10.1186/s13722-021-00231-z

Alcohol consumption and dependence is linked to the extent that people experience need satisfaction while drinking alcohol in two Aboriginal and Torres Strait Islander communities
Cited by: 5
Author(s): James H. Conigrave, Emma L. Bradshaw, Katherine M. Conigrave, Richard M. Ryan, Scott Wilson, Jimmy Perry, Michael Doyle, K. S. Kylie Lee
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-12-136

ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
Cited by: 2
Author(s): Chris Overall, Denis Carr, Ehsan Tabari, Kevin J. Thompson, Juliane Weller
Software Mentions: 4
Published: about 15 years ago

10.1186/s12864-021-07432-5

Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus
Cited by: 12
Author(s): Yisong Li, Zhuo Sun, Jin-Cheng Rong, Bin-Bin Xie
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01192

Comparative Genomic Analysis Reveals the Metabolism and Evolution of the Thermophilic Archaeal Genus Metallosphaera
Cited by: 7
Author(s): Pei Wang, Liang Zhi Li, Yipeng Qin, Zong Lin Liang, Xiu Tong Li, Hua Yin, Li Jun Liu, Shuang‐Jiang Liu, Cheng‐Ying Jiang
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.683814

Comparative Genomic Insights Into the Taxonomic Classification, Diversity, and Secondary Metabolic Potentials of Kitasatospora, a Genus Closely Related to Streptomyces
Cited by: 10
Author(s): Yisong Li, Meng Wang, Zhuo Sun, Bin-Bin Xie
Software Mentions: 4
Published: about 5 years ago

10.1186/s12936-019-2687-0

Impact of sunlight exposure on the residual efficacy of biolarvicides Bacillus thuringiensis israelensis and Bacillus sphaericus against the main malaria vector, Anopheles gambiae
Cited by: 13
Author(s): Barnabas Zogo, Bertin N’Cho Tchiekoi, Alphonsine A. Koffi, Amal Dahounto, Ludovic P. Ahoua Alou, Roch K. Dabiré, Lamine Baba-Moussa, Nicolas Moiroux, Cédric Pennetier
Software Mentions: 4
Published: over 7 years ago

10.1098/rstb.2015.0212

Ochre star mortality during the 2014 wasting disease epizootic: role of population size structure and temperature
Cited by: 100
Author(s): Morgan E. Eisenlord, Maya L. Groner, Reyn Yoshioka, Joel K. Elliott, Jeffrey Maynard, Steven C. Fradkin, Margaret Turner, Katie Pyne, Natalie Rivlin, Ruben van Hooidonk, C. Drew Harvell
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1006314

Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and Mortality
Cited by: 26
Author(s): Alexander M. Kulminski, Liyun He, Irina Culminskaya, Yury Loika, Yelena Kernogitski, Konstantin G. Arbeev, Elena Loiko, Liubov Arbeeva, Olivia Bagley, Matt Duan, Arseniy Yashkin, Fang Fang, Mikhail Kovtun, Svetlana V. Ukraintseva, Deqing Wu, Anatoliy I. Yashin
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0256147

Reactive anti-predator behavioral strategy shaped by predator characteristics
Cited by: 9
Author(s): Meredith S. Palmer, Craig Packer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0185848

Impact of social inequalities at birth on the longevity of children born 1914–1916: A cohort study
Cited by: 3
Author(s): Nicolas Todd, Sophie Le Fur, Pierre Bougnères, Alain‐Jacques Valleron
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0061919

Use of Exposure History to Identify Patterns of Immunity to Pneumonia in Bighorn Sheep (Ovis canadensis)
Cited by: 31
Author(s): Raina K. Plowright, Kezia R. Manlove, E. Frances Cassirer, Paul C. Cross, Thomas E. Besser, Peter J. Hudson
Software Mentions: 4
Published: over 13 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.1097/CCM.0000000000004747

Improving Survival of Critical Care Patients With Coronavirus Disease 2019 in England: A National Cohort Study, March to June 2020*
Cited by: 155
Author(s): John Dennis, Andrew McGovern, Sebastian J. Vollmer, Bilal A. Mateen
Software Mentions: 4
Published: almost 6 years ago

