout
Cited by: 2
Author(s): Miriam Fenkes, John L. Fitzpatrick, Holly A. Shiels, Robert L. Nudds
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2015.00891

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland
Cited by: 85
Author(s): Rebecca C. Mueller, Jayne Belnap, Cheryl R. Kuske
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12889-019-7384-y

Global comparison of cancer outcomes: standardization and correlation with healthcare expenditures
Cited by: 10
Author(s): Hyun‐Seok Choi, Ka-On Lam, Herbert Pang, Steven K. C. Tsang, Roger K.C. Ngan, Anne W.M. Lee
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2017.01979

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy
Cited by: 177
Author(s): Carlotta De Filippo, Monica Di Paola, Matteo Ramazzotti, Davide Albanese, Giuseppe Pieraccini, Elena Banci, Franco Miglietta, Duccio Cavalieri, Paolo Lionetti
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0118231

Sugarcane Giant Borer Transcriptome Analysis and Identification of Genes Related to Digestion
Cited by: 12
Author(s): Fernando Campos de Assis Fonseca, Alexandre Augusto Pereira Firmino, Leonardo Lima Pepino Macedo, Roberta Ramos Coelho, José Dijair Antonino de Sousa Júnior, Orzenil B. Silva‐Junior, Roberto Coiti Togawa, George J. Pappas, Luiz Avelar Brandão de Góis, Maria Cristina Mattar da Silva, Maria Fátima Grossi-de-Sá
Software Mentions: 4
Published: over 11 years ago

10.1007/s00330-017-5031-5

Optimising preoperative risk stratification tools for prostate cancer using mpMRI
Cited by: 17
Author(s): Lars Anders Rokne Reisæter, Jurgen J. Fütterer, Are Losnegård, Yngve Nygård, Jan Ankar Monssen, Karsten Gravdal, Ole J. Halvorsen, Lars A. Akslen, Martin Biermann, Svein A. Haukaas, Jarle Rørvik, Christian Beisland
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-020-74753-y

Alcohol use in severely injured trauma patients
Cited by: 20
Author(s): Antti Riuttanen, Saara Jäntti, Ville M. Mattila
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12876-020-01512-8

Changes in plasma bile acids are associated with gallbladder stones and polyps
Cited by: 11
Author(s): Linshi Wu, Wang Yin-ping, Sibo Zhu, Xiao Bao, Fu Zhuo, Timing Zhen, Zhiqing Yuan, Qiwei Li, Zheng Deng, J. Z. Sun, Tao Chen
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-85909-9

Elucidation of Japanese pepper (Zanthoxylum piperitum De Candolle) domestication using RAD-Seq
Cited by: 7
Author(s): Maddumage Dona Ginushika Priyadarshani Premarathne, Nami Fukutome, Kazuaki Yamasaki, Fumiyo Hayakawa, Atsushi J. Nagano, Hisataka Mizuno, Nobuo Ibaragi, Yukio Nagano
Software Mentions: 4
Published: over 5 years ago

10.1007/s00120-021-01476-x

Formen der Evidenzsynthese
Cited by: 0
Author(s): Sebastian Gräf, Jennifer Kranz, Stefanie Schmidt, Laura Bellut, Annemarie Uhlig
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2288-13-62

Predicting hemoglobin levels in whole blood donors using transition models and mixed effects models
Cited by: 14
Author(s): Kazem Nasserinejad, Wim de Kort, M. L. Baart, Arnošt Komárek, Joost van Rosmalen, Emmanuel Lesaffre
Software Mentions: 4
Published: over 13 years ago

10.3389/fmicb.2012.00252

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Cited by: 86
Author(s): Steven J. Biller, Annika C. Mosier, George F. Wells, Christopher A. Francis
Software Mentions: 4
Published: over 14 years ago

10.3390/ani10050845

Social Media Contexts Moderate Perceptions of Animals
Cited by: 11
Author(s): Elizabeth Riddle, Jill R D MacKay
Software Mentions: 4
Published: about 6 years ago

