10.1002/ece3.5031

Intraspecific and interspecific trait variability in tadpole meta‐communities from the Brazilian Atlantic rainforest
Cited by: 22
Author(s): Mainara Xavier Jordani, Nicolas Mouquet, Lílian Casatti, Marcelo Menin, Denise de Cerqueira Rossa‐Feres, Cécile H. Albert
Software Mentions: 4
Published: over 7 years ago

10.3389/fvets.2021.679368

Effects of Bacillus amyloliquefaciens Instead of Antibiotics on Growth Performance, Intestinal Health, and Intestinal Microbiota of Broilers
Cited by: 13
Author(s): Baikui Wang, Yuguang Zhou, Li Tang, Zihan Zeng, Li Gong, Yanping Wu, Weifen Li
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008551

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance
Cited by: 32
Author(s): Patrícia Alves de Castro, Ana Cristina Colabardini, Adriana Oliveira Manfiolli, Jéssica Chiaratto, Lilian Pereira Silva, Eliciane Cevolani Mattos, Giuseppe Palmisano, Fausto Almeida, Gabriela Félix Persinoti, Laure Nicolas Annick Ries, Laura Mellado, Marina Campos Rocha, Michael Bromley, Roberto Nascimento Silva, Gabriel Scalini de Souza, Flávio Vieira Loures, Iran Malavazi, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0222272

Mortality, perception, and scale: Understanding how predation shapes space use in a wild prey population
Cited by: 6
Author(s): Lindsey N. Messinger, Erica F. Stuber, Christopher J. Chizinski, Joseph J. Fontaine
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.1695

Genome‐wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore
Cited by: 19
Author(s): Astrid Vik Strønen, Bogumiła Jędrzejewska, Cino Pertoldi, Ditte Demontis, Ettore Randi, Magdalena Niedziałkowska, Tomasz Borowik, Vadim E. Sidorovich, Josip Kusak, Ilpo Kojola, Alexandros A. Karamanlidis, Jurijs Ozoliņš, Vitalii Dumenko, Sylwia D. Czarnomska
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0231142

Sex-based differences in movement and space use of the blacktip reef shark, Carcharhinus melanopterus
Cited by: 4
Author(s): Audrey M. Schlaff, Michelle R. Heupel, Vinay Udyawer, Colin A. Simpfendorfer
Software Mentions: 4
Published: over 6 years ago

10.1093/jxb/erx032

Oscillatory signatures underlie growth regimes in Arabidopsis pollen tubes: computational methods to estimate tip location, periodicity, and synchronization in growing cells
Cited by: 43
Author(s): Daniel Santa Cruz Damineli, Maria Teresa Portes, José A. Feijó
Software Mentions: 4
Published: over 9 years ago

10.3390/v12111304

Genetic and Antigenic Evolution of European Swine Influenza A Viruses of HA-1C (Avian-Like) and HA-1B (Human-Like) Lineages in France from 2000 to 2018
Cited by: 7
Author(s): Amélie Chastagner, Séverine Hervé, Stéphane Quéguiner, Edouard Hirchaud, Pierrick Lucas, Stéphane Gorin, Véronique Béven, Nicolas Barbier, Céline Deblanc, Yannick Blanchard, Gaëlle Simon
Software Mentions: 4
Published: over 5 years ago

10.1128/MRA.00832-19

Draft Genome Sequences of Enterococcus faecalis Strains Isolated from Healthy Japanese Individuals
Cited by: 2
Author(s): Kazuki Tanaka, Tsubasa Watabe, Koichi Kato, Tomoya Tsukimi, Mitsuhiko Sato, Toshitaka Odamaki, Masaru Tomita, Shinji Fukuda
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2021.712064

Plastome Evolution in the Hyperdiverse Genus Euphorbia (Euphorbiaceae) Using Phylogenomic and Comparative Analyses: Large-Scale Expansion and Contraction of the Inverted Repeat Region
Cited by: 13
Author(s): Neng Wei, Óscar Alejandro Pérez-Escobar, Paul M. Musili, Wei-Chang Huang, Jun‐Bo Yang, Aijun Hu, Guang‐Wan Hu, Olwen M. Grace, Qingfeng Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2016.00524