10.1002/eap.1667

Seed dispersal as an ecosystem service: frugivore loss leads to decline of a socially valued plant,<i>Capsicum frutescens</i>
Cited by: 27
Author(s): Monika Egerer, Evan C. Fricke, Haldre S. Rogers
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4599

Embryonal life histories: Desiccation plasticity and diapause in the Argentinean pearlfish<i>Austrolebias bellottii</i>
Cited by: 6
Author(s): Tom J. M. Van Dooren, Irma Varela-Lasheras
Software Mentions: 4
Published: over 7 years ago

10.1007/s10493-020-00500-7

High-quality alternative food reduces cannibalism in the predatory mite Amblyseius herbicolus (Acari: Phytoseiidae)
Cited by: 12
Author(s): Ítalo Marcossi, Morgana Maria Fonseca, Paola A. F. Carbajal, André C. Cardoso, Ângelo Pallini, Arne Janssen
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2014.00576

In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors
Cited by: 65
Author(s): Peter D. Newell, John M. Chaston, Yiping Wang, Nathan J. Winans, David R. Sannino, Adam C. N. Wong, A. Dobson, Jeanne Kagle, Angela E. Douglas
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-020-71905-y

Whole transcriptome approach to evaluate the effect of aluminium hydroxide in ovine encephalon
Cited by: 9
Author(s): Endika Varela-Martínez, Martin Bilbao‐Arribas, Naiara Abendaño, Javier Asín, Marta Pérez, Damián F. de Andrés, Lluís Luján, Begoña M. Jugo
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80635-0

Differentially expressed lncRNAs in liver tissues of TX mice with hepatolenticular degeneration
Cited by: 5
Author(s): Juan Zhang, Ying Ma, Denghui Xie, Bao Yuan-cheng, Weiren Yang, Han Wang, Huaizhou Jiang, Hui Han, Ting Dong
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.25607

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation
Cited by: 47
Author(s): M. Joaquina Delás, Leah R. Sabin, Egor Dolzhenko, Simon Knott, Ester Munera Maravilla, Benjamin T. Jackson, Sophia A Wild, Tatjana Kovačević, Eva Maria Stork, Meng Zhou, Nicolas Erard, Emily Lee, David R. Kelley, Mareike Roth, Inês Barbosa, Johannes Zuber, John L. Rinn, Andrew D. Smith, Gregory J. Hannon
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms20051182

Temporal Splicing Switches in Elements of the TNF-Pathway Identified by Computational Analysis of Transcriptome Data for Human Cell Lines
Cited by: 6
Author(s): Nikolaï Genov, Alireza Basti, Marconi Abreu, Angela Relógio
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21062079

Whole-Genome Uterine Artery Transcriptome Profiling and Alternative Splicing Analysis in Rat Pregnancy
Cited by: 4
Author(s): Kathirvel Gopalakrishnan, Sathish Kumar
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1007139

An efficient Bayesian meta-analysis approach for studying cross-phenotype genetic associations
Cited by: 40
Author(s): Årindam Majumdar, Tanushree Haldar, Sourabh Bhattacharya, John S. Witte
Software Mentions: 4
Published: over 8 years ago

10.1038/s41597-020-00792-9

A gridded establishment dataset as a proxy for economic activity in China
Cited by: 14
Author(s): Lei Dong, Xiaohui Yuan, Meng Li, Carlo Ratti, Yu Liu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13637-016-0044-y

A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB
Cited by: 2
Author(s): Shriprakash Sinha
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12859-019-2804-7

pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)
Cited by: 40
Author(s): Stefan Graw, Rosalyn Henn, Jeffrey Thompson, Devin C. Koestler
Software Mentions: 4
Published: over 7 years ago

10.1186/s13073-018-0575-9

Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins
Cited by: 60
Author(s): Amy P Webster, Darren Plant, Simone Ecker, Flore Zufferey, Jordana T. Bell, Andrew Feber, Dirk S. Paul, Stephan Beck, Anne Barton, Frances Williams, Jane Worthington
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-02810-0

