10.3390/cancers13050978

Systematic Identification of MACC1-Driven Metabolic Networks in Colorectal Cancer
Cited by: 2
Author(s): Jan Lisec, Dennis Kobelt, Wolfgang Walther, Margarita Mokrizkij, Carsten Grötzinger, Carsten Jaeger, Katharina Baum, M. Celeste Simon, Jana Wolf, Nicola Beindorff, Winfried Brenner, Ulrike Stein
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.57023

Retrieval practice facilitates memory updating by enhancing and differentiating medial prefrontal cortex representations
Cited by: 14
Author(s): Zhifang Ye, Liang Shi, Anqi Li, Chuansheng Chen, Gui Xue
Software Mentions: 4
Published: about 6 years ago

10.1186/s40104-021-00617-8

Effects of supplemental xylanase and xylooligosaccharides on production performance and gut health variables of broiler chickens
Cited by: 27
Author(s): Amit Kumar Singh, Birendra Mishra, M.R. Bedford
Software Mentions: 4
Published: almost 5 years ago

10.1037/xhp0000548

Orthographic and phonological priming effects in the same–different task.
Cited by: 7
Author(s): Sachiko Kinoshita, Michael Gayed, Dennis Norris
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-90990-1

Contextual prediction errors reorganize naturalistic episodic memories in time
Cited by: 4
Author(s): Fahd Yazin, Moumita Das, Arpan Banerjee, Dipanjan Roy
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-72749-2

Intra-subject consistency of spontaneous eye blink rate in young women across the menstrual cycle
Cited by: 2
Author(s): Esmeralda Hidalgo-Lopez, Georg Zimmermann, Belinda Pletzer
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00426-019-01275-2

Mind-wandering content differentially translates from lab to daily life and relates to subjective stress experience
Cited by: 12
Author(s): Roman Linz, Reena Pauly, Jonathan Smallwood, Veronika Engert
Software Mentions: 4
Published: over 6 years ago

10.1128/mBio.01229-21

Diverse Humoral Immune Responses in Younger and Older Adult COVID-19 Patients
Cited by: 18
Author(s): Jennifer Sasson, Joseph J. Campo, Rebecca Carpenter, Mary K. Young, Arlo Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, Andy Teng, Jozelyn Pablo, Xiaowu Liang, Angela Yee, William A. Petri, David Camerini
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2164-13-42

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies
Cited by: 17
Author(s): Michiel E. Adriaens, Magali Jaillard, Lars Eijssen, Claus Mayer, Chris T. Evelo
Software Mentions: 4
Published: over 14 years ago

10.1186/s12864-018-5101-3

Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis
Cited by: 2
Author(s): Natalia Polouliakh, Paul Horton, Kazuhiro Shibanai, Kodai Takata, Vanessa Ludwig, Samik Ghosh, Hiroaki Kitano
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpsyg.2020.579346

Talking to Cows: Reactions to Different Auditory Stimuli During Gentle Human-Animal Interactions
Cited by: 9
Author(s): Annika Lange, Lisa Bauer, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-12-27

CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes
Cited by: 25
Author(s): Franck Gauthier, O. C. Martin, Matthieu Falque
Software Mentions: 4
Published: over 15 years ago

10.3389/fimmu.2021.620386

CMV Status Drives Distinct Trajectories of CD4+ T Cell Differentiation
Cited by: 11
Author(s): Weiwen Zhang, Anna B. Morris, Erica V. Peek, Geeta Karadkhele, Jennifer Rosenstein, Haydn Kissick, Christian Larsen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.657954

Evaluation of Metagenomic-Enabled Antibiotic Resistance Surveillance at a Conventional Wastewater Treatment Plant
Cited by: 38
Author(s): Haniyyah Majeed, Maria V. Riquelme, Benjamin C. Davis, Suraj Gupta, Luisa Gillian Angeles, Diana S. Aga, Emily Garner, Amy Pruden, Peter J. Vikesland
Software Mentions: 4
Published: about 5 years ago