10.1007/s00213-017-4790-7

Effects of caffeine on reaction time are mediated by attentional rather than motor processes
Cited by: 12
Author(s): Christopher W. N. Saville, Helma M. de Morree, Neil M. Dundon, Samuele Maria Marcora, Christoph Klein
Software Mentions: 4
Published: over 8 years ago

10.1002/1878-0261.12503

HDAC7‐mediated control of tumour microenvironment maintains proliferative and stemness competence of human mammary epithelial cells
Cited by: 27
Author(s): Valentina Cutano, Eros Di Giorgio, Martina Minisini, Raffaella Picco, Emiliano Dalla, Claudio Brancolini
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-018-2283-2

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics
Cited by: 38
Author(s): Stephen D Shank, Steven Weaver, Sergei L. Kosakovsky Pond
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0233889

Protected and un-protected urban wetlands have similar aquatic macroinvertebrate communities: A case study from the Cape Flats Sand Fynbos region of southern Africa
Cited by: 5
Author(s): Michelle Blanckenberg, Musa C. Mlambo, D. Stott Parker, Samuel N. Motitsoe, Cecile Reed
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/3766659

Multiomics Differences in Lung Squamous Cell Carcinoma Patients with High Radiosensitivity Index Compared with Those with Low Radiosensitivity Index
Cited by: 2
Author(s): You Wei Du, Shengtao Yuan, Xibing Zhuang, Qi Zhang, Tiankui Qiao
Software Mentions: 4
Published: almost 5 years ago

10.3390/nu10050558

Assessment of Lactose-Free Diet on the Phalangeal Bone Mineral Status in Italian Adolescents Affected by Adult-Type Hypolactasia
Cited by: 10
Author(s): Alessandro Baldan, Sylvie Tagliati, D Saccomandi, Andrea Brusaferro, Laura Busoli, Andrea Scala, Cristina Malaventura, Giuseppe Maggiore, Caterina Borgna‐Pignatti
Software Mentions: 4
Published: over 8 years ago

10.1111/hex.12545

Closing the patient experience chasm: A two-level validation of the Consumer Quality Index Inpatient Hospital Care
Cited by: 9
Author(s): Alina Smirnova, Kiki M. J. M. H. Lombarts, Onyebuchi A. Arah, Cees van der Vleuten
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pcbi.1007982

It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology
Cited by: 17
Author(s): Niklas Korsbo, Henrik Jönsson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0127292

Age Specific Survival Rates of Steller Sea Lions at Rookeries with Divergent Population Trends in the Russian Far East
Cited by: 17
Author(s): Alexey Altukhov, Russel D. Andrews, Donald G. Calkins, Thomas S. Gelatt, Eliezer Gurarie, Thomas R. Loughlin, Evgeny Mamaev, В. С. Никулин, Peter A. Permyakov, Sergey D. Ryazanov, Vladimir V. Vertyankin, Vladimir N. Burkanov
Software Mentions: 4
Published: about 11 years ago

10.1186/s12864-021-07881-y

Comprehensive analysis of lncRNAs involved in skeletal muscle development in ZBED6-knockout Bama pigs
Cited by: 5
Author(s): Dandan Wang, Pu Yun, Yefang Li, Dengke Pan, Shengnan Wang, Wenjie Tian, Yuehui Ma, Lin Jiang
Software Mentions: 4
Published: about 5 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: almost 6 years ago

10.1093/conphys/coaa045

Physiological mechanisms linking cold acclimation and the poleward distribution limit of a range-extending marine fish
Cited by: 9
Author(s): Barrett W. Wolfe, Quinn P. Fitzgibbon, Jayson M. Semmens, S Tracey, Gretta T. Pecl
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-12-58

Taxon ordering in phylogenetic trees: a workbench test
Cited by: 4
Author(s): Francesco Cerutti, Luigi Bertolotti, Tony L. Goldberg, Mario Giacobini
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pntd.0007766

Enduring extreme climate: Effects of severe drought on Triatoma brasiliensis populations in wild and man-made habitats of the Caatinga
Cited by: 6
Author(s): Antonia C. Ribeiro, Otília Sarquis, Marli Maria Lima, Fernando Abad‐Franch
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pntd.0008881