Comparative Analysis of Membrane Lipids in Psychrophilic and Mesophilic Freshwater Dinoflagellates
Cited by: 20
Author(s): Andrea Anesi, Ulrike Obertegger, Gert H. Hansen, Assaf Sukenik, Giovanna Flaim, Graziano Guella
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0058804

A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes
Cited by: 7
Author(s): Yan Wang, Reda Rawi, Christoph Wilms, Dominik Heider, Rongge Yang, Daniel Hoffmann
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0213008

Equal but different: Natural ecotones are dissimilar to anthropic edges
Cited by: 28
Author(s): Giselle Martins Lourenço, Glória Ramos Soares, Talita P. Santos, Wesley Dáttilo, André Victor Lucci Freitas, Sérvio Pontes Ribeiro
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2020.01040

Comparison Between Core Set Selection Methods Using Different Illumina Marker Platforms: A Case Study of Assessment of Diversity in Wheat
Cited by: 25
Author(s): Behnaz Soleimani, Heike Lehnert, Jens Keilwagen, Joerg Plieske, Frank Ordon, Sara Naseri Rad, Martin W. Ganal, Sebastian Beier, Dragan Perović
Software Mentions: 4
Published: about 6 years ago

10.1126/sciadv.aax8286

Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity
Cited by: 53
Author(s): Ni Tien, Fang Jiao, Xiulian Yu, Saša Aden, Lucy Ginger, Sophie I. Williams, Fangfang Bai, Vojtěch Pražák, Dimple Karia, Phillip J. Stansfeld, Peijun Zhang, George P. Munson, Gregor Anderluh, Simon Scheuring, R.J.C. Gilbert
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0006351

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)
Cited by: 9
Author(s): Gilberto Santos de Oliveira, Rebeca Kawahara, Lívia Rosa-Fernandes, Simon Ngao Mule, Carla Cristi Avila, Marta Maria Geraldes Teixeira, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 4
Published: over 8 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0130622

DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications
Cited by: 54
Author(s): Yiming Lu, Wubin Qu, Guangyu Shan, Chenggang Zhang
Software Mentions: 4
Published: about 11 years ago

10.1186/s13100-019-0174-3

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
Cited by: 10
Author(s): Tarmo Puurand, Viktoria Kukuškina, Fanny-Dhelia Pajuste, Maido Remm
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-64623-y

Comparative analysis of MACROD1, MACROD2 and TARG1 expression, localisation and interactome
Cited by: 20
Author(s): Roko Žaja, Gülcan Aydin, Barbara E. Lippok, Regina Feederle, Bernhard Lüscher, Karla L. H. Feijs
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-015-2146-4

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa
Cited by: 134
Author(s): Marek L. Borowiec, Ernest K. Lee, Joanna C. Chiu, David C. Plachetzki
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms19051385

Current Challenges in Plant Eco-Metabolomics
Cited by: 90
Author(s): Kristian Peters, Anja Worrich, Alexander Weinhold, Oliver Alka, Gerd Ulrich Balcke, Claudia Birkemeyer, Helge Bruelheide, Onno W Calf, Sophie Dietz, Kai Dührkop, Emmanuel Gaquerel, Uwe Heinig, Marlen Kücklich, Mirka Máčel, Caroline Müller, Yvonne Poeschl, Georg Pohnert, Christian Ristok, Víctor M. Rodríguez, Christoph Ruttkies, Meredith C. Schuman, Rabea Schweiger, Nir Shahaf, Christoph Steinbeck, María Tortosa, Hendrik Treutler, Nico Ueberschaar, Pablo Velasco, B. Weiß, Anja Widdig, Steffen Neumann, Nicole M. van Dam
Software Mentions: 4
Published: over 8 years ago

10.1093/gigascience/giz096

To assemble or not to resemble—A validated Comparative Metatranscriptomics Workflow (CoMW)
Cited by: 24
Author(s): Muhammad Zohaib Anwar, Anders Lanzén, Toke Bang‐Andreasen, Carsten Suhr Jacobsen
Software Mentions: 4
Published: about 7 years ago

10.1080/00324728.2015.1122826

Bayesian demography 250 years after Bayes
Cited by: 48
Author(s): Jakub Bijak, John Bryant
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-015-1391-x