10.1098/rspb.2020.1303

The timing and asymmetry of plant–pathogen–insect interactions
Cited by: 16
Author(s): Laura J. A. van Dijk, Johan Ehrlén, Ayco J. M. Tack
Software Mentions: 4
Published: almost 6 years ago

10.1001/jamanetworkopen.2020.35782

Development of Electronic Health Record–Based Prediction Models for 30-Day Readmission Risk Among Patients Hospitalized for Acute Myocardial Infarction
Cited by: 16
Author(s): Michael E. Matheny, Iben Ricket, Christine A. Goodrich, Rashmee U. Shah, Meagan E. Stabler, Amy M. Perkins, Chad Dorn, Jason Denton, Bruce E. Bray, Ram Gouripeddi, John Higgins, Wendy W. Chapman, Todd A. MacKenzie, Jeremiah R. Brown
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-019-0252-x

Preferred, small-scale foraging areas of two Southern Ocean fur seal species are not determined by habitat characteristics
Cited by: 9
Author(s): Mia Wege, P. J. Nico de Bruyn, Mark A. Hindell, Mary‐Anne Lea, Marthán N Bester
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.4882

Microsite conditions in retrogressive thaw slumps may facilitate increased seedling recruitment in the Alaskan Low Arctic
Cited by: 13
Author(s): Diane C. Huebner, M. Syndonia Bret‐Harte
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2021.735307

Transcriptomic Signatures of Airway Epithelium Infected With SARS-CoV-2: A Balance Between Anti-infection and Virus Load
Cited by: 3
Author(s): Lingzhang Meng, Houji Qin, Jingjie Zhao, Siyuan He, Qiuju Wei, Zechen Wang, Jiajia Shen, Suren R. Sooranna, Jian Song
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13071-016-1296-9

Effect of landscape features on the relationship between Ixodes ricinus ticks and their small mammal hosts
Cited by: 49
Author(s): Grégoire Perez, Suzanne Bastian, Albert Agoulon, Agnès Bouju, Axelle Durand, Frédéric Faille, Isabelle Lebert, Yann Rantier, Olivier Plantard, Alain Butet
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pcbi.1007510

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data
Cited by: 39
Author(s): Kai Kang, Qian Meng, Igor Shats, David M. Umbach, Melissa Li, Yuanyuan Li, Xiaoling Li, Leping Li
Software Mentions: 4
Published: over 6 years ago

10.1098/rspb.2019.1220

On the diverse and opposing effects of nutrition on pathogen virulence
Cited by: 35
Author(s): Victoria L. Pike, Katrina A. Lythgoe, Kayla C. King
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.3311

Evolutionary divergence in life history traits among populations of the Lake Malawi cichlid fish <i>Astatotilapia calliptera</i>
Cited by: 6
Author(s): Paul J. Parsons, Jon R. Bridle, Lukas Rüber, Martin J. Genner
Software Mentions: 4
Published: almost 9 years ago

10.1126/scitranslmed.aau6242

Estimating cholera incidence with cross-sectional serology
Cited by: 43
Author(s): Andrew S. Azman, Justin Lessler, Francisco J. Luquero, Taufiqur Rahman Bhuiyan, Ashraful Islam Khan, Fahima Chowdhury, Alamgir Kabir, Marc Gurwith, Ana A. Weil, Jason B. Harris, Stephen B. Calderwood, Edward T. Ryan, Firdausi Qadri, Daniel T. Leung
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.118.200646

A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat
Cited by: 10
Author(s): Nicholas Santantonio, Jean‐Luc Jannink, Mark E. Sorrells
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0248341

Quantity and quality: Normative open-access neuroimaging databases
Cited by: 2
Author(s): S.J.S. Isherwood, Pierre‐Louis Bazin, Anneke Alkemade, Birte U. Forstmann
Software Mentions: 4
Published: over 5 years ago

10.15252/msb.20177656

Toward an integrated map of genetic interactions in cancer cells
Cited by: 65
Author(s): Benedikt Rauscher, Florian Heigwer, Luisa Henkel, Thomas Hielscher, Oksana Voloshanenko, Michael Boutros
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-016-2403-1

RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations
Cited by: 20
Author(s): Edin Hamzić, Rikke Brødsgaard Kjærup, Núria Mach, Guilietta Minozzi, Francesco Strozzi, V. Gualdi, J. L. Williams, Jun Chen, Eva Wattrang, Bart Buitenhuis, Helle R. Juul‐Madsen, Tina Sørensen Dalgaard
Software Mentions: 4
Published: over 10 years ago

10.1093/bioinformatics/btz778

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution
Cited by: 5
Author(s): Magdalena E Strauß, Paul Kirk, John E. Reid, Lorenz Wernisch
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12874-016-0277-1

Clinical prediction in defined populations: a simulation study investigating when and how to aggregate existing models
Cited by: 21
Author(s): Glen P. Martin, Mamas A. Mamas, Niels Peek, Iain Buchan, Matthew Sperrin
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-62574-y

Changes in Reef Fish Community Structure Following the Deepwater Horizon Oil Spill
Cited by: 19
Author(s): Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David Chagaris, William F. Patterson
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-59415-3

Incentive motivation improves numerosity discrimination: Insights from pupillometry combined with drift-diffusion modelling
Cited by: 10
Author(s): Annika Dix, Shu‐Chen Li
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2164-15-982

Retinal transcriptome profiling at transcription start sites: a cap analysis of gene expression early after axonal injury
Cited by: 19
Author(s): Masayuki Yasuda, Yuji Tanaka, Koji M. Nishiguchi, Morin Ryu, S. Tsuda, Kouichi Maruyama, Toru Nakazawa
Software Mentions: 4
Published: over 11 years ago

10.1186/s12864-018-4499-y

Transcripts within rod photoreceptors of the Zebrafish retina
Cited by: 28
Author(s): Chi Sun, Carlos Galicia, Deborah L. Stenkamp
Software Mentions: 4
Published: over 8 years ago

10.1128/mBio.03348-19

An Advanced Human Intestinal Coculture Model Reveals Compartmentalized Host and Pathogen Strategies during <i>Salmonella</i> Infection
Cited by: 21
Author(s): Leon N. Schulte, Matthias Schweinlin, Alexander J. Westermann, Harshavardhan Janga, Sara Correia Santos, Silke Appenzeller, Heike Walles, Jörg Vogel, Marco Metzger
Software Mentions: 4
Published: over 6 years ago

10.3389/fendo.2019.00135

Popular Diabetes Apps and the Impact of Diabetes App Use on Self-Care Behaviour: A Survey Among the Digital Community of Persons With Diabetes on Social Media
Cited by: 69
Author(s): Mihiretu Kebede, Claudia R. Pischke
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2021.658736

A Prognostic Model Based on the Immune-Related lncRNAs in Colorectal Cancer
Cited by: 16
Author(s): Fen Qin, Houxi Xu, Guoli Wei, Ji Yi, Jialin Yu, Canhong Hu, Chunyi Yuan, Yuzhu Ma, Jun Qian, Lingchang Li, Jiege Huo
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.605015

RNA-Seq Profiling of Circular RNAs During Development of Hindgut in Rat Embryos With Ethylenethiourea-Induced Anorectal Malformations
Cited by: 5
Author(s): Si Ying Li, Chen Yi Wang, Yun Xiao, Xiao Tang, Zheng Wei Yuan, Yu Bai
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-59549-4

Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
Cited by: 7
Author(s): Katrine Højholt Iversen, Louise Rasmussen, Kosai Al-Nakeeb, José Juan Almagro Armenteros, Christian Salgård Jensen, Rimtas Dargis, Oksana Lukjancenko, Ulrik Stenz Justesen, Claus Moser, Flemming Schønning Rosenvinge, Xiaohui Chen Nielsen, Jens Jørgen Christensen, Simon Rasmussen
Software Mentions: 4
Published: over 6 years ago