Status and forecast of leprosy in the still endemic province of Formosa in northern Argentina
Cited by: 2
Author(s): María Rosa Arnaiz, Hernán A. Iuri, José I. Franco, Lucila Arzamendia, María Soledad Santini, Hugo C. Recalde
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0130741

Characterisation of Brachycephalic Obstructive Airway Syndrome in French Bulldogs Using Whole-Body Barometric Plethysmography
Cited by: 61
Author(s): Nai‐Chieh Liu, David R. Sargan, Vicki Adams, Jane Ladlow
Software Mentions: 4
Published: about 11 years ago

10.2196/18714

Type 1 Diabetes Mellitus Virtual Patient Network as a Peer Support Community: Protocol for Social Network Analysis and Content Analysis
Cited by: 8
Author(s): Nancy Wu, Anne‐Sophie Brazeau, Meranda Nakhla, Deborah Chan, Deborah Da Costa, Geetha Mukerji, Sonia Butalia, Danièle Pacaud, Mélanie Henderson, Constadina Panagiotopoulos, Elham Rahme, Kaberi Dasgupta
Software Mentions: 4
Published: almost 6 years ago

10.3390/antibiotics6040038

Decreasing Inappropriate Use of Antibiotics in Primary Care in Four Countries in South America—Cluster Randomized Controlled Trial
Cited by: 8
Author(s): Inés Urbiztondo, Lars Bjerrum, Lidia Caballero, Marı́a Dolores Suárez, Monica Olinisky, Gloria Córdoba
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-86720-2

Climate change and anthropogenic food manipulation interact in shifting the distribution of a large herbivore at its altitudinal range limit
Cited by: 8
Author(s): Julius G. Bright Ross, Wibke Peters, Federico Ossi, P. R. Moorcroft, E. Cordano, E. Eccel, Filippo Bianchini, Maurizio Ramanzin, Francesca Cagnacci
Software Mentions: 4
Published: over 5 years ago

10.1186/s13568-017-0491-1

Responses of zinc recovery to temperature and mineral composition during sphalerite bioleaching process
Cited by: 9
Author(s): Yunhua Xiao, Xueduan Liu, Jun Fang, Yili Liang, Xian Zhang, Delong Meng, Huaqun Yin
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0216178

Flux prediction using artificial neural network (ANN) for the upper part of glycolysis
Cited by: 14
Author(s): Anamya Ajjolli Nagaraja, Nicolas Fontaine, Mathieu Delsaut, Philippe Charton, Cédric Damour, Bernard Offmann, Brigitte Grondin-Pérez, Frédéric Cadet
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-31072-7

Transcriptional shifts account for divergent resource allocation in feed efficient broiler chickens
Cited by: 12
Author(s): Henry Reyer, Barbara U. Metzler‐Zebeli, Nares Trakooljul, Michael Oster, Eduard Muráni, Siriluck Ponsuksili, Frieder Hadlich, Klaus Wimmers
Software Mentions: 4
Published: almost 8 years ago

10.1093/aobpla/plaa006

Plasticity to drought and ecotypic differentiation in populations of a crop wild relative
Cited by: 20
Author(s): Silvia Matesanz, Marina Ramos‐Muñoz, Belén Moncalvillo, María Luisa Rubio Teso, S L García de Dionisio, José Antonio Vinagre Romero, J. M. Iriondo
Software Mentions: 4
Published: over 6 years ago

10.1186/gb-2013-14-11-r125

Transcriptomic classification of genetically engineered mouse models of breast cancer identifies human subtype counterparts
Cited by: 176
Author(s): Adam D. Pfefferle, Jason I. Herschkowitz, Jerry Usary, J. Chuck Harrell, Benjamin T. Spike, Jessica R. Adams, Maria I. Torres-Arzayus, Myles Brown, Sean E. Egan, Geoffrey M. Wahl, Jeffrey M. Rosen, Charles M. Perou
Software Mentions: 4
Published: over 13 years ago

10.1038/s42003-021-02244-5

Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology
Cited by: 19
Author(s): Ian M. Ware, Michael E. Van Nuland, Zamin K. Yang, Christopher W. Schadt, Jennifer A. Schweitzer, Joseph K. Bailey
Software Mentions: 4
Published: about 5 years ago

