10.1186/s13326-018-0181-1

Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature
Cited by: 32
Author(s): Mercedes Argüello Casteleiro, George Demetriou, Warren Read, Maria Jesus Fernandez Prieto, Nava Maroto, Diego Maseda Fernandez, Goran Nenadić, Julie Klein, John Keane, Robert Stevens
Software Mentions: 4
Published: over 8 years ago

10.1016/j.stemcr.2019.08.014

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation
Cited by: 17
Author(s): Hiromitsu Araki, Fumihito Miura, Akira Watanabe, Chikako Morinaga, Fumiyo Kitaoka, Yuko Kitano, Noriko Sakai, Yu Shibata, Makoto Terada, So Goto, Shinya Yamanaka, Masayo Takahashi, Takashi Ito
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-015-1266-1

Genetic diversity and trait genomic prediction in a pea diversity panel
Cited by: 80
Author(s): Judith Burstin, Pauline Salloignon, Marianne Chabert-Martinello, Jean Bernard Magnin-Robert, Mathieu Siol, Françoise Jacquin, Aurélie Chauveau, Caroline Pont, Grégoire Aubert, Catherine Delaitre, Caroline Truntzer, Gérard Duc
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2288-12-184

Auxiliary variables in multiple imputation in regression with missing X: a warning against including too many in small sample research
Cited by: 113
Author(s): Jochen Hardt, Max Herke, Rainer Leonhart
Software Mentions: 4
Published: over 13 years ago

10.1186/s12887-015-0493-6

Interrelationships between BMI, skinfold thicknesses, percent body fat, and cardiovascular disease risk factors among U.S. children and adolescents
Cited by: 38
Author(s): David S. Freedman, Cynthia L. Ogden, Brian K. Kit
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2164-13-549

Evolutionary force in confamiliar marine vertebrates of different temperature realms: adaptive trends in zoarcid fish transcriptomes
Cited by: 17
Author(s): Heidrun Sigrid Windisch, Magnus Lucassen, Stephan Frickenhaus
Software Mentions: 4
Published: over 14 years ago

10.1186/s12864-017-4416-9

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies
Cited by: 72
Author(s): Dorcus Kholofelo Malomane, Christian Reimer, Steffen Weigend, Annett Weigend, Ahmad Sharifi, Henner Simianer
Software Mentions: 4
Published: over 8 years ago

10.1186/s12866-020-01990-6

The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)
Cited by: 17
Author(s): Chenchen Ma, Hongyang Guo, Haibo Chang, Shi Huang, Shuaiming Jiang, Dongxue Huo, Jiachao Zhang, Xiaopeng Zhu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13104-016-2209-x

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success
Cited by: 14
Author(s): Emily Humble, Michael A. S. Thorne, Jaume Forcada, Joseph I. Hoffman
Software Mentions: 4
Published: almost 10 years ago

10.1155/2015/371960

Uniphasic Blanching of the Fingers, Abnormal Capillaroscopy in Nonsymptomatic Digits, and Autoantibodies: Expanding Options to Increase the Level of Suspicion of Connective Tissue Diseases beyond the Classification of Raynaud’s Phenomenon
Cited by: 11
Author(s): Francesca Ingegnoli, Roberta Gualtierotti, Annalisa Orenti, Tommaso Schioppo, Giovanni Marfia, Rolando Campanella, Claudio Mastaglio, Pier Luigi Meroni, Patrizia Boracchi
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.11286

Intraspecific morphological variation of <i>Bellidiastrum michelii</i> (Asteraceae) along a 1,155 m elevation gradient in the Tatra Mountains
Cited by: 3
Author(s): Piotr Kiełtyk
Software Mentions: 4
Published: over 5 years ago

10.1002/brb3.327

<scp>DTI</scp> and <scp>VBM</scp> reveal white matter changes without associated gray matter changes in patients with idiopathic restless legs syndrome
Cited by: 27
Author(s): Marcus Belke, Johannes T. Heverhagen, Boris Keil, Felix Rosenow, Wolfgang H. Oertel, Karin Stiasny‐Kolster, Susanne Knake, Katja Menzler
Software Mentions: 4
Published: about 11 years ago