10.3389/fmed.2021.654635

Multi-Omics Integrative Analysis Uncovers Molecular Subtypes and mRNAs as Therapeutic Targets for Liver Cancer
Cited by: 4
Author(s): Yi Shen, Wei Xiong, Qi Gu, Qin Zhang, Yue Jia, Changsong Liu, Duan Wang
Software Mentions: 4
Published: about 5 years ago

10.1002/acm2.12678

Optimizing efficiency and safety in external beam radiotherapy using automated plan check (APC) tool and six sigma methodology
Cited by: 17
Author(s): Lukui Shi, Karl Bush, Julian Bertini, Yabo Fu, J. K. Lewis, Daniel Pham, Yong Yang, Thomas Niedermayr, Lawrie Skinner, Xing Li, Beth M. Beadle, Annie Hsu, Nataliya Kovalchuk
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2164-15-899

Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season
Cited by: 40
Author(s): Ran Di, Jianning He, Shuhui Song, Dongmei Tian, Qiuyue Liu, Xiaojun Liang, Qing Ma, Min Sun, Jiandong Wang, Wenming Zhao, G. L. Cao, Jinxin Wang, Ziyin Yang, Ying Ge, Mingxing Chu
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12916-020-01605-x

Circulating mRNAs are differentially expressed in pregnancies with severe placental insufficiency and at high risk of stillbirth
Cited by: 23
Author(s): Natalie J. Hannan, Owen Stock, Rebecca Spencer, Clare Whitehead, Anna L. David, Katie Groom, Scott Petersen, Amanda Henry, Joanne Said, Sean Seeho, Stefan C. Kane, Lavinia Gordon, Sally Beard, Kantaraja Chindera, Smita T. Karegodar, Richard Hiscock, Natasha Pritchard, Tu’uhevaha J Kaitu’u-Lino, Susan Walker, Stephen Tong
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.724655

Super-Enhancer Induced IL-20RA Promotes Proliferation/Metastasis and Immune Evasion in Colorectal Cancer
Cited by: 12
Author(s): Du Yu, Xiao Yang, Jia Wei Lin, Zichao Cao, Chenghao Lu, Zheyu Yang, Minhua Zheng, Ruijun Pan, Wei Cai
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.541479

Identification and Validation of Novel Biomarkers for Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 26
Author(s): Xiaoyi Hu, Mingyang Bao, Jiacheng Huang, Lin Zhou, Shusen Zheng
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2020.00835

Genomics Score Based on Genome-Wide Network Analysis for Prediction of Survival in Gastric Cancer: A Novel Prognostic Signature
Cited by: 4
Author(s): Zhiwei Sun, Hao Chen, Zhen Han, Weicai Huang, Yanfeng Hu, Mingli Zhao, Tian Lin, Jiang Yu, Hao Líu, Yuming Jiang, Guoxin Li
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmolb.2021.633951

Identification of Epithelial-Mesenchymal Transition-Related lncRNAs that Associated With the Prognosis and Immune Microenvironment in Colorectal Cancer
Cited by: 6
Author(s): Chuan Liu, Chuan Hu, Jianyi Li, Liqing Jiang, Chengliang Zhao
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.724541

Scoring System Based on RNA Modification Writer-Related Genes to Predict Overall Survival and Therapeutic Response in Bladder Cancer
Cited by: 3
Author(s): Pu Zhang, Zijian Liu, Decai Wang, Yunxue Li, Yifei Xing, Yajun Xiao
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-42512-3

Standard laboratory housing for mice restricts their ability to segregate space into clean and dirty areas
Cited by: 19
Author(s): I. Joanna Makowska, Becca Franks, Cathy El-Hinn, Tina Jørgensen, Daniel M. Weary
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2021.648329

Deep Learning Reveals Key Immunosuppression Genes and Distinct Immunotypes in Periodontitis
Cited by: 10
Author(s): Wanchen Ning, Aneesha Acharya, Zhenjie Sun, Anthony Chukwunonso Ogbuehi, Cong Liu, Shiting Hua, Qiyun Ou, Muhui Zeng, Xiangqiong Liu, Yupei Deng, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, George Pelekos, Yan Wang, Xianda Hu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.00917