10.1186/s13024-018-0254-8

Identification and therapeutic modulation of a pro-inflammatory subset of disease-associated-microglia in Alzheimer’s disease
Cited by: 227
Author(s): Srikant Rangaraju, Eric B. Dammer, Syed Ali Raza, Priyadharshini Rathakrishnan, Hailian Xiao, Tianwen Gao, Duc M. Duong, Michael W. Pennington, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 4
Published: about 8 years ago

10.1177/2041669518761464

Implicit and Explicit Evaluation of Visual Symmetry as a Function of Art Expertise
Cited by: 26
Author(s): Hanna Weichselbaum, Helmut Leder, Ulrich Ansorge
Software Mentions: 4
Published: over 8 years ago

10.1099/acmi.0.000015

Phylogenomics insights into order and families of Lysobacterales
Cited by: 19
Author(s): Sanjeet Kumar, Kanika Bansal, Prashant P. Patil, Prabhu B. Patil
Software Mentions: 4
Published: over 7 years ago

10.1186/1752-0509-5-127

Exploring pathway interactions in insulin resistant mouse liver
Cited by: 16
Author(s): Thomas Kelder, Lars Eijssen, Robert Kleemann, Marjan van Erk, Teake Kooistra, Chris T. Evelo
Software Mentions: 4
Published: over 15 years ago

10.1186/s40246-020-00270-8

A potential prognostic prediction model of colon adenocarcinoma with recurrence based on prognostic lncRNA signatures
Cited by: 14
Author(s): Lipeng Jin, Chenyao Li, Tao Liu, Lei Wang
Software Mentions: 4
Published: about 6 years ago

10.1093/conphys/coz073

Thermal physiology and activity in relation to reproductive status and sex in a free-ranging semelparous marsupial
Cited by: 6
Author(s): Cassandra A. Parker, Fritz Geiser, Clare Stawski
Software Mentions: 4
Published: over 7 years ago

10.1098/rsos.171178

Defining the risk landscape in the context of pathogen pollution: <i>Toxoplasma gondii</i> in sea otters along the Pacific Rim
Cited by: 19
Author(s): Tristan L. Burgess, M. Tim Tinker, Melissa A. Miller, James L. Bodkin, Michael J. Murray, Justin A. Saarinen, Linda M. Nichol, Shawn Larson, Patricia A. Conrad, Christine K. Johnson
Software Mentions: 4
Published: about 8 years ago

10.1093/molbev/msw004

Environmental Correlation Analysis for Genes Associated with Protection against Malaria
Cited by: 20
Author(s): Margaret J. Mackinnon, Carolyne Ndila, Sophie Uyoga, Alex Macharia, Robert W. Snow, Gavin Band, Anna Rautanen, Kirk A. Rockett, Dominic P. Kwiatkowski, Thomas N. Williams
Software Mentions: 4
Published: over 10 years ago

10.3389/fpsyg.2019.02081

Training Participants to Focus on Critical Facial Features Does Not Decrease Own-Group Bias
Cited by: 6
Author(s): Tania Wittwer, Colin Tredoux, Jacques Py, Pierre‐Vincent Paubel
Software Mentions: 4
Published: almost 7 years ago

10.3389/fimmu.2019.01063

α7 Nicotinic Acetylcholine Receptor Signaling Modulates Ovine Fetal Brain Astrocytes Transcriptome in Response to Endotoxin
Cited by: 16
Author(s): Mingju Cao, James W. MacDonald, Hai L. Liu, Molly Weaver, Marina Farrel Cortês, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Jay Schulkin, Marta C. Antonelli, Raphael Bernier, Michael O. Dorschner, Theo K. Bammler, Martin G. Frasch
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0209524

Italian norms and naming latencies for 357 high quality color images
Cited by: 10
Author(s): Eduardo Navarrete, Giorgio Arcara, Sara Mondini, Barbara Penolazzi
Software Mentions: 4
Published: over 7 years ago

10.1038/srep43149

The hidden perils of read mapping as a quality assessment tool in genome sequencing
Cited by: 4
Author(s): Burhan Lehri, Alan M. Seddon, Andrey V. Karlyshev
Software Mentions: 4
Published: over 9 years ago