10.1128/mSphereDirect.00120-18

Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity
Cited by: 26
Author(s): Fok‐Moon Lum, David Lee, Tze-Kwang Chua, Jeslin J. L. Tan, Cheryl Yi‐Pin Lee, Xuan Li, Yongxiang Fang, Bernett Lee, Wearn‐Xin Yee, Natasha Y. Rickett, Po Ying Chia, Vanessa Lim, Yee‐Sin Leo, David A. Matthews, Julian A. Hiscox, Lisa F. P. Ng
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms20082038

Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells
Cited by: 15
Author(s): Zahra Masoumi, Grégory E. Maes, Koen Herten, Álvaro Cortés-Calabuig, Abdul Ghani Alattar, Eva Hanson, Lena Erlandsson, Éva Mezey, Mattias Magnusson, Joris Robert Vermeesch, Mary Familari, Stefan R. Hansson
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.10052

Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs
Cited by: 71
Author(s): Jie Li, Kecheng Lei, Zengrui Wu, Weihua Li, Guixia Liu, Jianwen Liu, Feixiong Cheng, Yun Tang
Software Mentions: 4
Published: about 10 years ago

10.3389/fnins.2018.00869

Imbalance of Functional Connectivity and Temporal Entropy in Resting-State Networks in Autism Spectrum Disorder: A Machine Learning Approach
Cited by: 11
Author(s): Robert X. Smith, Kay Jann, Mirella Dapretto, Danny J.J. Wang
Software Mentions: 4
Published: over 7 years ago

10.1186/s12917-018-1691-x

An intensive milk replacer feeding program benefits immune response and intestinal microbiota of lambs during weaning
Cited by: 17
Author(s): Qian Zhang, Chong Li, Xiaolin Niu, Zhian Zhang, Fadi Li, Fēi Li
Software Mentions: 4
Published: over 7 years ago

10.3389/fped.2017.00159

Resting-State Functional Connectivity in the Infant Brain: Methods, Pitfalls, and Potentiality
Cited by: 30
Author(s): Chandler R. L. Mongerson, Russell W. Jennings, David Borsook, Lino Becerra, Dusica Bajic
Software Mentions: 4
Published: almost 9 years ago

10.6026/97320630016567

Bacterial community dynamics with rhizosphere of Calotropis procera and Senna alexandrina desert plants in Saudi Arabia
Cited by: 4
Author(s): Diana A. Al-Quwaie
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-93742-3

A HML6 endogenous retrovirus on chromosome 3 is upregulated in amyotrophic lateral sclerosis motor cortex
Cited by: 10
Author(s): Ashley Jones, Alfredo Iacoangeli, Brett N. Adey, Harry Bowles, Aleksey Shatunov, Claire Troakes, Jeremy A. Garson, Adele L. McCormick, Ammar Al‐Chalabi
Software Mentions: 4
Published: about 5 years ago

10.1111/all.14694

Comparative proteomics of common allergenic tree pollens of birch, alder, and hazel
Cited by: 5
Author(s): Barbara Darnhofer, Tamara Tomin, Laura Liesinger, Matthias Schittmayer, Peter Valentin Tomazic, Ruth Birner‐Gruenberger
Software Mentions: 4
Published: over 5 years ago

10.3390/antibiotics10030325

The Phosin PptA Plays a Negative Role in the Regulation of Antibiotic Production in Streptomyces lividans
Cited by: 7
Author(s): Noriyasu Shikura, Emmanuelle Darbon, Catherine Esnault, Ariane Deniset‐Besseau, Delin Xu, Clara Lejeune, Éric Jacquet, Naïma Nhiri, Laila Sago, David Cornu, Sebastiaan Werten, Cécile Martel, Marie‐Joëlle Virolle
Software Mentions: 4
Published: over 5 years ago

10.3390/md18020078

Metabolomic Insights into Marine Phytoplankton Diversity
Cited by: 17
Author(s): Rémy Marcellin-Gros, Gwenaël Piganeau, Didier Stien
Software Mentions: 4
Published: over 6 years ago

10.1007/s00248-017-1108-6

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent
Cited by: 44
Author(s): Thiago R. Schlemper, Johannes A. van Veen, Eiko E. Kuramae
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-12-439

SCFIA: a statistical corresponding feature identification algorithm for LC/MS
Cited by: 8
Author(s): Jian Cui, Xuepo Ma, Long Chen, Jianqiu Zhang
Software Mentions: 4
Published: over 14 years ago