Sequencing the CHO DXB11 genome reveals regional variations in genomic stability and haploidy
Cited by: 73
Author(s): Christian Schrøder Kaas, Claus Kristensen, Michael J Betenbaugh, Mikael Rørdam Andersen
Software Mentions: 4
Published: over 11 years ago

10.3390/vaccines8020228

Identifying Suspect Bat Reservoirs of Emerging Infections
Cited by: 17
Author(s): Daniel Crowley, Daniel J. Becker, Alex D. Washburne, Raina K. Plowright
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.66014

Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses
Cited by: 18
Author(s): Stephan Wilmes, Polly-Anne Jeffrey, Jonathan Martínez-Fábregas, Maximillian Hafer, Paul K. Fyfe, Elizabeth Pöhler, Silvia Gaggero, Martín López‐García, Grant Lythe, Charles Taylor, Thomas Guerrier, David Launay, Suman Mitra, Jacob Piehler, Carmen Molina-Parı́s, Ignacio Moraga
Software Mentions: 4
Published: over 5 years ago

10.1186/s13068-016-0608-9

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Cited by: 91
Author(s): Jaana Kuuskeri, Mari Häkkinen, Pia Laine, Olli‐Pekka Smolander, Fitsum Tamene, Sini Miettinen, Paula Nousiainen, Marianna Kemell, Petri Auvinen, Taina Lundell
Software Mentions: 4
Published: almost 10 years ago

10.1186/1746-6148-9-58

Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
Cited by: 7
Author(s): Bouabid Badaoui, Roberto Grande, Stefano Calza, María C. Cecere, M. Luini, Alessandra Stella, Sara Botti
Software Mentions: 4
Published: over 13 years ago

10.1002/ece3.1325

The relative influence of habitat amount and configuration on genetic structure across multiple spatial scales
Cited by: 15
Author(s): Katie L. Millette, Nusha Keyghobadi
Software Mentions: 4
Published: over 11 years ago

10.1007/s00428-021-03070-0

Histological interpretation of differentiated vulvar intraepithelial neoplasia (dVIN) remains challenging—observations from a bi-national ring-study
Cited by: 11
Author(s): Shatavisha Dasgupta, Elf de Jonge, Mieke Van Bockstal, Luthy S M Wong-Alcala, Suzanne Wilhelmus, Lex A C F Makkus, Katrien Schelfout, Koen K. Van de Vijver, Sander H. J. Smits, Étienne Marbaix, Senada Koljenović, Folkert J. van Kemenade, Patricia C. Ewing‐Graham
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-37309-9

HRGPred: Prediction of herbicide resistant genes with k-mer nucleotide compositional features and support vector machine
Cited by: 8
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, K. Raghunandan, Shachi Gahoi, Nalini Kanta Choudhury, Atmakuri Ramakrishna Rao
Software Mentions: 4
Published: over 7 years ago

10.15252/embj.201899559

Phosphoproteomic screening identifies physiological substrates of the <scp>CDKL</scp> 5 kinase
Cited by: 52
Author(s): Iván Muñoz, Michael Morgan, Julien Peltier, Florian Weiland, Mateusz Gregorczyk, Fiona Brown, Thomas Macartney, Rachel Toth, Matthias Trost, John Rouse
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0226529

Predictive sampling effort and species-area relationship models for estimating richness in fragmented landscapes
Cited by: 4
Author(s): Noé U. de la Sancha, Sarah A. Boyle
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-020-0788-1

Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Cited by: 37
Author(s): Sven-Bastiaan Haange, Nico Jehmlich, Ute Krügel, Constantin A. Hintschich, Dorothee Wehrmann, Mohammed K. Hankir, Florian Seyfried, Jean Froment, Thomas Hübschmann, Susann Müller, Dirk K. Wissenbach, Kang Kang, Christian Buettner, Gianni Panagiotou, Matthias Noll, Ulrike Rolle-Kampczyk, Wiebke Fenske, Martin von Bergen
Software Mentions: 4
Published: over 6 years ago

10.1186/s12870-014-0254-y

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
Cited by: 77
Author(s): Dharani Dhar Burra, Oliver Berkowitz, Pete E. Hedley, Jenny Morris, Svante Resjö, Fredrik Levander, Erland Liljeroth, Erik Andréasson, Erik Alexandersson
Software Mentions: 4
Published: almost 12 years ago