10.1186/s40104-016-0089-5

Selection signatures in Canchim beef cattle
Cited by: 23
Author(s): Ismael Urbinati, Nedenia Bonvino Stafuzza, Marcos T. Oliveira, T.C.S. Chud, R. H. Higa, Luciana Correia de Almeida Regitano, M. M. de Alencar, Marcos Eli Buzanskas, Danísio Prado Munari
Software Mentions: 4
Published: over 10 years ago

10.1186/s12885-015-1179-z

Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma
Cited by: 57
Author(s): Yibin Hao, Wei Wu, Fachun Shi, Rodrigo Juliani Siqueira Dalmolin, Ming Yan, Fei Tian, Xiaobing Chen, Guoyong Chen, Wei Cao
Software Mentions: 4
Published: over 11 years ago

10.1128/mBio.02863-20

Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis
Cited by: 10
Author(s): Marija Dmitrijeva, Christian Kahlert, Rounak Feigelman, Rebekka Kleiner, Oliver Nolte, Werner C. Albrich, Florent Baty, Christian von Mering
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.02043

Protists Within Corals: The Hidden Diversity
Cited by: 23
Author(s): Camille Clérissi, Sébastien Brunet, Jérémie Vidal-Dupiol, Mehdi Adjeroud, Pierre Lepage, Laure Guillou, Jean-Michel Escoubas, Ève Toulza
Software Mentions: 4
Published: almost 8 years ago

10.3390/cells10071821

Plasma Metabolome Profiling Identifies Metabolic Subtypes of Pancreatic Ductal Adenocarcinoma
Cited by: 8
Author(s): Ujjwal Mukund Mahajan, Ahmed Alnatsha, Qi Li, Bettina Oehrle, Florian Weiß, Matthias Sendler, Marius Distler, Waldemar Uhl, Tim Fahlbusch, Elisabetta Goni, Georg Beyer, Ansgar M. Chromik, M. Bahra, Fritz Klein, Christian Pilarsky, Robert Grützmann, Markus M. Lerch, Kirsten Lauber, Nicole Christiansen, Beate Kamlage, Ivonne Regel, Julia Mayerle
Software Mentions: 4
Published: about 5 years ago

10.1186/s13054-021-03469-w

High-flow nasal oxygen in patients with COVID-19-associated acute respiratory failure
Cited by: 125
Author(s): Ricard Mellado Artigas, Bruno L. Ferreyro, Federico Angriman, María L. Hernández-Sanz, Egoitz Arruti, Antoni Torres, Jesús Villar, Laurent Brochard, Carlos Ferrando
Software Mentions: 4
Published: over 5 years ago

10.1016/j.stem.2020.07.019

Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
Cited by: 36
Author(s): Daniel Ortmann, Stephanie Brown, Anne Czechanski, Selcan Aydin, Daniele Muraro, Yuanhua Huang, Rute Tomaz, Anna Osnato, Giovanni Canu, Brandon T Wesley, Daniel A. Skelly, Oliver Stegle, Tae-Young Choi, Gary A. Churchill, Christopher L. Baker, Peter J. Rugg‐Gunn, Steven C. Munger, Laura G. Reinholdt, Ludovic Vallier
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.00457

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts
Cited by: 19
Author(s): Irene Stefanini, Silvia Carlin, Noemi Tocci, Davide Albanese, Claudio Donati, Pietro Franceschi, Michele Paris, Alberto Zenato, Silvano Tempesta, Alberto Bronzato, Urška Vrhovšek, Fulvio Mattivi, Duccio Cavalieri
Software Mentions: 4
Published: over 9 years ago

10.1177/2472555220949495

Changing the HTS Paradigm: AI-Driven Iterative Screening for Hit Finding
Cited by: 14
Author(s): Gabriel H S Dreiman, Magda Bictash, Paul V. Fish, Lewis D. Griffin, Fredrik Svensson
Software Mentions: 4
Published: over 5 years ago