Cumulative impacts: thermally bleached corals have reduced capacity to clear deposited sediment
Cited by: 29
Author(s): Pia Bessell-Browne, Andrew P. Negri, Rebecca Fisher, Peta L. Clode, Ross Jones
Software Mentions: 4
Published: about 9 years ago

10.1098/rsif.2017.0213

The coefficient of determination <i>R</i> ² and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded
Cited by: 1,451
Author(s): Shinichi Nakagawa, Paul C. D. Johnson, Holger Schielzeth
Software Mentions: 4
Published: almost 9 years ago

10.15252/msb.20166869

Strand‐specific, high‐resolution mapping of modified RNA polymerase II
Cited by: 46
Author(s): Laura Milligan, Vân Anh Huynh-Thu, Clémentine Delan-Forino, Alex Tuck, Elisabeth Petfalski, Rodrigo Lombraña, Guido Sanguinetti, Grzegorz Kudla, David Tollervey
Software Mentions: 4
Published: about 10 years ago

10.12688/f1000research.19426.1

Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Cited by: 2
Author(s): Andrian Yang, Jiangjun Tang, Michael Troup, Joshua W. K. Ho
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-40127-2

Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis
Cited by: 7
Author(s): Elisavet Kaitetzidou, Ioanna Katsiadaki, Jacques Lagnel, Efthimia Antonopoulou, Elena Sarropoulou
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.6509

cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer
Cited by: 1
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 4
Published: over 7 years ago

10.1186/s13326-015-0026-0

Ambiguity and variability of database and software names in bioinformatics
Cited by: 8
Author(s): Geraint Duck, Aleksandar Kovačević, David L. Robertson, Robert Stevens, Goran Nenadić
Software Mentions: 4
Published: about 11 years ago

10.1186/s13321-018-0327-2

LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Cited by: 29
Author(s): Wahed Hemati, Alexander Mehler
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms19092483

IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields
Cited by: 18
Author(s): Yumeng Liu, Xiaolong Wang, Bin Liu
Software Mentions: 4
Published: almost 8 years ago

10.3390/s21124002

OPAL—The Toolbox for the Integration and Analysis of IoT in a Semantically Annotated Way
Cited by: 0
Author(s): Philipp Hertweck, Tobias Hellmund, Jürgen Moßgraber
Software Mentions: 4
Published: about 5 years ago

10.1186/s12969-020-00480-3

Onset age is a risk factor for refractory pediatric IgA vasculitis: a retrospective cohort study
Cited by: 9
Author(s): Calvin C.Y. Liao, Ming-Hsien Tsai, Yao‐Hsu Yang, Bor‐Luen Chiang, Li‐Chieh Wang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12874-019-0738-4

A novel approach to determine two optimal cut-points of a continuous predictor with a U-shaped relationship to hazard ratio in survival data: simulation and application
Cited by: 17
Author(s): Yimin Chen, Jialing Huang, Xianying He, Yongxiang Gao, Gehendra Mahara, Zhongqiu Lin, Jinxin Zhang
Software Mentions: 4
Published: about 7 years ago

10.3389/fdata.2021.672460

Comprehensive Data Integration Approach to Assess Immune Responses and Correlates of RTS,S/AS01-Mediated Protection From Malaria Infection in Controlled Human Malaria Infection Trials
Cited by: 5
Author(s): William Chad Young, Lindsay N. Carpp, Sidhartha Chaudhury, Jason A. Regules, Elke S. Bergmann‐Leitner, Christian F. Ockenhouse, Ulrike Wille-Reece, Allan C. deCamp, Ellis Hughes, Celia Mahoney, Suresh Pallikkuth, Savita Pahwa, S. Moses Dennison, Sarah V. Mudrak, S. Munir Alam, Kelly E. Seaton, Rachel L. Spreng, Jon Fallon, Ashlin Michell, Fernando Ulloa‐Montoya, Margherita Coccia, Erik Jongert, Galit Alter, Georgia D. Tomaras, Raphaël Gottardo
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-46187-8

