Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.24751.2

https://doi.org/10.12688/f1000research.24751.2

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

Cited by: 9
Author(s): Evan Bolyen, Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp, Darrin Lemmer, Jason W. Sahl, Andrew Sanchez, Chris Holdgraf, Chris Sewell, Aakash G. Choudhury, John Stachurski, Matthew R. McKay, Anthony Simard, David M. Engelthaler, Michael Worobey, Paul Keim, J. Gregory Caporaso
Published: about 4 years ago

Software Mentions 4

pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: genome

Papers that mentioned: 36
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284