10.1172/jci.insight.144575

Hedgehog interacting protein–expressing lung fibroblasts suppress lymphocytic inflammation in mice
Cited by: 5
Author(s): Jeong H. Yun, ChangHee Lee, Tao Liu, Siqi Liu, Edy Y. Kim, Shuang Xu, Jeffrey L. Curtis, Luca Pinello, Russell P. Bowler, Edwin K. Silverman, Craig P. Hersh, Xiaobo Zhou
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0088669

Generalization of Clustering Coefficients to Signed Correlation Networks
Cited by: 46
Author(s): Giulio Costantini, Marco Perugini
Software Mentions: 4
Published: over 12 years ago

10.3389/fphys.2016.00606

Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine
Cited by: 30
Author(s): Alejandra Contreras, Benjamin Cocom-Chan, Georgina Hernández-Montes, Tobías Portillo-Bobadilla, Osbaldo Resendis‐Antonio
Software Mentions: 4
Published: over 9 years ago

10.1001/jamanetworkopen.2021.11329

Real-World Survival Outcomes Associated With First-Line Immunotherapy, Targeted Therapy, and Combination Therapy for Metastatic Clear Cell Renal Cell Carcinoma
Cited by: 15
Author(s): Nicholas H. Chakiryan, Da David Jiang, Kyle Gillis, Elizabeth Green, Ali Hajiran, Lee A. Hugar, Logan Zemp, Jingsong Zhang, Rohit Jain, Jad Chahoud, Philippe E. Spiess, Wade J. Sexton, Scott M. Gilbert, Brandon Manley
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-74064-2

Sea ice variability and maritime activity around Svalbard in the period 2012–2019
Cited by: 25
Author(s): Alexandra Stocker, Angelika Renner, Maaike Knol-Kauffman
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12918-019-0694-y

GNE: a deep learning framework for gene network inference by aggregating biological information
Cited by: 29
Author(s): Kishan Kc, Rui Li, Feng Cui, Qi Yu, Anne R. Haake
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-015-1635-9

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
Cited by: 72
Author(s): James E. Koltes, Eric R. Fritz-Waters, Christopher J. Eisley, Igseo Choi, Hua Bao, Arun Kommadath, Nick V. L. Serão, Nicholas Boddicker, Samuel M. Abrams, Martine Schroyen, Hyelee Loyd, Christopher K. Tuggle, Graham Plastow, Leluo Guan, Paul Stothard, Joan K. Lunney, Peng Liu, Susan Carpenter, Raymond R. R. Rowland, Jack C. M. Dekkers, James M. Reecy
Software Mentions: 4
Published: about 11 years ago

10.1126/sciadv.abe8215

Dynamics of sex chromosome evolution in a rapid radiation of cichlid fishes
Cited by: 28
Author(s): Athimed El Taher, Fabrizia Ronco, Michael Matschiner, Walter Salzburger, Astrid Böhne
Software Mentions: 4
Published: almost 5 years ago

10.1080/19490976.2021.1897209

The high prevalence of <i>Clostridioides difficile</i> among nursing home elders associates with a dysbiotic microbiome
Cited by: 6
Author(s): John P. Haran, Doyle V. Ward, Shakti Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Software Mentions: 4
Published: over 5 years ago

10.1093/aobpla/plab011

Presence of a dominant native shrub is associated with minor shifts in the function and composition of grassland communities in a northern savannah
Cited by: 0
Author(s): Isaac Peetoom Heida, Charlotte Brown, Margarete A Dettlaff, Kenneth Oppon, James Cahill
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2148-14-139

Molecular evolution of NASP and conserved histone H3/H4 transport pathway
Cited by: 30
Author(s): Syed Nabeel‐Shah, Kanwal Ashraf, Ronald E. Pearlman, Jeffrey Fillingham
Software Mentions: 4
Published: about 12 years ago

10.1038/s41419-021-03832-3

Comparison of the major cell populations among osteoarthritis, Kashin–Beck disease and healthy chondrocytes by single-cell RNA-seq analysis
Cited by: 35
Author(s): Wang Xi, Yujie Ning, Pan Zhang, Blandine Poulet, Ruitian Huang, Yi Gong, Minhan Hu, Cheng Li, Rong Zhou, Mikko J. Lammi, Xiong Guo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0204195

Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae
Cited by: 37
Author(s): Lionel Lebreton, Anne‐Yvonne Guillerm‐Erckelboudt, Kévin Gazengel, Juliette Linglin, Morgane Ourry, Pascal Glory, Alain Sarniguet, Stéphanie Daval, Maria Manzanares-Dauleux, Christophe Mougel
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0076746

Meta-Analysis Identifies NF-κB as a Therapeutic Target in Renal Cancer
Cited by: 37
Author(s): Suraj Peri, Karthik Devarajan, Dong‐Hua Yang, Alfred G. Knudson, Siddharth Balachandran
Software Mentions: 4
Published: almost 13 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12920-017-0250-9

Basal-like breast cancer: molecular profiles, clinical features and survival outcomes
Cited by: 64
Author(s): Heloisa Helena Milioli, Inna Tishchenko, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-017-1762-1

Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV
Cited by: 3
Author(s): Katrin Hainke, Sebastian Szugat, Roland Fried, Jörg Rahnenführer
Software Mentions: 4
Published: about 9 years ago

10.1192/bjo.2020.93

Interpersonal theory of suicide: prospective examination
Cited by: 17
Author(s): Thomas Forkmann, Heide Glaesmer, Laura Paashaus, Dajana Rath, Antje Schönfelder, Katharina Stengler, Georg Juckel, Hans‐Jörg Assion, Tobias Teismann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0095875

The DNA Methylome and Transcriptome of Different Brain Regions in Schizophrenia and Bipolar Disorder
Cited by: 70
Author(s): Yun Xiao, Cynthia Camarillo, Yanyan Ping, Tania Bedard Arana, Hongying Zhao, Peter M. Thompson, Chaohan Xu, Bai-Horng Su, Huihui Fan, Javier Ordoñez, Li Wang, Chunxiang Mao, Yunpeng Zhang, Dianne A. Cruz, Michael Escamilla, Xia Li, Xu Chun
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pgen.1009302

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
Cited by: 24
Author(s): Natalie Saini, Camille K. Giacobone, Leszek J. Klimczak, Brian N. Papas, Adam Burkholder, Jianliang Li, David C. Fargo, Re Bai, Kevin Gerrish, Cynthia L. Innes, Shepherd H. Schurman, Dmitry A. Gordenin
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-014-0081-7

Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach
Cited by: 31
Author(s): Huy Gia Vuong, Feixiong Cheng, Lin Chen, Zhongming Zhao
Software Mentions: 4
Published: almost 12 years ago

10.7717/peerj.2056

SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals
Cited by: 9
Author(s): Yevgeny Nikolaichik, Aliaksandr U. Damienikan
Software Mentions: 4
Published: about 10 years ago

10.1172/jci.insight.150203

Genomic and epigenomic evolution of acquired resistance to combination therapy in esophageal squamous cell carcinoma
Cited by: 6
Author(s): Qingjie Min, Yan Wang, Qingnan Wu, Xianfeng Li, Huajing Teng, Jingyuan Fan, Yiren Cao, Pingsheng Fan, Qimin Zhan
Software Mentions: 4
Published: almost 5 years ago

10.1017/cts.2020.513

Lessons and tips for designing a machine learning study using EHR data
Cited by: 14
Author(s): Jaron Arbet, Cole Brokamp, Jareen Meinzen‐Derr, Katy E. Trinkley, Heidi Spratt
Software Mentions: 4
Published: about 6 years ago

10.1093/bioinformatics/bty476

Meffil: efficient normalization and analysis of very large DNA methylation datasets
Cited by: 173
Author(s): Josine L. Min, Gibran Hemani, George Davey Smith, Caroline L Relton, Matthew Suderman
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0022022

Origin and Evolution of TRIM Proteins: New Insights from the Complete TRIM Repertoire of Zebrafish and Pufferfish
Cited by: 94
Author(s): Pierre Boudinot, Lieke M. van der Aa, Luc Jouneau, Louis Du Pasquier, Pierre Pontarotti, Valérie Briolat, Abdenour Benmansour, Jean‐Pierre Levraud
Software Mentions: 4
Published: about 15 years ago