10.3758/s13414-019-01842-0

Media multitasking, mind-wandering, and distractibility: A large-scale study
Cited by: 14
Author(s): Wisnu Wiradhany, Marieke K. van Vugt, Mark Nieuwenstein
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0130954

Reproductive Performance of a Declining Forest Passerine in Relation to Environmental and Social Factors: Implications for Species Conservation
Cited by: 27
Author(s): Alexander Grendelmeier, Raphaël Arlettaz, Michael M. Gerber, Gilberto Pasinelli
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0252092

Passive acoustic monitoring for detecting the Yellow-bellied Glider, a highly vocal arboreal marsupial
Cited by: 3
Author(s): Desley A. Whisson, Freya McKinnon, Matthew Lefoe, Anthony R. Rendall
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2148-12-182

Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae
Cited by: 101
Author(s): Nina Rønsted, Matthew R. E. Symonds, Trine Birkholm, Søren Brøgger Christensen, Alan W. Meerow, Marianne Molander, Per Mølgaard, Gitte Petersen, Nina Rasmussen, J. Van Staden, G.I. Stafford, Anna K. Jäger
Software Mentions: 4
Published: over 14 years ago

10.1186/s12862-020-01635-2

Ecological, genetic and evolutionary drivers of regional genetic differentiation in Arabidopsis thaliana
Cited by: 17
Author(s): Antonio R. Castilla, Belén Méndez‐Vigo, Arnald Marcer, Joaquín Martínez‐Minaya, David Conesa, F. Xavier Picó, Carlos Alonso‐Blanco
Software Mentions: 4
Published: about 6 years ago

10.1186/s13023-018-0919-y

Recent advances in methodology for clinical trials in small populations: the InSPiRe project
Cited by: 28
Author(s): Tim Friede, Martin Posch, Sarah Zohar, Corinne Alberti, Norbert Benda, Emmanuelle Comets, Simon Day, Alex Dmitrienko, Alexandra Gráf, Burak Kürsad Günhan, Siew Wan Hee, Frederike Lentz, Jason Madan, Frank Miller, Thomas Ondra, Michael Pearce, Christian Röver, Artemis Toumazi, Steffen Unkel, Moreno Ursino, Gernot Wassmer, Nigel Stallard
Software Mentions: 4
Published: almost 8 years ago

10.1098/rstb.2019.0732

Oxidative stress and senescence in social insects: a significant but inconsistent link?
Cited by: 23
Author(s): Boris H. Kramer, Volker Nehring, Anja Buttstedt, Jürgen Heınze, Judith Korb, Romain Libbrecht, Karen Meusemann, Robert J. Paxton, Alice Séguret, Florentine Schaub, Abel Bernadou
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008780

Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock
Cited by: 10
Author(s): Biaty Raymond, Loïc Yengo, Roy Costilla, C. Schrooten, A.C. Bouwman, Ben J. Hayes, R.F. Veerkamp, Peter M. Visscher
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0211854

The impact of the method of extracting metabolic signal from 1H-NMR data on the classification of samples: A case study of binning and BATMAN in lung cancer
Cited by: 7
Author(s): Trishanta Padayachee, Tatsiana Khamiakova, Evelyne Louis, Peter Adriaensens, Tomasz Burzykowski
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0234820

Can anthophilous hover flies (Diptera: Syrphidae) discriminate neonicotinoid insecticides in sucrose solution?
Cited by: 3
Author(s): C. Scott Clem, Taylor M. Sparbanie, Alec B. Luro, Alexandra N. Harmon‐Threatt
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1005755

Preferential Allele Expression Analysis Identifies Shared Germline and Somatic Driver Genes in Advanced Ovarian Cancer
Cited by: 12
Author(s): Najeeb Halabi, Alejandra Martinez, Halema Al-Farsi, Eliane Mery-Lamarche, Laurence Puydenus, Pascal Pujol, Hanif Khalak, Cameron Mclurcan, Gwénaël Ferron, Denis Querleu, Iman K. Al-Azwani, Eman K. Al-Dous, Yasmin Ali Mohamoud, Joel A. Malek, Arash Rafii
Software Mentions: 4
Published: over 10 years ago

10.1101/2021.03.17.435863

Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies
Cited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6008

