10.3390/ijerph18157847

COVID-19 Prevention and Control Measures in Workplace Settings: A Rapid Review and Meta-Analysis
Cited by: 69
Author(s): Carolyn Ingram, Vicky Downey, Mark Roe, Yanbing Chen, Mary Archibald, Kadri-Ann Kallas, J Selva Kumar, Peter Naughton, Cyril Onwuelaza Uteh, Alejandro Rojas-Chaves, Shibu Shrestha, Shiraz Syed, Fionn Büttner, Conor Buggy, Carla Perrotta
Software Mentions: 4
Published: about 5 years ago

10.3390/genes11111303

Mitochondrial Sequencing of Missing Persons DNA Casework by Implementing Thermo Fisher’s Precision ID mtDNA Whole Genome Assay
Cited by: 19
Author(s): Daniela Cuenca, Jessica Battaglia, Michelle Halsing, Sandra Sheehan
Software Mentions: 4
Published: almost 6 years ago

10.1093/jncics/pky082

Markers of Immune Activation and Inflammation, and Non-Hodgkin Lymphoma: A Meta-Analysis of Prospective Studies
Cited by: 28
Author(s): Solomon B. Makgoeng, Rachel Bolanos, Christie Y. Jeon, Robert E. Weiss, Onyebuchi A. Arah, Elizabeth C. Breen, Otoniel Martı́nez-Maza, Shehnaz K. Hussain
Software Mentions: 4
Published: almost 8 years ago

10.3390/s16121980

Emotion-Bracelet: A Web Service for Expressing Emotions through an Electronic Interface
Cited by: 2
Author(s): Alicia Martínez, Hugo Estrada, Alejandra Molina, Manuel Mejia, Joaquín Pérez
Software Mentions: 4
Published: over 9 years ago

10.1186/gb-2014-15-4-r57

Evidence for the biogenesis of more than 1,000 novel human microRNAs
Cited by: 214
Author(s): Marc R. Friedländer, Esther Lizano, Anna J.S. Houben, Daniela Bezdan, Mónica Báñez-Coronel, Grzegorz Kudla, Elisabet Mateu-Huertas, Birgit Kagerbauer, Justo González, Kevin C. Chen, Emily LeProust, Eulàlia Martı́, Xavier Estivill
Software Mentions: 4
Published: over 12 years ago

10.3389/fnmol.2019.00241

A TBR1-K228E Mutation Induces Tbr1 Upregulation, Altered Cortical Distribution of Interneurons, Increased Inhibitory Synaptic Transmission, and Autistic-Like Behavioral Deficits in Mice
Cited by: 21
Author(s): Chaehyun Yook, Kyungdeok Kim, Doyoun Kim, Hyojin Kang, Sun-Gyun Kim, Eunjoon Kim, Soo Young Kim
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2021.649208

TRIB3 Promotes the Malignant Progression of Bladder Cancer: An Integrated Analysis of Bioinformatics and in vitro Experiments
Cited by: 4
Author(s): Jieping Yang, Jiaxing Lin, Jing An, Yunan Zhao, Siyang Jing, Meng Yu, Yuyan Zhu, Yang Yao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-79422-8

FlavorGraph: a large-scale food-chemical graph for generating food representations and recommending food pairings
Cited by: 13
Author(s): Donghyeon Park, Keonwoo Kim, Seoyoon Kim, Michael Spranger, Jaewoo Kang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255803

In silico identification of natural product inhibitors against Octamer-binding transcription factor 4 (Oct4) to impede the mechanism of glioma stem cells
Cited by: 5
Author(s): Chirasmita Nayak, Sanjeev Kumar Singh
Software Mentions: 4
Published: almost 5 years ago

10.1002/mbo3.967

Effect of <i>Streptomyces</i> probiotics on the gut microbiota of <i>Litopenaeus vannamei</i> challenged with <i>Vibrio parahaemolyticus</i>
Cited by: 21
Author(s): José Manuel Mazón‐Suástegui, Joan Salas‐Leiva, Ricardo Medina-Marrero, Ricardo Medina-García, Milagro García‐Bernal
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-017-1698-5

NaviSE: superenhancer navigator integrating epigenomics signal algebra
Cited by: 5
Author(s): Alex M. Ascensión, Mikel Arrospide-Elgarresta, Ander Izeta, Marcos J. Araúzo-Bravo
Software Mentions: 4
Published: about 9 years ago