Visceral adiposity index (VAI), lipid accumulation product (LAP), and product of triglycerides and glucose (TyG) to discriminate prediabetes and diabetes
Cited by: 78
Author(s): Nayeon Ahn, Sebastian E. Baumeister, Ute Amann, Wolfgang Rathmann, Annette Peters, Cornelia Huth, Barbara Thorand, Christa Meisinger
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2021.552331

Computational Tumor Infiltration Phenotypes Enable the Spatial and Genomic Analysis of Immune Infiltration in Colorectal Cancer
Cited by: 1
Author(s): Henrik Failmezger, Natalie Zwing, Achim Tresch, Konstanty Korski, Fabian Schmich
Software Mentions: 4
Published: over 5 years ago

10.1002/advs.201902862

Gut Microbial Signatures Can Discriminate Unipolar from Bipolar Depression
Cited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.101170

Metabolomic signature associated with reproduction-regulated aging in Caenorhabditis elegans
Cited by: 39
Author(s): Qin-Li Wan, Xiaohuo Shi, Jiangxin Liu, Aijun Ding, Yuan-Zhu Pu, Zhigang Li, Gui-Sheng Wu, Huai‐Rong Luo
Software Mentions: 4
Published: over 9 years ago

10.3390/ani11041024

Effects of Dietary Protein Level on the Gut Microbiome and Nutrient Metabolism in Tilapia (Oreochromis niloticus)
Cited by: 20
Author(s): Changgeng Yang, Ming Jiang, Xin Lü, Wen Huang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0124467

A Four-Compartment Metabolomics Analysis of the Liver, Muscle, Serum, and Urine Response to Polytrauma with Hemorrhagic Shock following Carbohydrate Prefeed
Cited by: 15
Author(s): Nancy E. Witowski, Elizabeth R. Lusczek, Charles Determan, Daniel R. Lexcen, Kristine E. Mulier, Beverly Gaul Ostrowski, Greg J. Beilman
Software Mentions: 4
Published: over 11 years ago

10.3389/fmicb.2018.03203

Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity
Cited by: 61
Author(s): Nicola Vitulo, Wilson José Fernandes Lemos, Matteo Calgaro, Marco Confalone, Giovanna E. Felis, Giacomo Zapparoli, Tiziana Nardi
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21124470

Differences between Well-Differentiated Neuroendocrine Tumors and Ductal Adenocarcinomas of the Pancreas Assessed by Multi-Omics Profiling
Cited by: 8
Author(s): Teresa Starzyńska, Jakub Karczmarski, Agnieszka Paziewska, Maria Kulecka, Katarzyna Kuśnierz, Natalia Żeber‐Lubecka, Filip Ambrożkiewicz, Michał Mikula, Beata Kos‐Kudła, Jerzy Ostrowski
Software Mentions: 4
Published: about 6 years ago

10.1084/jem.20150907

Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells
Cited by: 76
Author(s): Alejandro V. Villarino, Giuseppe Sciumè, Fred P. Davis, S. Iwata, Beatrice Zitti, Gertraud W. Robinson, Lothar Hennighausen, Yuka Kanno, John J. O’Shea
Software Mentions: 4
Published: almost 9 years ago

10.1038/sdata.2018.292

The metabolic regimes of 356 rivers in the United States
Cited by: 60
Author(s): Alison P. Appling, Jordan S. Read, Luke Winslow, Maite Arroita, Emily S. Bernhardt, Natalie A. Griffiths, Robert O. Hall, Judson W. Harvey, James B. Heffernan, Emily H. Stanley, Edward G. Stets, Charles B. Yackulic
Software Mentions: 4
Published: over 7 years ago

10.1093/infdis/jit494

Ratio of Monocytes to Lymphocytes in Peripheral Blood Identifies Adults at Risk of Incident Tuberculosis Among HIV-Infected Adults Initiating Antiretroviral Therapy
Cited by: 95
Author(s): Vivek Naranbhai, Adrian V. S. Hill, Salim S. Abdool Karim, Kogieleum Naidoo, George M. Warimwe, Helen McShane, Helen A. Fletcher
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0158334