The uplift of the Qinghai–Tibet Plateau and glacial oscillations triggered the diversification of <i>Tetraogallus</i> (Galliformes, Phasianidae)
Cited by: 5
Author(s): Li Ding, Jicheng Liao, Naifa Liu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008761

Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network
Cited by: 13
Author(s): Laura Natalia Balarezo-Cisneros, Steven J. Parker, Marcin G. Fraczek, Soukaina Timouma, Ping Wang, Raymond T. O’Keefe, Catherine B. Millar, Daniela Delneri
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.02290

Organic Matter Regulates Ammonia-Oxidizing Bacterial and Archaeal Communities in the Surface Sediments of Ctenopharyngodon idellus Aquaculture Ponds
Cited by: 27
Author(s): Lili Dai, Chengqing Liu, Liqin Yu, Song Cheng, Peng Liang, Xiaoli Li, Ling Tao, Li Gu
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0198849

The invasiveness of Hypochaeris glabra (Asteraceae): Responses in morphological and reproductive traits for exotic populations
Cited by: 8
Author(s): Irene Martín‐Forés, Belén Acosta Gallo, Isabel Castro, Jesús M. de Miguel, Alejandro del Pozo, Miguel Casado
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0204510

Ranking stressor impacts on periphyton structure and function with mesocosm experiments and environmental-change forecasts
Cited by: 10
Author(s): David M. Costello, Konrad J. Kulacki, Marie McCarthy, Scott D. Tiegs, Bradley J. Cardinale
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: about 6 years ago

10.1186/s12889-018-5169-3

A spatiotemporal mixed model to assess the influence of environmental and socioeconomic factors on the incidence of hand, foot and mouth disease
Cited by: 27
Author(s): Lianfa Li, Wenyang Qiu, Chengdong Xu, Jinfeng Wang
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0246822

Shade, light, and stream temperature responses to riparian thinning in second-growth redwood forests of northern California
Cited by: 12
Author(s): David A. Roon, Jason B. Dunham, Jeremiah D. Groom
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.678100

Assessing Biosynthetic Gene Cluster Diversity of Specialized Metabolites in the Conserved Gut Symbionts of Herbivorous Turtle Ants
Cited by: 8
Author(s): Anaïs Chanson, Corrie S. Moreau, Christophe Duplais
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0219493

Taxonomic and functional diversity of insect herbivore assemblages associated with the canopy-dominant trees of the Azorean native forest
Cited by: 14
Author(s): Carla Rego, Mário Boieiro, François Rigal, Sérvio Pontes Ribeiro, Pedro Cardoso, Paulo A. V. Borges
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0209246

A modular and customizable open-source package for quantum voltage standards operation and control
Cited by: 1
Author(s): Paolo Durandetto, A. Sosso
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0068678

Are High-Impact Species Predictable? An Analysis of Naturalised Grasses in Northern Australia
Cited by: 17
Author(s): Rieks D. van Klinken, F. D. Panetta, Shaun R. Coutts
Software Mentions: 4
Published: about 13 years ago

10.1038/s41598-018-22236-6

Support for viral persistence in bats from age-specific serology and models of maternal immunity
Cited by: 35
Author(s): Alison J. Peel, Kate S. Baker, David T. S. Hayman, Christopher C. Broder, Andrew A. Cunningham, Anthony R. Fooks, Romain Garnier, James Wood, Olivier Restif
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2016.00427

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry
Cited by: 16
Author(s): Potgieter Mg, Kehilwe C. Nakedi, Jon Ambler, Andrew J. M. Nel, Shaun Garnett, Nelson C. Soares, Nicola Mulder, Jonathan M. Blackburn
Software Mentions: 4
Published: over 10 years ago

10.1002/brb3.1622

Network changes in patients with phobic postural vertigo
Cited by: 12
Author(s): Judita Huber, Virginia L. Flanagin, Pauline Popp, Peter zu Eulenburg, Marianne Dieterich
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.01332

Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland
Cited by: 68
Author(s): Anna Maria Fiore-Donno, Tim Richter-Heitmann, Florine Degrune, Kenneth Dumack, Kathleen M. Regan, Sven Marhan, Runa S. Boeddinghaus, Matthias C. Rillig, Michael W. Friedrich, Ellen Kandeler, Michael Bonkowski
Software Mentions: 4
Published: about 7 years ago