10.1523/ENEURO.0524-20.2021

Sharing an Open Stimulation System for Auditory EEG Experiments Using Python, Raspberry Pi, and HifiBerry
Cited by: 1
Author(s): Alexandra Corneyllie, Fabien Perrin, Lizette Heine
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2164-15-218

Deciphering gamma-decalactone biosynthesis in strawberry fruit using a combination of genetic mapping, RNA-Seq and eQTL analyses
Cited by: 60
Author(s): José F. Sánchez-Sevilla, Eduardo Cruz-Rus, Victoriano Valpuesta, Miguel A. Botella, Iraida Amaya
Software Mentions: 4
Published: over 12 years ago

10.1186/s13643-019-1026-4

The effect of acute stress on salivary markers of inflammation: a systematic review protocol
Cited by: 16
Author(s): Danica C. Slavish, Yvette Z. Szabo
Software Mentions: 4
Published: over 7 years ago

10.1111/ics.12536

Use of inline near‐infrared spectroscopy to predict the viscosity of shampoo using multivariate analysis
Cited by: 6
Author(s): Kiran Haroon, Ali Arafeh, Philip A. Martin, Thomas L. Rodgers, César Mendoza, M. R. Baker
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-20983-0

Trace metals from historical mining sites and past metallurgical activity remain bioavailable to wildlife today
Cited by: 41
Author(s): Estelle Camizuli, Renaud Scheifler, Stéphane Garnier, Fabrice Monna, R. Losno, Claude Gourault, Gilles Hamm, Caroline Lachiche, Guillaume Delivet, Carmela Château, Paul Alibert
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-015-1954-x

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken
Cited by: 8
Author(s): David Wragg, Andrew S. Mason, Lejun Yu, Richard Kuo, Raman Akinyanju Lawal, Takele Taye Desta, Joram M. Mwacharo, Chang-Yeon Cho, Stephen J. Kemp, David W. Burt, Olivier Hanotte
Software Mentions: 4
Published: almost 11 years ago

10.1007/s00056-020-00223-9

Does playing a wind instrument influence tooth position and facial morphology?
Cited by: 4
Author(s): F.N. van der Weijden, Reinder Kuitert, Frank Lobbezoo, Cees Valkenburg, G.A. van der Weijden, Dagmar Else Slot
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-019-1432-1

The multifactorial nature of beak and skull shape evolution in parrots and cockatoos (Psittaciformes)
Cited by: 35
Author(s): Jen A. Bright, Jesús Marugán‐Lobón, Emily J. Rayfield, Samuel N. Cobb
Software Mentions: 4
Published: about 7 years ago

10.1101/2020.08.17.254839

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
Cited by: 5
Author(s): Justin Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica Munoz‐Torres, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.62438

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping
Cited by: 52
Author(s): Philip P. Adams, Gabriele Baniulyte, Caroline Esnault, Kavya Chegireddy, Navjot Singh, Molly Monge, Ryan Dale, Gisela Storz, Joseph T. Wade
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255545

Comparative efficacy of single-inhaler triple therapies for COPD: A protocol for systematic review and network meta-analysis
Cited by: 0
Author(s): Yu-Long Jiang, Hao Hu, Siu-wai Leung
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-07132-6

Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2
Cited by: 35
Author(s): Julie E. Hernández-Salmerón, Gabriel Moreno‐Hagelsieb
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-88106-w

Microstructures amplify carotenoid plumage signals in tanagers
Cited by: 15
Author(s): Dakota E. McCoy, Allison J. Shultz, Charles Vidoudez, Emma van der Heide, Jacqueline E. Dall, Sunia A. Trauger, David Haig
Software Mentions: 4
Published: over 5 years ago

10.1088/1741-2552/ab208d

Realistic volumetric-approach to simulate transcranial electric stimulation—ROAST—a fully automated open-source pipeline
Cited by: 199
Author(s): Yu Huang, Abhishek Datta, Marom Bikson, Lucas C. Parra
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0094328

Network Analysis of Inflammatory Genes and Their Transcriptional Regulators in Coronary Artery Disease
Cited by: 54
Author(s): Jiny Nair, Madankumar Ghatge, Vijay V. Kakkar, Jayashree Shanker
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pntd.0009719

Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex
Cited by: 6
Author(s): Luisa Berná, Gonzalo Greif, Sebastián Pita, Paula Faral-Tello, Florencia Díaz-Viraqué, Rita de Cássia Moreira de Souza, Gustavo Adolfo Vallejo, Fernando Álvarez-Valín, Carlos Robello
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40795-019-0315-6