Nuclear Lamin B1 Interactions With Chromatin During the Circadian Cycle Are Uncoupled From Periodic Gene Expression
Cited by: 19
Author(s): Annaël Brunet, Frida Forsberg, Qiong Fan, Thomas Sæther, Philippe Collas
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/3766659

Multiomics Differences in Lung Squamous Cell Carcinoma Patients with High Radiosensitivity Index Compared with Those with Low Radiosensitivity Index
Cited by: 2
Author(s): You Wei Du, Shengtao Yuan, Xibing Zhuang, Qi Zhang, Tiankui Qiao
Software Mentions: 4
Published: almost 5 years ago

10.1002/hep.26414

Proteome‐wide analyses of human hepatocytes during differentiation and dedifferentiation
Cited by: 108
Author(s): Cliff Rowe, Dave T. Gerrard, Roz Jenkins, Andrew Berry, Kesta Durkin, Lars Sundström, Chris Goldring, B. Kevin Park, Neil R. Kitteringham, Karen Piper Hanley, Neil A. Hanley
Software Mentions: 4
Published: about 13 years ago

10.1186/s13024-020-00394-4

Trem2 deficiency differentially affects phenotype and transcriptome of human APOE3 and APOE4 mice
Cited by: 40
Author(s): Nicholas F. Fitz, Cody M. Wolfe, Brittany E. Playso, Richard J. Biedrzycki, Yi Lü, Kyong Nyon Nam, Iliya Lefterov, Radosveta Koldamova
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-08109-4

Cross-scale habitat structure driven by coral species composition on tropical reefs
Cited by: 35
Author(s): Laura E. Richardson, Nicholas A. J. Graham, Andrew S. Hoey
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2016.01078

Region 4 of Rhizobium etli Primary Sigma Factor (SigA) Confers Transcriptional Laxity in Escherichia coli
Cited by: 1
Author(s): Orlando Santillán, Miguel A. Ramı́rez-Romero, Luis Lozano, Alberto Checa, Sergio Encarnación, Guillermo Dávila
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2019.00170

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater
Cited by: 18
Author(s): Florian Trigodet, Nicolas Larché, Hilary G. Morrison, Mohamed Jebbar, Dominique Thierry, Loïs Maignien
Software Mentions: 4
Published: over 7 years ago

10.1186/s13073-014-0081-7

Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach
Cited by: 31
Author(s): Huy Gia Vuong, Feixiong Cheng, Lin Chen, Zhongming Zhao
Software Mentions: 4
Published: almost 12 years ago

10.1038/s41398-018-0342-0

Assessment of somatic single-nucleotide variation in brain tissue of cases with schizophrenia
Cited by: 15
Author(s): John F. Fullard, Alexander Charney, Georgios Voloudakis, Andrew Uzilov, Vahram Haroutunian, Panos Roussos
Software Mentions: 4
Published: over 7 years ago

10.3389/fmolb.2021.715215

Decoding Partner Specificity of Opioid Receptor Family
Cited by: 3
Author(s): Carlos Barreto, Salete J. Baptista, António Preto, Daniel Silvério, Rita Melo, Irina S. Moreira
Software Mentions: 4
Published: almost 5 years ago

10.3389/fneur.2021.682535

New-Onset Postoperative Seizures in Patients With Diffuse Gliomas: A Risk Assessment Analysis
Cited by: 3
Author(s): Lianwang Li, Guanzhang Li, Fang Sun, Kenan Zhang, Ruoyu Huang, Yinyan Wang, Chuanbao Zhang, Yiming Li, Wei Zhang, Zhong Zhang, Jin Wei Qiang, Dabiao Zhou, Xing Fan, Tao Jiang
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2021.576382

Potential Molecular Mechanism of TNF Superfamily-Related Genes in Glioblastoma Multiforme Based on Transcriptome and Epigenome
Cited by: 6
Author(s): Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Wei-Cheng Lu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13148-019-0804-0

Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature
Cited by: 36
Author(s): Andrea Ciolfi, Erfan Aref‐Eshghi, Simone Pizzi, Lucia Pedace, Evelina Miele, Jennifer Kerkhof, Elisabetta Flex, Simone Martinelli, Francesca Clementina Radio, Claudia Ruivenkamp, Gijs W.E. Santen, Emilia K. Bijlsma, Daniela Q.C.M. Barge-Schaapveld, Katrin Õunap, Victoria Mok Siu, R. Frank Kooy, Bruno Dallapiccola, Bekim Sadiković, Marco Tartaglia
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-91346-5

Analysis of the shape of the T-wave in congenital long-QT syndrome type 3 by geometric morphometrics
Cited by: 1
Author(s): Hitoshi Horigome, Yasuhiro Ishikawa, Kazuhiro Takahashi, Masao Yoshinaga, Naokata Sumitomo
Software Mentions: 4
Published: about 5 years ago

10.1007/s00213-017-4790-7

Effects of caffeine on reaction time are mediated by attentional rather than motor processes
Cited by: 12
Author(s): Christopher W. N. Saville, Helma M. de Morree, Neil M. Dundon, Samuele Maria Marcora, Christoph Klein
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2229-14-169

RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications
Cited by: 190
Author(s): Lei Wang, Chenlong Cao, Qibin Ma, Qiaoying Zeng, Haifeng Wang, Zhihao Cheng, Genfeng Zhu, Ji Qi, Hong Mā, Hai Nian, Yingxiang Wang
Software Mentions: 4
Published: over 12 years ago

10.1128/mSystems.00029-19

Ultrahigh-Throughput Multiplexing and Sequencing of &gt;500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
Cited by: 82
Author(s): Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-15-474

The human miRNA repertoire of different blood compounds
Cited by: 56
Author(s): Petra Leidinger, Christina Backes, Benjamin Meder, Eckart Meese, Andreas Keller
Software Mentions: 4
Published: about 12 years ago

10.1523/ENEURO.0166-18.2018

Genetic Control of Myelin Plasticity after Chronic Psychosocial Stress
Cited by: 45
Author(s): Mikaela Laine, Kalevi Trontti, Zuzanna Misiewicz, Ewa Sokołowska, Natalia Kulesskaya, Aino Heikkinen, Suvi Saarnio, Ingrid Balcells, Pierre Ameslon, Dario Greco, Pirkko Mattila, Pekka Ellonen, Lars Paulín, Petri Auvinen, Eija Jokitalo, Iiris Hovatta
Software Mentions: 4
Published: about 8 years ago

10.1098/rsos.181942

Common noctules exploit low levels of the aerosphere
Cited by: 20
Author(s): M. Teague O’Mara, Martin Wikelski, Bart Kranstauber, Dina K. N. Dechmann
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2019.00600

Five-Feature Model for Developing the Classifier for Synergistic vs. Antagonistic Drug Combinations Built by XGBoost
Cited by: 38
Author(s): Xiangjun Ji, Weida Tong, Zhichao Liu, Tieliu Shi
Software Mentions: 4
Published: about 7 years ago

10.3389/fneur.2021.610797

Development of an Immune-Related Prognostic Index Associated With Glioblastoma
Cited by: 4
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Yaya Zhang, Yuanyuan Xie, Bingchang Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12885-020-06774-9

Sepsis-associated pathways segregate cancer groups
Cited by: 5
Author(s): Himanshu Tripathi, Samanwoy Mukhopadhyay, Saroj Kant Mohapatra
Software Mentions: 4
Published: over 6 years ago

10.1016/j.molcel.2019.03.010

A Secreted RNA Binding Protein Forms RNA-Stabilizing Granules in the Honeybee Royal Jelly
Cited by: 35
Author(s): Eyal Maori, Isabela Cunha Navarro, Humberto Boncristiani, David J. Seilly, Konrad L. M. Rudolph, Alexandra Sapetschnig, Chi-Chuan Lin, John E. Ladbury, Jay D. Evans, Jonathan L. Heeney, Eric A. Miska
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2020.517637