Multivariate and Cladistic Analyses of Isolated Teeth Reveal Sympatry of Theropod Dinosaurs in the Late Jurassic of Northern Germany
Cited by: 36
Author(s): Oliver Gerke, Oliver Wings
Software Mentions: 4
Published: about 10 years ago

10.7717/peerj-cs.321

Big data clustering techniques based on Spark: a literature review
Cited by: 14
Author(s): Mozamel M. Saeed, Zaher Al Aghbari, Mohammed Alsharidah
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02499-y

Modeling the effects of EMT-immune dynamics on carcinoma disease progression
Cited by: 2
Author(s): Daniel Bergman, Matthew Karikomi, Min Yu, Qing Nie, Adam L. MacLean
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.02581

Structural and Functional Characterization of PA14/Flo5-Like Adhesins From Komagataella pastoris
Cited by: 6
Author(s): Michael D. Kock, Stefan Brückner, Nina Wozniak, M. Maestre-Reyna, M. Veelders, Julia Schlereth, Hans‐Ulrich Mösch, Lars‐Oliver Essen
Software Mentions: 4
Published: over 7 years ago

10.3390/s150818613

Scalable and Cost-Effective Assignment of Mobile Crowdsensing Tasks Based on Profiling Trends and Prediction: The ParticipAct Living Lab Experience
Cited by: 28
Author(s): Paolo Bellavista, Antonio Corradi, Luca Foschini, Raffaele Ianniello
Software Mentions: 4
Published: about 11 years ago

10.1186/s12859-018-2150-1

Identification of residue pairing in interacting β-strands from a predicted residue contact map
Cited by: 4
Author(s): Wenzhi Mao, Tong Wang, Wenxuan Zhang, H. Gong
Software Mentions: 4
Published: over 8 years ago

10.1186/1755-8794-7-S1-S5

Derivative component analysis for mass spectral serum proteomic profiles
Cited by: 13
Author(s): Henry Han
Software Mentions: 4
Published: over 12 years ago

10.1002/cam4.3838

A machine learning‐based survival prediction model of high grade glioma by integration of clinical and dose‐volume histogram parameters
Cited by: 8
Author(s): Haiyan Chen, Chao Li, Lin Zheng, Wei Lu, Yanlin Liu, Qichun Wei
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0221350

Prediction of significant prostate cancer in biopsy-naïve men: Validation of a novel risk model combining MRI and clinical parameters and comparison to an ERSPC risk calculator and PI-RADS
Cited by: 12
Author(s): Jan Philipp Radtke, Francesco Giganti, Manuel Wiesenfarth, Armando Stabile, José Luis Marenco, Clément Orczyk, Veeru Kasivisvanathan, Joanne Nyarangi‐Dix, Viktoria Schütz, Svenja Dieffenbacher, Magdalena Görtz, Albrecht Stenzinger, Wilfried Roth, Alex Freeman, Shonit Punwani, David Bonekamp, Heinz Peter Schlemmer, Markus Hohenfellner, Mark Emberton, Caroline M. Moore
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-72035-1

Alteration of salivary microbiome in periodontitis with or without type-2 diabetes mellitus and metformin treatment
Cited by: 43
Author(s): Xiaoyu Sun, Meihui Li, Xia Li, Zhaohui Fang, Yu Shiratsuchi, Jike Gao, Qiang Feng, Pishan Yang
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep27905

A general method for parameter estimation in light-response models
Cited by: 2
Author(s): Lei Chen, Zhongbin Li, Cang Hui, Xiaofei Cheng, Bai-Lian Li, Peijian Shi
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0133439

Spatially Explicit Modeling Reveals Cephalopod Distributions Match Contrasting Trophic Pathways in the Western Mediterranean Sea
Cited by: 25
Author(s): Patricia Puerta, Mary E. Hunsicker, Antoni Quetglas, Diego Álvarez-Berastegui, Antonio Esteban, María Luisa Soriano González, Manuel Hidalgo
Software Mentions: 4
Published: about 11 years ago

10.1186/s12859-016-1245-9

EnsCat: clustering of categorical data via ensembling
Cited by: 3
Author(s): Bertrand Clarke, Saeid Amiri, Jennifer Clarke
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0251366