10.1099/mgen.0.000070

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
Cited by: 53
Author(s): Tim Dallman, Thomas Inns, Thibaut Jombart, Philip Ashton, Nicholas J. Loman, Carol Chatt, Ute Messelhaeusser, Wolfgang Rabsch, Sandra Simon, Sergejs Nikisins, Helen Bernard, Simon Le Hello, Nathalie Jourdan da-Silva, Christian Kornschober, Joël Mossong, Peter M. Hawkey, Elizabeth de Pinna, Kathie Grant, Paul Cleary
Software Mentions: 4
Published: almost 10 years ago

10.1002/mbo3.727

Change in the intestinal bacterial community structure associated with environmental microorganisms during the growth of <i>Eriocheir sinensis</i>
Cited by: 25
Author(s): Chenhe Wang, Yanfeng Zhou, Dawei Lv, You Ge, Huan Li, You Yang
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-017-0370-7

The Inuit gut microbiome is dynamic over time and shaped by traditional foods
Cited by: 43
Author(s): Geneviève Dubois, Catherine Girard, François‐Joseph Lapointe, B. Jesse Shapiro
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1008551

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance
Cited by: 32
Author(s): Patrícia Alves de Castro, Ana Cristina Colabardini, Adriana Oliveira Manfiolli, Jéssica Chiaratto, Lilian Pereira Silva, Eliciane Cevolani Mattos, Giuseppe Palmisano, Fausto Almeida, Gabriela Félix Persinoti, Laure Nicolas Annick Ries, Laura Mellado, Marina Campos Rocha, Michael Bromley, Roberto Nascimento Silva, Gabriel Scalini de Souza, Flávio Vieira Loures, Iran Malavazi, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51912-4

Pollinator foraging flexibility mediates rapid plant-pollinator network restoration in semi-natural grasslands
Cited by: 13
Author(s): Norbertas Noreika, Ignasi Bartomeus, Marie Winsa, Riccardo Bommarco, Erik Öckinger
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9081585

Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Cited by: 11
Author(s): Ana C. Reis, Liliana C. M. Salvador, Suelee Robbe‐Austerman, Rogério Tenreiro, Ana Botelho, Teresa Albuquerque, Mónica V. Cunha
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0191426

Different in the dark: The effect of habitat characteristics on community composition and beta diversity in bromeliad microfauna
Cited by: 15
Author(s): Annika Busse, Pablo A. P. Antiqueira, Alexandre Schneid Neutzling, Anna Maria Wolf, Gustavo Q. Romero, Jana S. Petermann
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0226691

Distribution of aerophilous diatom communities associated with terrestrial green macroalgae in the South Shetland Islands, Maritime Antarctica
Cited by: 2
Author(s): Juliana Ferreira da Silva, Maria Angélica Oliveira Linton, Raylane Ribeiro da Anunciação, Eduardo Pereira da Silva, Rodrigo Paidano Alves, Adriano Luís Schünemann, Filipe de Carvalho Victória, Margéli Pereira de Albuquerque, Antônio Batista Pereira
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0157442

Dung Beetles along a Tropical Altitudinal Gradient: Environmental Filtering on Taxonomic and Functional Diversity
Cited by: 90
Author(s): Cássio Alencar Nunes, Rodrigo Fagundes Braga, José Eugênio Côrtes Figueira, Frederico S. Neves, G. Wilson Fernandes
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0213008

Equal but different: Natural ecotones are dissimilar to anthropic edges
Cited by: 28
Author(s): Giselle Martins Lourenço, Glória Ramos Soares, Talita P. Santos, Wesley Dáttilo, André Victor Lucci Freitas, Sérvio Pontes Ribeiro
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0066829

Forest Age and Plant Species Composition Determine the Soil Fungal Community Composition in a Chinese Subtropical Forest
Cited by: 47
Author(s): Yu Wu, Tesfaye Wubet, Stefan Trogisch, Sabine Both, Thomas Scholten, Helge Bruelheide, François Buscot
Software Mentions: 4
Published: about 13 years ago

10.1002/ece3.5204

Insights on the functional composition of specialist and generalist birds throughout continuous and fragmented forests
Cited by: 22
Author(s): Luiz dos Anjos, Gabriela Menezes Bochio, Hugo Reis Medeiros, Bia de Arruda Almeida, Barbara Rocha Arakaki Lindsey, Larissa Corsini Calsavara, Milton Cézar Ribeiro, José Marcelo Domingues Torezan
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.5816