Relationship between ethanol consumption and TBL2 rs17145738 on LDL-C concentration in Japanese adults: a four season 3-day weighed diet record study
Cited by: 1
Author(s): Shin‐ichi Akimoto, Chiho Goto, Kiyonori Kuriki
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2164-15-631

Analysis of stranded information using an automated procedure for strand specific RNA sequencing
Cited by: 29
Author(s): Bárður Sigurgeirsson, Olof Emanuelsson, Joakim Lundeberg
Software Mentions: 4
Published: about 12 years ago

10.3390/s21113773

SDN-Based Network Slicing Mechanism for a Scalable 4G/5G Core Network: A Kubernetes Approach
Cited by: 16
Author(s): Robert Botez, José Costa-Requena, Iustin-Alexandru Ivanciu, Vlad Strautiu, Virgil Dobrota
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0072420

Are Regional Habitat Models Useful at a Local-Scale? A Case Study of Threatened and Common Insectivorous Bats in South-Eastern Australia
Cited by: 5
Author(s): Anna McConville, Bradley Law, Michael Mahony
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0044000

GPU-FS-kNN: A Software Tool for Fast and Scalable kNN Computation Using GPUs
Cited by: 62
Author(s): Ahmed Shamsul Arefin, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12864-020-06926-y

Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data
Cited by: 17
Author(s): Ewelina Pośpiech, Magdalena Kukla-Bartoszek, Joanna Karłowska-Pik, Piotr Zieliński, Anna Woźniak, Michał Boroń, Michał Dąbrowski, Magdalena Zubańska, Agata Jarosz, Tomasz Grzybowski, Rafał Płoski, Magdalena Spólnicka, Wojciech Branicki
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.58511

Transmission of West Nile and five other temperate mosquito-borne viruses peaks at temperatures between 23°C and 26°C
Cited by: 75
Author(s): Marta S. Shocket, Anna B Verwillow, Mailo G Numazu, Hani Slamani, Jeremy M. Cohen, Fadoua El Moustaid, Jason R. Rohr, Leah R. Johnson, Erin A. Mordecai
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.19406

Modeling susceptibility to drug-induced long QT with a panel of subject-specific induced pluripotent stem cells
Cited by: 79
Author(s): Francesca Stillitano, Jens Hansen, Chi-Wing Kong, Ioannis Karakikes, Christian Funck‐Brentano, Lin Geng, Stuart A. Scott, Stephan Reynier, Wu Ma, Yannick Valogne, Carole Desseaux, Joe‐Elie Salem, Dorota Jeziorowska, Noël Zahr, Ronald Li, Ravi Iyengar, Roger J. Hajjar, Jean‐Sébastien Hulot
Software Mentions: 4
Published: over 9 years ago

10.3389/fnhum.2021.622224

Predicting Student Performance Using Machine Learning in fNIRS Data
Cited by: 10
Author(s): Amanda Yumi Ambriola Oku, João Ricardo Sato
Software Mentions: 4
Published: over 5 years ago

10.1186/s13643-021-01760-z

Metabolic side effects of antipsychotic drugs in individuals with schizophrenia during medium- to long-term treatment: protocol for a systematic review and network meta-analysis of randomized controlled trials
Cited by: 3
Author(s): Johannes Schneider‐Thoma, Angelika Burschinski, Dongfang Wang, Irene Bighelli, Spyridon Siafis, Hui Wang, Wulf–Peter Hansen, John M. Davis, Georgia Salanti, Stefan Leucht
Software Mentions: 4
Published: about 5 years ago

10.1007/s00701-021-04794-3

Radiotherapy versus combination radiotherapy-bevacizumab for the treatment of recurrent high-grade glioma: a systematic review
Cited by: 17
Author(s): Daniel Kulinich, John P. Sheppard, Thien Nguyen, Aditya Kondajji, Ansley Unterberger, Courtney Duong, Adam Enomoto, Kunal Patel, Isaac Yang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-44492-w

Biological effects 26 years after simulated deep-sea mining
Cited by: 74
Author(s): Erik Simon-Lledó, Brian J. Bett, Veerle A.I. Huvenne, Kevin Köser, Timm Schoening, Jens Greinert, Daniel O. B. Jones
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-45663-5

Biological parameters, life table and thermal requirements of Thaumastocoris peregrinus (Heteroptera: Thaumastocoridae) at different temperatures
Cited by: 17
Author(s): L. R. Barbosa, Francielli Weber Santos, Everton Pires Soliman, Aline Rodrigues, Carlos Frederico Wilcken, Juliana Mendonça Campos, Antônio José Vinha Zanuncio, José Cola Zanúncio
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.65948

Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments
Cited by: 42
Author(s): Sylvie Estrela, Alicia Sánchez-Gorostiaga, Jean C. C. Vila, Álvaro Sánchez
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giy125

A benchmark study of k-mer counting methods for high-throughput sequencing
Cited by: 43
Author(s): Swati Manekar, S. R. Sathe
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0182539

Disentangling the influence of environmental and anthropogenic factors on the distribution of endemic vascular plants in Sardinia
Cited by: 27
Author(s): Mauro Fois, Giuseppe Fenu, Eva M. Cañadas, Gianluigi Bacchetta
Software Mentions: 4
Published: about 9 years ago

10.1016/j.vaccine.2016.08.015

Distribution of Bexsero® Antigen Sequence Types (BASTs) in invasive meningococcal disease isolates: Implications for immunisation
Cited by: 62
Author(s): Carina Brehony, Charlene Rodrigues, Raymond Borrow, Andrew Smith, Robert Cunney, E. Richard Moxon, Martin C. J. Maiden
Software Mentions: 4
Published: almost 10 years ago

10.1186/s43019-020-00086-9

A systematic review comparing the results of early vs delayed ligament surgeries in single anterior cruciate ligament and multiligament knee injuries
Cited by: 28
Author(s): Seong Hwan Kim, Sang-Wook Han, Yong Bum Park, Dong-Hyun Kim, Han-Jun Lee, Nicolas Pujol
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-61900-8

Milk yield, milk composition, and milk metabolomics of dairy goats intramammary-challenged with lipopolysaccharide under heat stress conditions
Cited by: 19
Author(s): A. A. K. Salama, Alexandra Contreras-Jodar, Samantha Love, Nabil Mehaba, X. Such, G. Caja
Software Mentions: 4
Published: over 6 years ago

10.1111/mec.15635

On the way to specificity ‐ Microbiome reflects sponge genetic cluster primarily in highly structured populations
Cited by: 17
Author(s): Cristina Díez‐Vives, Sergi Taboada, Carlos Leiva, Kathrin Busch, Ute Hentschel, Ana Riesgo
Software Mentions: 4
Published: almost 6 years ago

10.1002/brb3.1468

Remediating reduced memory specificity in bipolar disorder: A case study using a Computerized Memory Specificity Training
Cited by: 3
Author(s): Kris M. Martens, Keisuke Takano, Tom J. Barry, Emily A. Holmes, Sabine Wyckaert, Filip Raes
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-89364-4

Diversification of the Balloon bushcrickets (Orthoptera, Hexacentrinae, Aerotegmina) in the East African mountains
Cited by: 3
Author(s): Beata Grzywacz, Elżbieta Warchałowska‐Śliwa, Maciej Kociński, Klaus‐Gerhard Heller, Claudia Hemp
Software Mentions: 4
Published: about 5 years ago

10.1111/jne.12920

Activation and expression of endogenous CREB‐regulated transcription coactivators (CRTC) 1, 2 and 3 in the rat adrenal gland
Cited by: 3
Author(s): Lorna Smith, Zidong Zhao, Jamie J. Walker, Stafford L. Lightman, Francesca Spiga
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2018.01129

Carbon Gain Limitation Is the Primary Mechanism for the Elevational Distribution Limit of Myriophyllum in the High-Altitude Plateau
Cited by: 1
Author(s): Dong Xie, Zhigang Wu, Han Y. H. Chen, Wang Zhong, Qiang Wang, Dan Yu
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pcbi.1006844

A new clustering and nomenclature for beta turns derived from high-resolution protein structures
Cited by: 50
Author(s): Maxim V. Shapovalov, Slobodan Vučetić, Roland L. Dunbrack
Software Mentions: 4
Published: over 7 years ago

10.1128/mBio.02262-18

Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role
Cited by: 13
Author(s): Jolene R. Bowers, Michael Valentine, Veronica Harrison, Viacheslav Y. Fofanov, John D. Gillece, Josie Delisle, Bethany K. Patton, James M. Schupp, Krystal Sheridan, Darrin Lemmer, Scott Ostdiek, Harlori K. Bains, Jennifer Heim, Tammy Sylvester, Siru Prasai, Melissa Kretschmer, Nicole Fowle, Kenneth Komatsu, Shane Brady, Susan Robinson, Kathryn Fitzpatrick, Gholamabbas Amin Ostovar, Eric Alsop, Elizabeth Hutchins, Kendall Jensen, Paul Keim, David M. Engelthaler
Software Mentions: 4
Published: over 7 years ago