Inequality indices to monitor geographic differences in incidence, mortality and fatality rates over time during the COVID-19 pandemic
Cited by: 4
Author(s): Kirsi Manz, Ulrich Mansmann
Software Mentions: 4
Published: about 5 years ago

10.1007/s10393-019-01453-z

Zoonotic Pathogen Seroprevalence in Cattle in a Wildlife–Livestock Interface, Kenya
Cited by: 19
Author(s): Daniel Nthiwa, Silvia Alonso, David Odongo, Eucharia U. Kenya, Bernard K. Bett
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2020.573730

Flexibility in Problem Solving: Analogical Transfer of Tool Use in Toddlers Is Immune to Delay
Cited by: 5
Author(s): Katarzyna Bobrowicz, Felicia Lindström, Marcus Lindblom Lovén, Elia Psouni
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-44877-x

A catalog of single nucleotide changes distinguishing modern humans from archaic hominins
Cited by: 55
Author(s): Martin Kuhlwilm, Cédric Boeckx
Software Mentions: 4
Published: about 7 years ago

10.1007/s43441-020-00237-w

Identifying Anticipated Events of Future Clinical Trials by Leveraging Data from the Placebo Arms of Completed Trials
Cited by: 0
Author(s): Xi Tan, David M. Kern, M. Soledad Cepeda
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00484-19

Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia
Cited by: 21
Author(s): Feargal J. Ryan, Damian Paul Drew, Chloe A. Douglas, Lex E. X. Leong, Max Moldovan, Miriam A. Lynn, Naomi Fink, Anastasia Sribnaia, Irmeli A. Penttila, Andrew J McPhee, Carmel T Collins, Maria Makrides, Robert Gibson, Geraint B. Rogers, David J. Lynn
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12918-017-0423-3

SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks
Cited by: 9
Author(s): Piero Dalle Pezze, Nicolas Le Novère
Software Mentions: 4
Published: over 9 years ago

10.1136/bmjopen-2020-041536

Estimating the COVID-19 epidemic trajectory and hospital capacity requirements in South West England: a mathematical modelling framework
Cited by: 22
Author(s): Ross Booton, Louis MacGregor, Lucy Vass, Katharine J Looker, Catherine Hyams, Philip Bright, Irasha Harding, Rajeka Lazarus, Fergus Hamilton, Daniel J. Lawson, León Danon, Adrian Pratt, Richard M. Wood, Ellen Brooks-Pollock, Katherine Mary Elizabeth Turner
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008786

Physiologically based pharmacokinetic/pharmacodynamic model for the prediction of morphine brain disposition and analgesia in adults and children
Cited by: 9
Author(s): Laurens F. M. Verscheijden, Carlijn H. C. Litjens, Jan B. Koenderink, Ron H.J. Mathijssen, Marcel M. Verbeek, Saskia N. de Wildt, Frans G. M. Rüssel
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1005627

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation
Cited by: 7
Author(s): W. T. Anderson, Danielle DeCicco, James S. Schwaber, Rajanikanth Vadigepalli
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0150568

Within-Host Models of High and Low Pathogenic Influenza Virus Infections: The Role of Macrophages
Cited by: 32
Author(s): Kasia A. Pawelek, Daniel Dor, Cristian Salmeron, Andreas Handel
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2019.00288

Web-gLV: A Web Based Platform for Lotka-Volterra Based Modeling and Simulation of Microbial Populations
Cited by: 24
Author(s): Bhusan K. Kuntal, Chetan Gadgil, Sharmila S. Mande
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0030388

A Triple-Isotope Approach to Predict the Breeding Origins of European Bats
Cited by: 53
Author(s): Ana G. Popa‐Lisseanu, Karin Sörgel, Anja Luckner, Leonard I. Wassenaar, Carlos Ibáñez, Stephanie Kramer‐Schadt, Mateusz Ciechanowski, Tamás Görföl, Ivo Niermann, Grégory Beuneux, Robert W. Mysłajek, Javier Juste, Jocelyn Fonderflick, Detlev H. Kelm, Christian C. Voigt
Software Mentions: 4
Published: over 14 years ago