10.1186/s13054-017-1729-7

Protein S100 as outcome predictor after out-of-hospital cardiac arrest and targeted temperature management at 33 °C and 36 °C
Cited by: 61
Author(s): Pascal Stammet, Josef Dankiewicz, Niklas Nielsen, François Faÿs, Olivier Collignon, Christian Hassager, Michael Wanscher, Johan Undén, Jørn Wetterslev, Tommaso Pellis, Anders Åneman, Jan Hovdenes, Matt P. Wise, Georges Gilson, David Erlinge, Janneke Horn, Tobias Cronberg, Michael Kuiper, Jesper Kjærgaard, Yvan Gasche, Yvan Devaux, Hans Friberg
Software Mentions: 4
Published: about 9 years ago

10.5334/joc.188

Investigating Reading Comprehension in Adolescents with Intellectual Disabilities: Evaluating the Simple View of Reading
Cited by: 3
Author(s): Karin Nilsson, Henrik Danielsson, Åsa Elwér, David Messer, Lucy A. Henry, Stefan Samuelsson
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2016.02067

Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce
Cited by: 72
Author(s): Heiko Nacke, Kezia Goldmann, Ingo Schöning, Birgit Pfeiffer, Kristin Kaiser, Genis Castillo-Villamizar, Marion Schrumpf, François Buscot, Rolf Daniel, Tesfaye Wubet
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2164-15-221

From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism
Cited by: 119
Author(s): Inès Zouari, Alessandra Salvioli, Matteo Chialva, Mara Novero, Laura Miozzi, Gian Carlo Tenore, Paolo Bagnaresi, Paola Bonfante
Software Mentions: 4
Published: over 12 years ago

10.1186/1756-3305-5-270

Predicting the spatio-temporal distribution of Culicoides imicola in Sardinia using a discrete-time population model
Cited by: 18
Author(s): Thibaud Rigot, Annamaria Conte, Maria Goffredo, Els Ducheyne, Guy Hendrickx, Marius Gilbert
Software Mentions: 4
Published: over 13 years ago

10.4161/epi.27806

Epigenomic and transcriptomic signatures of a Klinefelter syndrome (47,XXY) karyotype in the brain
Cited by: 41
Author(s): Joana Viana, Ruth Pidsley, Claire Troakes, Helen Spiers, Chloe Wong, Safa Al‐Sarraj, Ian W. Craig, Leonard C. Schalkwyk, Jonathan Mill
Software Mentions: 4
Published: over 12 years ago

10.1002/ece3.5229

Some like it dry: Water restriction overrides heterogametic sex determination in two reptiles
Cited by: 17
Author(s): Andréaz Dupoué, Olivier Lourdais, Sandrine Meylan, François Brischoux, Frédéric Angelier, David Rozen‐Rechels, Yoan Marcangeli, Béatriz Decencière, Simon Agostini, Jean‐François Le Galliard
Software Mentions: 4
Published: about 7 years ago

10.1099/mgen.0.000498

ActDES – a curated Actinobacterial Database for Evolutionary Studies
Cited by: 2
Author(s): Jana Katharina Schniete, Nelly Sélem-Mójica, Anna Sofia Birke, Pablo Cruz-Morales, Iain S. Hunter, Francisco Barona‐Gómez, Paul A. Hoskisson
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12092433

Oncogenic Orphan Nuclear Receptor NR4A3 Interacts and Cooperates with MYB in Acinic Cell Carcinoma
Cited by: 11
Author(s): David Y. Lee, Kathryn J. Brayer, Yoshitsugu Mitani, Eric A Burns, Pulivarthi H. Rao, Diana Bell, Michelle D. Williams, Renata Ferrarotto, Kristen B. Pytynia, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00439-017-1808-5

Global skin colour prediction from DNA
Cited by: 96
Author(s): Susan Walsh, Lakshmi Chaitanya, Krystal Breslin, Charanya Muralidharan, Agnieszka Bronikowska, Ewelina Pośpiech, Júlia Koller, Leda Kovatsi, Andreas Wollstein, Wojciech Branicki, Fan Liu, Manfred Kayser
Software Mentions: 4
Published: about 9 years ago