10.1007/s11336-021-09751-8

Single- and Multiple-Group Penalized Factor Analysis: A Trust-Region Algorithm Approach with Integrated Automatic Multiple Tuning Parameter Selection
Cited by: 10
Author(s): Elena Geminiani, Giampiero Marra, Irini Moustaki
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0127819

Selection for Growth Performance in Broiler Chickens Associates with Less Diet Flexibility
Cited by: 9
Author(s): Jana Pauwels, Frank Coopman, An Cools, Joris Michiels, Dirk Fremaut, Stefaan De Smet, Geert Janssens
Software Mentions: 4
Published: about 11 years ago

10.1136/jclinpath-2019-206300

Prognostic value of perineural invasion in prostate needle biopsies: a population-based study of patients treated by radical prostatectomy
Cited by: 8
Author(s): Peter Ström, Tobias Nordström, Brett Delahunt, Hema Samaratunga, Henrik Grönberg, Lars Egevad, Martin Eklund
Software Mentions: 4
Published: over 6 years ago

10.3390/pathogens10020243

Non-Invasive Molecular Survey of Sarcoptic Mange in Wildlife: Diagnostic Performance in Wolf Faecal Samples Evaluated by Multi-Event Capture–Recapture Models
Cited by: 4
Author(s): J. Rousseau, Mónia Nakamura, Helena Rio-Maior, Francisco Álvares, Rémi Choquet, Luís Madeira de Carvalho, Raquel Godinho, Nuno Santos
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.7108

Development of a metabolites risk score for one-year mortality risk prediction in pancreatic adenocarcinoma patients
Cited by: 17
Author(s): Andrea Fontana, Massimiliano Copetti, Iole Maria Di Gangi, Tommaso Mazza, Francesca Tavano, Domenica Gioffreda, Fulvio Mattivi, Angelo Andriulli, Urška Vrhovšek, Valerio Pazienza
Software Mentions: 4
Published: over 10 years ago

10.1186/s12866-019-1519-2

Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study
Cited by: 16
Author(s): Shirin Moossavi, Phillip A. Engen, Reza Ghanbari, Stefan J. Green, Ankur Naqib, Faraz Bishehsari, Shahin Merat, Hossein Poustchi, Ali Keshavarzian, Reza Malekzadeh
Software Mentions: 4
Published: about 7 years ago

10.1111/jth.13613

Clustering of glycoprotein VI (GPVI) dimers upon adhesion to collagen as a mechanism to regulate GPVI signaling in platelets
Cited by: 82
Author(s): Natalie S. Poulter, Alice Y. Pollitt, Dylan M. Owen, Elizabeth E. Gardiner, Robert K. Andrews, Hiroyuki Shimizu, Daisuke Ishikawa, Dominique Bihan, Richard W. Farndale, Masaaki Moroi, Steve P. Watson, Stéphanie Jung
Software Mentions: 4
Published: over 9 years ago

10.3390/ph14070602

CPPs to the Test: Effects on Binding, Uptake and Biodistribution of a Tumor Targeting Nanobody
Cited by: 8
Author(s): Estel Collado Camps, Sanne A. M. van Lith, Cathelijne Frielink, Jordi Lankhof, Ingrid Dijkgraaf, Martin Gotthardt, Roland Brock
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-94934-7

Prevalence of human T-lymphotropic virus type 1 and 2 (HTLV-1/-2) infection in pregnant women in Brazil: a systematic review and meta-analysis
Cited by: 6
Author(s): Bruna Angelo Vieira, Augusto Bacelo Bidinotto, William Jones Dartora, Luana Giongo Pedrotti, Vanessa Martins de Oliveira, Eliana Márcia Wendland
Software Mentions: 4
Published: about 5 years ago

10.3390/ani10101874

Specialised for the Swamp, Catered for in Captivity? A Cross-Institutional Evaluation of Captive Husbandry for Two Species of Lechwe
Cited by: 1
Author(s): Paul Rose, Lewis J. Rowden
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-12-468

openBIS: a flexible framework for managing and analyzing complex data in biology research
Cited by: 105
Author(s): Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn
Software Mentions: 4
Published: over 14 years ago

10.1186/s13018-021-02315-7

Comparison of short-term outcomes between direct anterior approach (DAA) and SuperPATH in total hip replacement: a systematic review and network meta-analysis of randomized controlled trials
Cited by: 9
Author(s): Nikolai Ramadanov, Simon Bueschges, Kuiliang Liu, Philip Lazaru, Ivan Marintschev
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008358