Spatial and temporal structure of diversity and demographic dynamics along a successional gradient of tropical forests in southern Brazil
Cited by: 18
Author(s): Cilmar Antônio Dalmaso, Márcia C. M. Marques, Pedro Higuchi, Victor P. Zwiener, Renato Marques
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.3558

Energy and speleogenesis: Key determinants of terrestrial species richness in caves
Cited by: 12
Author(s): Alberto Jiménez‐Valverde, Alberto Sendra, Policarp Garay, Ana Sofía P.S. Reboleira
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2019.01332

Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland
Cited by: 68
Author(s): Anna Maria Fiore-Donno, Tim Richter-Heitmann, Florine Degrune, Kenneth Dumack, Kathleen M. Regan, Sven Marhan, Runa S. Boeddinghaus, Matthias C. Rillig, Michael W. Friedrich, Ellen Kandeler, Michael Bonkowski
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2017.01465

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China
Cited by: 28
Author(s): Caili Sun, Zongzheng Chai, Guobin Liu, Sha Xue
Software Mentions: 4
Published: almost 9 years ago

10.1111/jbi.12970

Assembly patterns of soil-dwelling lichens after glacier retreat in the European Alps
Cited by: 27
Author(s): Juri Nascimbene, Helmut Mayrhofer, Matteo Dainese, Peter O. Bilovitz
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pntd.0006351

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)
Cited by: 9
Author(s): Gilberto Santos de Oliveira, Rebeca Kawahara, Lívia Rosa-Fernandes, Simon Ngao Mule, Carla Cristi Avila, Marta Maria Geraldes Teixeira, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 4
Published: over 8 years ago

10.1038/srep22125

Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread
Cited by: 152
Author(s): Aurèle Toussaint, Nicolas Charpin, Sébastien Brosse, Sébastien Villéger
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-020-80077-8

Repeated surveying over 6 years reveals that fine-scale habitat variables are key to tropical mountain ant assemblage composition and functional diversity
Cited by: 3
Author(s): Mulalo M. Muluvhahothe, Grant S. Joseph, Colleen L. Seymour, Thinandavha C. Munyai, Stefan H. Foord
Software Mentions: 4
Published: over 5 years ago

10.1128/mBio.00812-18

Rethinking the Coral Microbiome: Simplicity Exists within a Diverse Microbial Biosphere
Cited by: 86
Author(s): Alejandra Hernández‐Agreda, William Leggat, Pim Bongaerts, César Herrera, Tracy D. Ainsworth
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.00513

Estimating Conformational Traits in Dairy Cattle With DeepAPS: A Two-Step Deep Learning Automated Phenotyping and Segmentation Approach
Cited by: 13
Author(s): Jessica Nye, Laura M. Zingaretti, Miguel Pérez‐Enciso
Software Mentions: 4
Published: about 6 years ago

10.3390/molecules25235505

Carbon Atoms Speaking Out: How the Geometric Sensitivity of 13C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
Cited by: 5
Author(s): Sascha Jähnigen, Daniel Sebastiani
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.658267

Optimizing Genomic-Enabled Prediction in Small-Scale Maize Hybrid Breeding Programs: A Roadmap Review
Cited by: 11
Author(s): Roberto Fritsche‐Neto, Giovanni Galli, Karina Lima Reis Borges, Germano Costa‐Neto, Filipe Couto Alves, Felipe Sabadin, Danilo Hottis Lyra, Pedro Patric Pinho Morais, Luciano Rogério Braatz de Andrade, Ítalo Stefanine Correia Granato, José Crossa
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.116.032532

Optimizing Training Population Data and Validation of Genomic Selection for Economic Traits in Soft Winter Wheat
Cited by: 46
Author(s): Amber Hoffstetter, Antonio G. Cabrera, Mao Fang Huang, Clay Sneller
Software Mentions: 4
Published: almost 10 years ago

10.1186/s40851-015-0013-4

Spatial and temporal variation at major histocompatibility complex class IIB genes in the endangered Blakiston’s fish owl
Cited by: 18
Author(s): Tetsuo I. Kohyama, Keita Omote, Chizuko Nishida, Takeshi Takenaka, Keisuke Saito, Satoshi Fujimoto, Ryuichi Masuda
Software Mentions: 4
Published: over 11 years ago