10.7554/eLife.45450

Positive and negative incentive contrasts lead to relative value perception in ants
Cited by: 21
Author(s): Stephanie Wendt, Kim Strunk, Jürgen Heınze, Andreas Roider, Tomer J. Czaczkes
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.60287

Formicine ants swallow their highly acidic poison for gut microbial selection and control
Cited by: 19
Author(s): Simon Tragust, Claudia Herrmann, Jane Häfner, Ronja Braasch, Christina Tilgen, Maria Hoock, Margarita Artemis Milidakis, Roy Gross, Heike Feldhaar
Software Mentions: 4
Published: over 5 years ago

10.1080/20013078.2018.1461450

ISEV2018 abstract book
Cited by: 157
Author(s): Clotilde Théry, Kenneth W. Witwer
Software Mentions: 4
Published: over 8 years ago

10.3389/fpsyg.2020.02177

The Anxiety-Buffer Hypothesis in the Time of COVID-19: When Self-Esteem Protects From the Impact of Loneliness and Fear on Anxiety and Depression
Cited by: 111
Author(s): Alessandro Rossi, Anna Panzeri, Giada Pietrabissa, Gian Mauro Manzoni, Gianluca Castelnuovo, Stefania Mannarini
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-53023-6

Generation of a Comprehensive Transcriptome Atlas and Transcriptome Dynamics in Medicinal Cannabis
Cited by: 42
Author(s): Shivraj Braich, Rebecca C. Baillie, Larry S. Jewell, Germán Spangenberg, Noel O. I. Cogan
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0248956

Characterizing COVID-19 clinical phenotypes and associated comorbidities and complication profiles
Cited by: 42
Author(s): Elizabeth R. Lusczek, Nicholas E. Ingraham, Basil S. Karam, Jennifer Proper, Lianne Siegel, Erika S. Helgeson, Sahar Lotfi-Emran, Emily Zolfaghari, Emma Jones, Michael Usher, Jeffrey G. Chipman, R. Adams Dudley, Bradley J. Benson, Genevieve B. Melton, Anthony Charles, Monica I. Lupei, Christopher J. Tignanelli
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.ppat.1009804

Identification of immune correlates of fatal outcomes in critically ill COVID-19 patients
Cited by: 34
Author(s): Jonathan Youngs, Nicholas M. Provine, Nicholas Lim, Hannah Sharpe, Ali Amini, Yi‐Ling Chen, Jian Luo, Matthew Edmans, Panagiota Zacharopoulou, Wentao Chen, Oliver Sampson, Robert S Paton, William J Hurt, David A. Duncan, Anna L McNaughton, Vincent N. Miao, Susannah Leaver, Duncan Wyncoll, Jonathan Ball, P Hopkins, Donal Skelly, Eleanor Barnes, Susanna Dunachie, Graham Ogg, Teresa Lambe, Ian D. Pavord, Alex K. Shalek, Craig Thompson, Luzheng Xue, Derek C. Macallan, Philip Goulder, Paul Klenerman, Tihana Bicanic
Software Mentions: 4
Published: almost 5 years ago

10.18632/oncotarget.22947

Spatial habitats from multiparametric MR imaging are associated with signaling pathway activities and survival in glioblastoma
Cited by: 19
Author(s): Katherine Dextraze, Abhijoy Saha, Donnie Kim, Shivali Narang, Michael Lehrer, Aroor R. Rao, Saphal Narang, Dinesh Rao, Salmaan Ahmed, Venkatesh S Madhugiri, Clifton D. Fuller, Michelle M. Kim, Sunil Krishnan, Ganesh Rao, Arvind Rao
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2018.01201

Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
Cited by: 93
Author(s): Jin Zhou, Mindy L. Richlen, Taylor R. Sehein, David M. Kulis, Donald M. Anderson, Zhonghua Cai
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-017-11812-x

Concordant and discordant gene expression patterns in mouse strains identify best-fit animal model for human tuberculosis
Cited by: 32
Author(s): Teresa Domaszewska, Lisa Scheuermann, Karin Hahnke, Hans Mollenkopf, Anca Dorhoi, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 4
Published: almost 9 years ago