Multi-omics analysis identifies mitochondrial pathways associated with anxiety-related behavior
Cited by: 34
Author(s): R. Zuzanna Misiewicz, Stella Iurato, Natalia Kulesskaya, Laura Salminen, Luís Filipe Rodrigues, Giuseppina Maccarrone, Jade Martins, Darina Czamara, Mikaela Laine, Ewa Sokołowska, Kalevi Trontti, Christiane Rewerts, Božidar Novak, Naama Volk, Dong Ik Park, Eija Jokitalo, Lars Paulín, Petri Auvinen, Vootele Võikar, Alon Chen, Angelika Erhardt, Christoph W. Turck, Iiris Hovatta
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13756-020-00863-x

Evaluation of the health and healthcare system burden due to antimicrobial-resistant Escherichia coli infections in humans: a systematic review and meta-analysis
Cited by: 24
Author(s): Melissa C. MacKinnon, Jan M. Sargeant, David L. Pearl, Richard J. Reid‐Smith, Carolee A. Carson, E. Jane Parmley, Scott A. McEwen
Software Mentions: 4
Published: over 5 years ago

10.1093/bioinformatics/bty157

Integrating long-range connectivity information into de Bruijn graphs
Cited by: 56
Author(s): Isaac Turner, Kiran Garimella, Zamin Iqbal, Gil McVean
Software Mentions: 4
Published: over 8 years ago

10.3389/fmolb.2021.720561

Exploring Ligand Binding to Calcitonin Gene-Related Peptide Receptors
Cited by: 5
Author(s): Giuseppe Deganutti, Silvia Atanasio, Roxana Maria Rujan, Patrick M. Sexton, Denise Wootten, Christopher A. Reynolds
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13018-020-01884-3

Comparison of short-term outcomes between SuperPATH approach and conventional approaches in hip replacement: a systematic review and meta-analysis of randomized controlled trials
Cited by: 14
Author(s): Nikolai Ramadanov, Simon Bueschges, Kuiliang Liu, Roman Klein, Ruediger Schultka
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13073-020-00740-7

Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues
Cited by: 24
Author(s): Jean-David Larouche, Assya Trofimov, Leslie Hesnard, Grégory Ehx, Qingchuan Zhao, Krystel Vincent, Chantal Durette, Patrick Gendron, Jean‐Philippe Laverdure, Éric Bonneil, Caroline Côté, Sébastien Lemieux, Pierre Thibault, Claude Perreault
Software Mentions: 4
Published: over 6 years ago

10.1007/s00018-017-2695-6

Downregulation of p53 drives autophagy during human trophoblast differentiation
Cited by: 23
Author(s): Martin Gauster, Sabine Maninger, Monika Siwetz, Alexander Deutsch, Amin El‐Heliebi, Dagmar Kolb-Lenz, Ursula Hiden, Gernot Desoyé, Florian Herse, Andreas Prokesch
Software Mentions: 4
Published: almost 9 years ago

10.15252/msb.20167233

A method for high‐throughput production of sequence‐verified <scp>DNA</scp> libraries and strain collections
Cited by: 36
Author(s): Justin D. Smith, Ulrich Schlecht, Weihong Xu, Sundari Suresh, Joe Horecka, Michael Proctor, Raeka S. Aiyar, Richard A. O. Bennett, Angela M. Chu, Yong Fuga Li, Kevin Roy, Ronald W. Davis, Lars M. Steinmetz, Richard W. Hyman, Sasha F. Levy, Robert P. St.Onge
Software Mentions: 4
Published: over 9 years ago

10.3390/jpm11050429

Effectiveness of Cognitive Rehabilitation in Parkinson’s Disease: A Systematic Review and Meta-Analysis
Cited by: 9
Author(s): Itsasne Sanchez-Luengos, Yolanda Balboa-Bandeira, Olaia Lucas‐Jiménez, Natalia Ojeda, Javier Peña, Naroa Ibarretxe‐Bilbao
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph18042186

Psychological Impact of Pro-Anorexia and Pro-Eating Disorder Websites on Adolescent Females: A Systematic Review
Cited by: 14
Author(s): Carmela Mento, Maria Catena Silvestri, Maria Rosaria Anna Muscatello, Amelia Rizzo, Laura Celebre, Martina Praticò, Rocco Antonio Zoccali, Antonio Bruno
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-2676-x

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Cited by: 5
Author(s): Taewoon Joo, Ji-Hye Choi, Jihye Lee, So Eun Park, Youngsic Jeon, Sae Hoon Jung, Hyun Goo Woo
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms19092500