10.3389/fmed.2021.656827

Molecular Epidemiology of Salmonellosis in Florida, USA, 2017–2018
Cited by: 6
Author(s): Nitya Singh, Xiaolong Li, Elizabeth Beshearse, Jason Blanton, Jamie DeMent, Arie H. Havelaar
Software Mentions: 4
Published: over 5 years ago

10.1007/s40980-021-00084-9

Looking Back, Looking Forward: Progress and Prospect for Spatial Demography
Cited by: 3
Author(s): Stephen A. Matthews, Laura Stiberman, James Raymer, Tse Chuan Yang, Ezra Gayawan, Sayambhu Saita, Sai Thein Than Tun, Daniel M. Parker, David E. Balk, Stefan Leyk, Mark R. Montgomery, Katherine Curtis, David W. S. Wong
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.52350.2

RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
Cited by: 6
Author(s): Thaís Ramos, Nilbson R. O. Galindo, Raúl Arias‐Carrasco, Cecília F. da Silva, Vinícius Maracaja-Coutinho, Thaís Gaudêncio do Rêgo
Software Mentions: 4
Published: about 5 years ago

10.1016/j.csbj.2020.11.030

The computational approaches of lncRNA identification based on coding potential: Status quo and challenges
Cited by: 22
Author(s): Jing Li, Xuan Zhang, Changning Liu
Software Mentions: 4
Published: over 6 years ago

10.1099/mgen.0.000418

Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences
Cited by: 16
Author(s): Katharine S. Walter, Caroline Colijn, Ted Cohen, Barun Mathema, Qingyun Liu, Jolene R. Bowers, David M. Engelthaler, Apurva Narechania, Darrin Lemmer, Júlio Croda, Jason R Andrews
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2018.00476

The Paralogous Genes PDR18 and SNQ2, Encoding Multidrug Resistance ABC Transporters, Derive From a Recent Duplication Event, PDR18 Being Specific to the Saccharomyces Genus
Cited by: 12
Author(s): Cláudia P. Godinho, Paulo Jorge Dias, Elise Ponçot, Isabel Sá‐Correia
Software Mentions: 4
Published: almost 8 years ago

10.3390/s19224935

SNAPS: Sensor Analytics Point Solutions for Detection and Decision Support Systems
Cited by: 17
Author(s): Eric S. McLamore, Shoumen Datta, Victoria L. Morgan, Nicholas D. Cavallaro, Gregory A. Kiker, Daniel M. Jenkins, Yonghua Rong, Carmen Gomes, Jonathan C. Claussen, Diana Vanegas, Evangelyn C. Alocilja
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.60833

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Cited by: 9
Author(s): Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K. Mayya, George Chung, Jia‐Xuan Chen, Hala Fahs, Yu Guan, Thomas F. Duchaîne, Matthias Selbach, Fabio Piano, Kristin C. Gunsalus
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0240474

Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study
Cited by: 7
Author(s): Cinthia Carolina Abbona, Gustavo Adolfo, Jeff Johnson, Tracy Kim, Adolfo Gil, Steve Wolverton
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40814-020-00692-0

Raising Well at Home: a pre-post feasibility study of a lifestyle intervention for caregivers and their child with obesity
Cited by: 1
Author(s): Debra Haire‐Joshu, C. Schwarz, Rebekah R. Jacob, Pat Kristen, Shelly Johnston, Karyn Quinn, Rachel G. Tabak
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.3503

Radiation of the polymorphic Little Devil poison frog (<i>Oophaga sylvatica</i>) in Ecuador
Cited by: 16
Author(s): Alexandre B. Roland, Juan Carlos Santos, Bella C. Carriker, Stephanie N. Caty, Elicio Tapia, Luis A. Coloma, Lauren A. O’Connell
Software Mentions: 4
Published: almost 9 years ago

10.3390/molecules25081866

Rapid Raman Spectroscopic Analysis of Stress Induced Degradation of the Pharmaceutical Drug Tetracycline
Cited by: 4
Author(s): Christian Domes, Torsten Frosch, Juergen Popp, Torsten Frosch
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0250099