10.1534/g3.119.400336

A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Cited by: 20
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Jaime Cuevas, J. Cricelio Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Philomin Juliana, Ravi P. Singh
Software Mentions: 4
Published: almost 7 years ago

10.1534/g3.120.401132

Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny
Cited by: 8
Author(s): Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, W. Powell, Ian Mackay
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.120.401244

Bayesian and Machine Learning Models for Genomic Prediction of Anterior Cruciate Ligament Rupture in the Canine Model
Cited by: 12
Author(s): Louise Baker, Mehdi Momen, K.C.K. Chan, Nathan Bollig, Fernando Brito Lopes, Guilherme J. M. Rosa, Rory J. Todhunter, Emily E. Binversie, Susannah J. Sample, Peter Muir
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0235263

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications
Cited by: 2
Author(s): George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.120.401733

Maximum <i>a posteriori</i> Threshold Genomic Prediction Model for Ordinal Traits
Cited by: 3
Author(s): Abelardo Montesinos‐López, Humberto Gutiérrez Pulido, Osval A. Montesinos-L֯ópez, J. Crossa
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes11080838

Insights into the Genetic Architecture of Bran Friability and Water Retention Capacity, Two Important Traits for Whole Grain End-Use Quality in Winter Wheat
Cited by: 3
Author(s): Sviatoslav Navrotskyi, Vikas Belamkar, P. S. Baenziger, Devin J. Rose
Software Mentions: 4
Published: about 6 years ago

10.1038/s41437-021-00412-1

A guide for kernel generalized regression methods for genomic-enabled prediction
Cited by: 12
Author(s): Abelardo Montesinos‐López, Osval A. Montesinos-L֯ópez, J. Cricelio Montesinos-López, Carlos Flores-Cortés, Roberto De Rosa, J. Crossa
Software Mentions: 4
Published: over 5 years ago

10.1007/s00122-017-2944-y

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing
Cited by: 77
Author(s): Elsa Sverrisdóttir, Stephen Byrne, Ea Høegh Riis Sundmark, Heidi Øllegaard Johnsen, Hanne Grethe Kirk, Torben Asp, Luc Janss, Kåre Lehmann Nielsen
Software Mentions: 4
Published: about 9 years ago

10.3390/pathogens9090723

Differences in the Endophytic Microbiome of Olive Cultivars Infected by Xylella fastidiosa across Seasons
Cited by: 35
Author(s): Annalisa Giampetruzzi, Paula Baptista, Massimiliano Morelli, Cristina Cameirão, Teresa Lino-Neto, Daniela Costa, Giusy D’Attoma, Raied Abou Kubaa, Giuseppe Altamura, María Saponari, José Alberto Pereira, P. Saldarelli
Software Mentions: 4
Published: almost 6 years ago

10.3389/fchem.2019.00519

Augmenting Basin-Hopping With Techniques From Unsupervised Machine Learning: Applications in Spectroscopy and Ion Mobility
Cited by: 16
Author(s): Chao Zhou, Christian Ieritano, W. Scott Hopkins
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.2768

Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America
Cited by: 44
Author(s): Jana M. U’Ren, A. Elizabeth Arnold
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.1028

Genetic architecture of pollination syndrome transition between hummingbird-specialist and generalist species in the genus<i>Rhytidophyllum</i>(Gesneriaceae)
Cited by: 20
Author(s): Hermine Alexandre, Justine Vrignaud, Brigitte Mangin, Simon Joly
Software Mentions: 4
Published: about 11 years ago

10.7717/peerj.3667

Changes in zooplankton community, and seston and zooplankton fatty acid profiles at the freshwater/saltwater interface of the Chowan River, North Carolina
Cited by: 8
Author(s): Deborah A. Lichti, Jacques Rinchard, David G. Kimmel
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.9388

Geographic variation in the skull morphology of the lesser grison (<i>Galictis cuja</i>: Carnivora, Mustelidae) from two Brazilian ecoregions
Cited by: 4
Author(s): Raissa Prior Migliorini, Rodrigo Fornel, Carlos Benhur Kasper
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.8991

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit
Cited by: 9
Author(s): Víctor Olalde‐Portugal, José Luis Cabrera-Ponce, Argel Gastélum-Arellánez, Armando Guerrero‐Rangel, Robert Winkler, Silvia Valdés‐Rodríguez
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0206317

Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Cited by: 11
Author(s): Kayode T. Adu, Richard Wilson, David S. Nichols, Anthony L. Baker, John P. Bowman, ML Britz
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12998-018-0182-2

Exploring the measurement properties of the osteopathy clinical teaching questionnaire using Rasch analysis
Cited by: 6
Author(s): Brett Vaughan
Software Mentions: 4
Published: over 8 years ago

10.3390/dj6030047

Detection of Caries Around Resin-Modified Glass Ionomer and Compomer Restorations Using Four Different Modalities In Vitro
Cited by: 4
Author(s): Tamara E. Abrams, Stephen H. Abrams, Koneswaran Sivagurunathan, Veronika Moravan, Warren Hellen, Gary I. Elman, Bennett T. Amaechi, Andreas Mandelis
Software Mentions: 4
Published: almost 8 years ago

10.1017/S1469440918003643

Persistence and gender differences in protection against severe fever with thrombocytopaenia syndrome virus with natural infection: a 4-year follow-up and mathematical prediction study
Cited by: 3
Author(s): Rui Qi, Yu Huang, Xue Jie Yu
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0058804

A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes
Cited by: 7
Author(s): Yan Wang, Reda Rawi, Christoph Wilms, Dominik Heider, Rongge Yang, Daniel Hoffmann
Software Mentions: 4
Published: over 13 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: almost 7 years ago

10.1101/2021.03.17.435863

Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies
Cited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020411

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13092143

Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid
Cited by: 5
Author(s): Maria Hernandez-Valladares, Rebecca Wangen, Elise Aasebø, Håkon Reikvam, Frode S. Berven, Frode Selheim, Øystein Bruserud
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0188568

Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits
Cited by: 22
Author(s): Jessica A. Conlan, Craig Humphrey, Andrea Severati, David S. Francis
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers11020263

Integrative Omic Profiling Reveals Unique Hypoxia Induced Signatures in Gastric Cancer Associated Myofibroblasts
Cited by: 2
Author(s): Hanna Najgebauer, Andrew F. Jarnuczak, Andrea Varró, Christopher M. Sanderson
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0206492

Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments
Cited by: 6
Author(s): Jiří Neustupa, Yvonne‬ Němcová
Software Mentions: 4
Published: almost 8 years ago

10.3390/cancers12030709

Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia
Cited by: 30
Author(s): Elise Aasebø, Frode S. Berven, Sushma Bartaula-Brevik, Tomasz Stokowy, Randi Hovland, Marc Vaudel, Stein Ove Døskeland, Emmet McCormack, Tanveer S. Batth, Jesper V. Olsen, Øystein Bruserud, Frode Selheim, Maria Hernandez-Valladares
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.581430

Environmental and Anthropogenic Factors Shape Major Bacterial Community Types Across the Complex Mountain Landscape of Switzerland
Cited by: 9
Author(s): Johanna Mayerhofer, Daniel Wächter, Pierluigi Calanca, Lukas Kohli, Tobias Roth, R. G. Meuli, Franco Widmer
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.682142

Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs
Cited by: 12
Author(s): Sara Marañón-Jiménez, Dajana Radujković, Erik Verbruggen, Oriol Grau, Matthias Cuntz, Josep Peñuelas, Andreas Richter, Marion Schrumpf, Corinna Rebmann
Software Mentions: 4
Published: about 5 years ago

10.1126/sciadv.abf9557

Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia
Cited by: 19
Author(s): Dilli Prasad Rijal, Peter D. Heintzman, Youri Lammers, Nigel G. Yoccoz, Kelsey Erin Lorberau, Iva Pitelkova, Tomasz Goslar, Francisco Javier Ancin‐Murguzur, J. Sakari Salonen, Karin F. Helmens, Jostein Bakke, Mary E. Edwards, Torbjørn Alm, Kari Anne Bråthen, Antony G. Brown, Inger Greve Alsos
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-08083-x

Periphyton effects on bacterial assemblages and harmful cyanobacterial blooms in a eutrophic freshwater lake: a mesocosm study
Cited by: 18
Author(s): Yingshun Cui, Long Jin, So-Ra Ko, Seong-Jun Chun, Hyung-Seok Oh, Chang‐Soo Lee, Ankita Srivastava, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-020-67717-9