Co-Expression Network Analysis Identifies miRNA–mRNA Networks Potentially Regulating Milk Traits and Blood Metabolites
Cited by: 12
Author(s): Adolf A. Ammah, Duy Ngoc, Nathalie Bissonnette, Nicolas Gévry, Eveline M. Ibeagha‐Awemu
Software Mentions: 4
Published: almost 8 years ago

10.1111/mec.15401

Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent
Cited by: 34
Author(s): Anna Tigano, Jocelyn P. Colella, Matthew D. MacManes
Software Mentions: 4
Published: over 6 years ago

10.1111/ejn.12331

<scp>GABA_A</scp>receptors can initiate the formation of functional inhibitory<scp>GABA</scp>ergic synapses
Cited by: 33
Author(s): Céline Fuchs, Karine Abitbol, Jemima J. Burden, Audrey Mercer, Laura E. Brown, Jonathan Iball, F. Anne Stephenson, Alex M. Thomson, Jasmina N. Jovanovic
Software Mentions: 4
Published: about 13 years ago

10.1186/s12876-021-01663-2

Endoscopic transmural drainage is associated with improved outcomes in disconnected pancreatic duct syndrome: a systematic review and meta-analysis
Cited by: 13
Author(s): Eric Chong, Bathiya Ratnayake, Samantha Saikia, Manu Nayar, Kofi Oppong, Jeremy French, John A. Windsor, Sanjay Pandanaboyana
Software Mentions: 4
Published: over 5 years ago

10.1093/molbev/msaa222

Log Transformation Improves Dating of Phylogenies
Cited by: 4
Author(s): Uyen Mai, Siavash Mirarab
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.41770

The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders
Cited by: 51
Author(s): Cheen Euong Ang, Qing Ma, Orly L. Wapinski, Sheng Hua Fan, Ryan A. Flynn, Qian Yi Lee, Bradley P. Coe, Masahiro Onoguchi, Victor Hipolito Olmos, T. Brian, Lynn Dukes-Rimsky, Jin Xu, Koji Tanabe, Liang Jiang Wang, Ulrich Elling, Josef Penninger, Yang Zhao, Kun Qu, Evan E. Eichler, Anand Srivastava, Marius Wernig, Howard Y. Chang
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0225650

Are viral-infections associated with Ménière’s Disease? A systematic review and meta-analysis of molecular-markers of viral-infection in case-controlled observational studies of MD
Cited by: 11
Author(s): Nicholas John Dean, Christopher J. Pastras, Daniel Brown, Aaron J. Camp
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008908

An expanded cell wall damage signaling network is comprised of the transcription factors Rlm1 and Sko1 in Candida albicans
Cited by: 19
Author(s): Marienela Y. Heredia, Mélanie Ikeh, Deepika Gunasekaran, Karen A. Conrad, Sviatlana Filimonava, Dawn H. Marotta, Clarissa J. Nobile, Jason M. Rauceo
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-14-326

snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing
Cited by: 6
Author(s): Ali Al‐Shahib, Anthony Underwood
Software Mentions: 4
Published: over 12 years ago

10.3389/fnut.2020.00150

High-Resolution Mass Spectrometer–Based Ultra-Deep Profile of Milk Whey Proteome in Indian Zebu (Sahiwal) Cattle
Cited by: 17
Author(s): Alka Chopra, Syed Azmal Ali, Shveta Bathla, Preeti Rawat, Vikas Vohra, Sudarshan Kumar, Ashok Kumar Mohanty
Software Mentions: 4
Published: almost 6 years ago

10.1007/s11060-017-2649-8

Local alkylating chemotherapy applied immediately after 5-ALA guided resection of glioblastoma does not provide additional benefit
Cited by: 20
Author(s): William Sage, Mathew R. Guilfoyle, Catriona Luney, Adam M. H. Young, Rohitashwa Sinha, Donatella Sgubin, Joseph H. McAbee, Roy Ma, Sarah Jefferies, R. Jena, Frances Harris, Kieren Allinson, Tomasz Matys, Wendi Qian, Thomas Santarius, Stephen J. Price, Colin Watts
Software Mentions: 4
Published: over 8 years ago

10.1155/2020/6248686

PmDNE: Prediction of miRNA-Disease Association Based on Network Embedding and Network Similarity Analysis
Cited by: 2
Author(s): Junyi Li, Ying Liu, Zhongqing Zhang, Bo Liu, Yadong Wang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-23462-8