10.3389/fnins.2019.01321

Analyzing Neuroimaging Data Through Recurrent Deep Learning Models
Cited by: 63
Author(s): Armin W. Thomas, Hauke R. Heekeren, Klaus Robert Müller, Wojciech Samek
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-019-1523-z

Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineages
Cited by: 12
Author(s): Mengxiao Yan, Ruibin Liu, Ying Liu, Andrew L. Hipp, Min Deng, Yanshi Xiong
Software Mentions: 4
Published: over 6 years ago

10.3389/fphar.2021.708050

A Comparison of Nine Machine Learning Mutagenicity Models and Their Application for Predicting Pyrrolizidine Alkaloids
Cited by: 5
Author(s): Christoph Helma, Verena Schöning, Jürgen Drewe, Philipp Boss
Software Mentions: 4
Published: about 5 years ago

10.3390/v12111290

Highly Pathogenic Avian Influenza (H5N1) Landscape Suitability Varies by Wetland Habitats and the Degree of Interface between Wild Waterfowl and Poultry in India
Cited by: 3
Author(s): Michael Walsh, Siobhan M. Mor, Shaikh Shah Hossain
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-020-04336-3

High-resolution habitat suitability model for Phlebotomus pedifer, the vector of cutaneous leishmaniasis in southwestern Ethiopia
Cited by: 2
Author(s): Myrthe Pareyn, Anneleen Rutten, Behailu Merdekios, Ronja E. M. Wedegärtner, Nigatu Girma, Leo Regelbrugge, Simon Shibru, Herwig Leirs
Software Mentions: 4
Published: almost 6 years ago

10.1186/1756-3305-7-289

Modeling the distribution of the West Nile and Rift Valley Fever vector Culex pipiens in arid and semi-arid regions of the Middle East and North Africa
Cited by: 45
Author(s): Amy K. Conley, Douglas O. Fuller, Nabil Haddad, A. K. Hassan, Ahmed Gad, John C. Beier
Software Mentions: 4
Published: over 12 years ago

10.18632/aging.103172

Overexpression of miR-142-5p inhibits the progression of nonalcoholic steatohepatitis by targeting TSLP and inhibiting JAK-STAT signaling pathway
Cited by: 12
Author(s): Chao Zhou, Pu Wang, Lei Lei, Yi Huang, Yue Wu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-29951-0

Scenario planning with linked land-sea models inform where forest conservation actions will promote coral reef resilience
Cited by: 29
Author(s): Jade M. S. Delevaux, Stacy D. Jupiter, Kostantinos A. Stamoulis, Leah L. Bremer, Amelia S. Wenger, Rachel Dacks, Peter Garrod, K. A. Falinski, Tamara Ticktin
Software Mentions: 4
Published: almost 8 years ago

10.18632/aging.202153

Upregulation of KIF20A promotes tumor proliferation and invasion in renal clear cell carcinoma and is associated with adverse clinical outcome
Cited by: 30
Author(s): Xiaohan Ren, Xinglin Chen, Yisheng Ji, Liang-In Lin, Yunxin Li, Chao Qin, Kai Fang
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.102275

Co-expression network analysis identified hub genes critical to triglyceride and free fatty acid metabolism as key regulators of age-related vascular dysfunction in mice
Cited by: 52
Author(s): Huimin Li, Xinhui Wang, Xinyue Lu, Hongxin Zhu, Sheng Li, Shiwei Duan, Xinzhi Zhao, Fuquan Zhang, Gil Alterovitz, Fudi Wang, Qiang Li, Xiao-Li Tian, Mingqing Xu
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-51245-2

Environmental factors and river network position allow prediction of benthic community assemblies: A model of nematode metacommunities
Cited by: 10
Author(s): Birgit Gansfort, Walter Traunspurger
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2105-10-186

The development of a comparison approach for Illumina bead chips unravels unexpected challenges applying newest generation microarrays
Cited by: 6
Author(s): Daniela Eggle, Svenja Debey–Pascher, Marc Beyer, Joachim L. Schultze
Software Mentions: 4
Published: about 17 years ago