Diversity of a bacterial community associated with Cliona lobata Hancock and Gelliodes pumila (Lendenfeld, 1887) sponges on the South-East coast of India
Cited by: 5
Author(s): R. Meenatchi, Pownraj Brindangnanam, Saqib Hassan, Rathna Kumarasamy, George Seghal Kiran, Joseph Selvin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-98979-6

Biodiversity and biocatalyst activity of culturable hydrocarbonoclastic fungi isolated from Marac–Moruga mud volcano in South Trinidad
Cited by: 1
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41396-020-0676-5

Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium
Cited by: 27
Author(s): Hwee Sze Tee, David W. Waite, Leo S. Payne, Martin Middleditch, Susie Wood, Kim M. Handley
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2012.00249

Compromise of Multiple Time-Resolved Transcriptomics Experiments Identifies Tightly Regulated Functions
Cited by: 6
Author(s): Sebastian Klie, Camila Caldana, Zoran Nikoloski
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0195472

Distinct seasonal infectious agent profiles in life-history variants of juvenile Fraser River Chinook salmon: An application of high-throughput genomic screening
Cited by: 33
Author(s): Strahan Tucker, Shaorong Li, Karia H. Kaukinen, David A. Patterson, Kristina M. Miller
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2021.679428

Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Cited by: 17
Author(s): Adeline Stewart, Delphine Rioux, Frédéric Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Éric Maréchal, Éric Coissac
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-53155-9

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data
Cited by: 10
Author(s): Nicolò Zanardi, Martina Morini, M. A. Tangaro, Federico Zambelli, Maria Carla Bosco, Luigi Varesio, Alessandra Eva, Davide Cangelosi
Software Mentions: 4
Published: over 6 years ago

10.1038/s41419-021-04057-0

TRAIP modulates the IGFBP3/AKT pathway to enhance the invasion and proliferation of osteosarcoma by promoting KANK1 degradation
Cited by: 14
Author(s): Mi Li, Wei Wu, Sisi Deng, Zengwu Shao, Xin Jin
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8486

Patterns of biodiversity response along a gradient of forest use in Eastern Amazonia, Brazil
Cited by: 7
Author(s): Sérgio Milheiras, Marcelino Carneiro Guedes, Fernando A. B. Silva, Perseu Silva Aparicio, Georgina M. Mace
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2021.109583

Dynamic bi-directional phosphorylation events associated with the reciprocal regulation of synapses during homeostatic up- and down-scaling
Cited by: 19
Author(s): Kristina Desch, Julian D. Langer, Erin M. Schuman
Software Mentions: 4
Published: about 5 years ago

10.1093/aobpla/plaa012

The climatic association of population divergence and future extinction risk of Solanum pimpinellifolium
Cited by: 8
Author(s): Ya‐Ping Lin, Cheng-Yueh Lu, Cheng‐Ruei Lee
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2021.636915

Trait Diversity of Pulse Species Predicts Agroecosystem Properties Trade-Offs
Cited by: 0
Author(s): Julie Guiguitant, Denis Vile, Hélène Marrou
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.2398

Patchiness of forest landscape can predict species distribution better than abundance: the case of a forest-dwelling passerine, the short-toed treecreeper, in central Italy
Cited by: 12
Author(s): Marco Basile, Francesco Valerio, Rosario Balestrieri, Mario Posillico, Rodolfo Bucci, Tiziana Altea, Bruno De Cinti, Giorgio Matteucci
Software Mentions: 4
Published: almost 10 years ago

10.26508/lsa.201900332

Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma
Cited by: 4
Author(s): Elena Afanasyeva, Moritz Gartlgruber, Tatsiana Ryl, Bieke Decaesteker, Geertrui Denecker, Gregor Mönke, Umut Toprak, Andrés Flórez, Alica Torkov, Daniel Dreidax, Carl Herrmann, Konstantin Okonechnikov, Sara Ek, Ashwini Kumar Sharma, Vitaliya Sagulenko, Frank Speleman, Kai Oliver Henrich, Frank Westermann
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0186794

A deep transcriptomic resource for the copepod crustacean Labidocera madurae: A potential indicator species for assessing near shore ecosystem health
Cited by: 16
Author(s): Vittoria Roncalli, Andrew E. Christie, Stephanie A. Sommer, Matthew Cieslak, Daniel K. Hartline, Petra H. Lenz
Software Mentions: 4
Published: almost 9 years ago