Social dominance and multiple dimensions of psychopathology: An experimental test of reactivity to leadership and subordinate roles
Cited by: 1
Author(s): Sheri L. Johnson, Benjamin A. Swerdlow, Jordan A. Tharp, Serena Chen, Jennifer L. Tackett, Jamie M. Zeitzer
Software Mentions: 4
Published: over 5 years ago

10.15252/embr.201846557

Tamoxifen mechanically reprograms the tumor microenvironment via <scp>HIF</scp> ‐1A and reduces cancer cell survival
Cited by: 55
Author(s): Ernesto Cortés, Dariusz Lachowski, Benjamin Robinson, Müge Sarper, Jaakko Teppo, Stephen D. Thorpe, Tyler J Lieberthal, Kenji Iwamoto, David A. Lee, Mariko Okada‐Hatakeyama, Markku Varjosalo, Armando E. del Río Hernández
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-44542-3

Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytes
Cited by: 9
Author(s): Bénédicte Gnangnon, Aline Fréville, Kátia Cailliau, Catherine Leroy, Caroline De Witte, David Tulasne, Alain Martoriarti, Vincent Jung, Ida Chiara Guerrera, Sabrina Marion, Jamal Khalife, Christine Pierrot
Software Mentions: 4
Published: about 7 years ago

10.1007/s00792-018-1071-2

Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with ‘ARMAN’
Cited by: 10
Author(s): Olga V. Golyshina, Rafael Bargiela, Peter N. Golyshin
Software Mentions: 4
Published: over 7 years ago

10.1111/eva.12555

Focusing the diversity of<i>Gardnerella vaginalis</i>through the lens of ecotypes
Cited by: 33
Author(s): Omar E. Cornejo, Roxana J. Hickey, Haruo Suzuki, Larry J. Forney
Software Mentions: 4
Published: over 8 years ago

10.3390/ani11020562

Spatiotemporal Overlap between the European Brown Hare and Its Potential Predators and Competitors
Cited by: 30
Author(s): Andrea Viviano, Emiliano Mori, Niccolò Fattorini, Giuseppe Mazza, Lorenzo Lazzeri, Alessandra Panichi, Luigi Strianese, Walid Fathy Mohamed
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.1994

Morphological and niche divergence of pinyon pines
Cited by: 12
Author(s): Alejandra Ortíz-Medrano, Daniel P. Scantlebury, Alejandra Vázquez‐Lobo, Alicia Mastretta‐Yanes, Daniel Piñero
Software Mentions: 4
Published: over 10 years ago

10.3390/plants9070829

Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population
Cited by: 8
Author(s): Tally I C Wright, Angela C. Burnett, Howard Griffiths, Maxime Kadner, James S. Powell, Hugo R. Oliveira, Fiona Leigh
Software Mentions: 4
Published: about 6 years ago

10.3390/ani11030825

Insights into the Mitochondrial and Nuclear Genome Diversity of Two High Yielding Strains of Laying Hens
Cited by: 5
Author(s): Clara Dreyling, Vera Sommerfeld, Hanna Iffland, Jörn Bennewitz, M. Rodehutscord, Martin Hasselmann
Software Mentions: 4
Published: over 5 years ago

10.1186/s40462-017-0117-x

Life-history strategy, resource dispersion and phylogenetic associations shape dispersal of a fig wasp community
Cited by: 9
Author(s): Vignesh Venkateswaran, Amitabh Shrivastava, Anusha L. K. Kumble, Renée M. Borges
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0255420

Knowledge, attitude and practices of community pharmacists regarding COVID-19: A paper-based survey in Vietnam
Cited by: 12
Author(s): Huong Thi Thanh Nguyen, Dai Xuan Dinh, Văn Minh Nguyễn
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.3558

Energy and speleogenesis: Key determinants of terrestrial species richness in caves
Cited by: 12
Author(s): Alberto Jiménez‐Valverde, Alberto Sendra, Policarp Garay, Ana Sofía P.S. Reboleira
Software Mentions: 4
Published: almost 9 years ago

10.1186/1756-0500-7-533

FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets
Cited by: 35
Author(s): Anna Shcherbina
Software Mentions: 4
Published: over 12 years ago

10.3389/fmicb.2017.02179

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease
Cited by: 83
Author(s): Yang Heng, Juan Li, Yunhua Xiao, Yanling Gu, Hongwei Liu, Yili Liang, Xueduan Liu, Jin Hu, Delong Meng, Huaqun Yin
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-020-57546-1