The Landscape of Immune Cells Infiltrating in Prostate Cancer
Cited by: 54
Author(s): Zhicong Wu, Hua Chen, Wenyang Luo, Hanyun Zhang, Guihuan Li, Fanning Zeng, Fan Deng
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.526009

Prediction of Postoperative Ileus in Patients With Colorectal Cancer by Preoperative Gut Microbiota
Cited by: 14
Author(s): Ye Jin, Rui Geng, Yang Liu, Lujia Liu, Xiangren Jin, Fuya Zhao, Jing Feng, Yunwei Wei
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1007890

Genes encoding SATB2-interacting proteins in adult cerebral cortex contribute to human cognitive ability
Cited by: 15
Author(s): Isabella Cera, Laura Whitton, Gary Donohoe, Derek W. Morris, Georg Dechant, Galina Apostolova
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1006636

TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF
Cited by: 69
Author(s): Hannah Seberg, Eric Van Otterloo, Stacie K. Loftus, Huan Liu, Greg Bonde, Ramakrishna Sompallae, Derek Gildea, Juan Francisco de Paz Santana, J. Robert Manak, William J. Pavan, Trevor Williams, Robert A. Cornell
Software Mentions: 4
Published: over 9 years ago

10.1111/mec.15699

Diversity of gut microbiomes in marine fishes is shaped by host‐related factors
Cited by: 43
Author(s): Qi Huang, Ronia Chung-tin Sham, Yu Deng, Yanping Mao, Chunxiao Wang, Tong Zhang, Kenneth M.Y. Leung
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00082

Pod Dehiscence in Hairy Vetch (Vicia villosa Roth)
Cited by: 16
Author(s): Lisa Kissing Kucek, Heathcliffe Riday, Bryce P. Rufener, Allen N. Burke, Sarah Seehaver Eagen, Nancy Ehlke, Sarah Krogman, Steven B. Mirsky, S. Chris Reberg‐Horton, Matthew R. Ryan, Sandra Wayman, Nick P. Wiering
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms8010030

Influence of Sampling Site and other Environmental Factors on the Bacterial Community Composition of Domestic Washing Machines
Cited by: 20
Author(s): Susanne Jacksch, Dominik Kaiser, Severin Weis, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2015.00028

How to build personalized multi-omics comorbidity profiles
Cited by: 46
Author(s): Mohammad Ali Moni, Píetro Lió
Software Mentions: 4
Published: about 11 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0188264

Wnt co-receptors Lrp5 and Lrp6 differentially mediate Wnt3a signaling in osteoblasts
Cited by: 25
Author(s): Aimy Sebastian, Nicholas R. Hum, Deepa K. Murugesh, Sarah Hatsell, Aris N. Economides, Gabriela G. Loots
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-021-04170-z

Estimating colocalization probability from limited summary statistics
Cited by: 3
Author(s): Emily King, Fengjiao Dunbar, J. Wade Davis, Jacob F. Degner
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.567249

Molecular Mechanism Underlying Derepressed Male Production in Hexaploid Persimmon
Cited by: 7
Author(s): Kanae Masuda, Naoko Fujita, Ho Wen Yang, Koichiro Ushijima, Yasutaka Kubo, Ryutaro Tao, Takashi Akagi
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00294

Methylation-Driven Genes Identified as Novel Prognostic Indicators for Thyroid Carcinoma
Cited by: 12
Author(s): Liting Lv, Liyu Cao, Guoqing Hu, Qinyan Shen, Jiaming Wu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008189

Host-dependent nitrogen recycling as a mechanism of symbiont control in Aiptasia
Cited by: 66
Author(s): Guoxin Cui, Yi Jin Liew, Yong Li, Najeh M. Kharbatia, Noura Ibrahim Omar Zahran, Abdul‐Hamid Emwas, Vı́ctor M. Eguı́luz, Manuel Aranda
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2021.716750

Differentially Amplified Repetitive Sequences Among Aegilops tauschii Subspecies and Genotypes
Cited by: 3
Author(s): Rahman Ebrahimzadegan, Fatemeh Orooji, Pengtao Ma, Ghader Mirzaghaderi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0123569