Knowledge and self-reported practices of infection control among various occupational groups in a rural and an urban hospital in Vietnam
Cited by: 12
Author(s): La Thi Quynh Lien, Nguyễn Thị Kim Chúc, Nguyen Quynh Hoa, Phạm Thị Lan, Nguyen Thi Minh Thoa, Emilia Riggi, Ashok J. Tamhankar, Cecilia Stålsby Lundborg
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1000456

Rapid and Accurate Multiple Testing Correction and Power Estimation for Millions of Correlated Markers
Cited by: 170
Author(s): Buhm Han, Hyun Min Kang, Eleazar Eskin
Software Mentions: 4
Published: over 17 years ago

10.1080/21505594.2021.1948252

Suppressed inflammation in obese children induced by a high-fiber diet is associated with the attenuation of gut microbial virulence factor genes
Cited by: 5
Author(s): Hui Li, Guojun Wu, Liping Zhao, Menghui Zhang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1008955

Computational phenotyping of brain-behavior dynamics underlying approach-avoidance conflict in major depressive disorder
Cited by: 12
Author(s): Mads Lund Pedersen, Maria Ironside, Ken‐ichi Amemori, Callie L. McGrath, Min Su Kang, Ann M. Graybiel, Diego A. Pizzagalli, Michael J. Frank
Software Mentions: 4
Published: about 5 years ago

10.1038/s41597-019-0070-1

Inter-urban mobility via cellular position tracking in the southeast Songliao Basin, Northeast China
Cited by: 8
Author(s): Zhanwei Du, Yintang Yang, Zeynep Ertem, Chao Gao, Liping Huang, Qiuyang Huang, Yuan Bai
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-019-3180-z

DEEPSEN: a convolutional neural network based method for super-enhancer prediction
Cited by: 13
Author(s): Hongda Bu, Jiaqi Hao, Yanglan Gan, Shuigeng Zhou, Jihong Guan
Software Mentions: 4
Published: over 6 years ago

10.3390/cells8121566

Stromal Cell Signature Associated with Response to Neoadjuvant Chemotherapy in Locally Advanced Breast Cancer
Cited by: 20
Author(s): Maria Lúcia Hirata Katayama, René Aloísio da Costa Vieira, Victor Piana de Andrade, Rosimeire Aparecida Roela, Luciana Lima, Lígia Maria Kerr, Adriano Polpo de Campos, Carlos Alberto Pereira, Pedro Adolpho de Menezes Pacheco Serio, Giselly Encinas, Simone Maistro, Matheus de Almeida Leite Petroni, Maria Mitzi Brentani, Maria Aparecida Azevedo Koike Folgueira
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyt.2020.00583

Bed-Sharing in Couples Is Associated With Increased and Stabilized REM Sleep and Sleep-Stage Synchronization
Cited by: 20
Author(s): Henning Johannes Drews, Sebastian Wallot, Philip Brysch, Hannah Berger-Johannsen, Sara Lena Weinhold, Panagiotis Mitkidis, Paul Christian Baier, Julia Lechinger, Andreas Roepstorff, Robert Göder
Software Mentions: 4
Published: about 6 years ago

10.3390/nu11112657

Enteral Nutrition in Patients with Inflammatory Bowel Disease. Systematic Review, Meta-Analysis, and Meta-Regression
Cited by: 19
Author(s): Jose Miguel Comeche, Pablo Caballero, Ana Gutiérrez-Hervás, Sofía García-Sanjuán, Iris Comino, Cesare Altavilla, José Tuells
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2164-13-131

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
Cited by: 31
Author(s): Elena S. Peterson, Lee Ann McCue, Alexandra C. Schrimpe‐Rutledge, Jeffrey L. Jensen, Hyunjoo Walker, Markus A. Kobold, Samantha R Webb, Samuel H. Payne, Charles Ansong, Joshua N. Adkins, W. Roger Cannon, Bobbie-Jo M. Webb-Robertson
Software Mentions: 4
Published: over 14 years ago

10.1186/s12864-015-1374-y

Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals
Cited by: 29
Author(s): Vincent A. Streva, Vallmer E Jordan, Sara B. Linker, Dale J. Hedges, Prescott L. Deininger
Software Mentions: 4
Published: over 11 years ago

10.3389/fgene.2020.564839

FI-Net: Identification of Cancer Driver Genes by Using Functional Impact Prediction Neural Network
Cited by: 6
Author(s): Hong Gu, Xin Xu, Pan Qin, Jia Wang
Software Mentions: 4
Published: over 5 years ago