Genomic Survey of Salt Acclimation-Related Genes in the Halophilic Cyanobacterium Euhalothece sp. Z-M001
Cited by: 14
Author(s): Hee Wook Yang, Ji-Young Song, Sung Mi Cho, Hak Cheol Kwon, Cheol‐Ho Pan, Youn‐Il Park
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.00025

Exploring Deep Learning for Complex Trait Genomic Prediction in Polyploid Outcrossing Species
Cited by: 71
Author(s): Laura M. Zingaretti, Salvador A. Gezan, Luís Felipe Ventorim Ferrão, Luis F. Osorio, Amparo Monfort, Patricio Muñoz, Vance M. Whitaker, Miguel Pérez‐Enciso
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.116.037556

Construction of a High-Density American Cranberry (<i>Vaccinium macrocarpon</i>Ait.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage Mapping
Cited by: 27
Author(s): Brandon Schlautman, Giovanny Covarrubias‐Pazaran, Luis Diaz‐Garcia, Massimo Iorizzo, James J. Polashock, Edward Grygleski, Nicholi Vorsa, Juan Zalapa
Software Mentions: 4
Published: over 9 years ago

10.1016/j.stemcr.2019.08.014

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation
Cited by: 17
Author(s): Hiromitsu Araki, Fumihito Miura, Akira Watanabe, Chikako Morinaga, Fumiyo Kitaoka, Yuko Kitano, Noriko Sakai, Yu Shibata, Makoto Terada, So Goto, Shinya Yamanaka, Masayo Takahashi, Takashi Ito
Software Mentions: 4
Published: almost 7 years ago

10.1128/mBio.01451-21

Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant <i>Escherichia coli</i> ST131
Cited by: 10
Author(s): Richard Bonnet, Racha Beyrouthy, Marisa Haenni, Marie–Hélène Nicolas–Chanoine, Guillaume Dalmasso, Jean‐Yves Madec
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0131333

Speeding Up Non-Parametric Bootstrap Computations for Statistics Based on Sample Moments in Small/Moderate Sample Size Applications
Cited by: 2
Author(s): Elias Chaibub Neto
Software Mentions: 4
Published: about 11 years ago

10.1007/s11104-019-04012-1

Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield
Cited by: 19
Author(s): Leandro Van Langenhove, Thomas Depaepe, Sara Vicca, Joke Van den Berge, Clément Stahl, Elodie A. Courtois, James T. Weedon, Ifigenia Urbina, Oriol Grau, Dolores Asensio, Josep Peñuelas, Pascal Boeckx, Andreas Richter, Dominique Van Der Straeten, Ivan A. Janssens
Software Mentions: 4
Published: over 7 years ago

10.3389/fmolb.2021.671309

Cancer-Associated circRNA–miRNA–mRNA Regulatory Networks: A Meta-Analysis
Cited by: 21
Author(s): Shaheerah Khan, Atimukta Jha, Amaresh C. Panda, Anshuman Dixit
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-92027-z

Changes in gut microbiota in the acute phase after spinal cord injury correlate with severity of the lesion
Cited by: 29
Author(s): Gabriele Bazzocchi, Silvia Turroni, Maria Chiara Bulzamini, Federica D’Amico, Angelica Bava, Massimo Castiglioni, Valentina Cagnetta, Ernesto Losavio, Maurizio Cazzaniga, Laura Terenghi, Luisa De Palma, Giampiero Frasca, Beatrice Aiachini, Sonia Cremascoli, Antonino Massone, Claudia Oggerino, Maria Pia Onesta, Laura Rapisarda, Maria Cristina Pagliacci, Sauro Biscotto, Michele Scarazzato, Tiziana Giovannini, Mimosa Balloni, Marco Candela, Patrizia Brigidi, Carlotte Kiekens
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.3785

Host species, and not environment, predicts variation in blood parasite prevalence, distribution, and diversity along a humidity gradient in northern South America
Cited by: 39
Author(s): Paulo C. Pulgarín‐R, Juan Pablo Gómez, Scott K. Robinson, Robert E. Ricklefs, Carlos Daniel Cadena
Software Mentions: 4
Published: over 8 years ago