XomAnnotate: Analysis of Heterogeneous and Complex Exome- A Step towards Translational Medicine
Cited by: 5
Author(s): Asoke K. Talukder, Shashidhar Ravishankar, Krittika Sasmal, Santhosh Gandham, Jyothsna Prabhukumar, Prahalad Achutharao, Debmalya Barh, Francesco Blasi
Software Mentions: 4
Published: over 11 years ago

10.1128/mBio.01718-20

The Role of Phosphorus Limitation in Shaping Soil Bacterial Communities and Their Metabolic Capabilities
Cited by: 49
Author(s): Angela M. Oliverio, Andrew Bissett, Krista L. McGuire, Kristin Saltonstall, Benjamín L. Turner, Noah Fierer
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0141910

Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?
Cited by: 25
Author(s): Shanrong Zhao, Li Xi, Baohong Zhang
Software Mentions: 4
Published: over 10 years ago

10.1186/s12898-019-0271-7

Adaptation of wild boar (Sus scrofa) activity in a human-dominated landscape
Cited by: 52
Author(s): Franz Johann, Markus Handschuh, Peter Linderoth, Carsten F. Dormann, Janosch Arnold
Software Mentions: 4
Published: over 6 years ago

10.7150/thno.45989

LncRNA CSMD1-1 promotes the progression of Hepatocellular Carcinoma by activating MYC signaling
Cited by: 22
Author(s): Ji Liu, Rui Xu, Shi-Juan Mai, Yu‐Shui Ma, Mei‐Yin Zhang, Ping‐Sheng Cao, Nuoqing Weng, Ruiqi Wang, Di Cao, Wei Wei, Rong Guo, Yaojun Zhang, Li Xu, Minshan Chen, Huizhong Zhang, Long Huang, Da Fu, Huiyun Wang
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.1592

The role of geography and host abundance in the distribution of parasitoids of an alien pest
Cited by: 7
Author(s): Petra Nováková, Jaroslav Holuša, Jakub Horák
Software Mentions: 4
Published: over 10 years ago

10.3389/fpsyt.2021.617997

Multisite Comparison of MRI Defacing Software Across Multiple Cohorts
Cited by: 25
Author(s): Athena Theyers, Mojdeh Zamyadi, Mark F. O’Reilly, Robert Bartha, Sean Symons, Glenda MacQueen, Stefanie Hassel, Jason P. Lerch, Evdokia Anagnostou, Raymond W. Lam, Benício N. Frey, Roumen Milev, Daniel J. Müller, Sidney H. Kennedy, Christopher J. Scott, Stephen C. Strother, Stephen R. Arnott
Software Mentions: 4
Published: over 5 years ago

10.3390/nu11051032

Plasma Metabolites Associated with Coffee Consumption: A Metabolomic Approach within the PREDIMED Study
Cited by: 15
Author(s): Christopher Papandreou, Pablo Hernández‐Alonso, Mònica Bulló, Miguel Ruiz‐Canela, Edward Yu, Marta Guasch‐Ferré, Estefanía Toledo, Courtney Dennis, Amy Deik, Clary B. Clish, Cristina Razquín, Dolores Corella, Ramón Estruch, Emilio Ros, Montserrat Fitó, Fernando Arós, Miquel Fiol, José Lapetra, Cristina Ruano, Liming Liang, Miguel Ángel Martínez‐González, Frank B. Hu, Jordi Salas‐Salvadó
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0109262

De Novo Assembly of the Common Bean Transcriptome Using Short Reads for the Discovery of Drought-Responsive Genes
Cited by: 48
Author(s): Jing Wu, Lanfen Wang, Long Li, Shumin Wang
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0091918

RNA-Sequence Analysis of Primary Alveolar Macrophages after In Vitro Infection with Porcine Reproductive and Respiratory Syndrome Virus Strains of Differing Virulence
Cited by: 34
Author(s): Bouabid Badaoui, Teresa Rutigliano, Anna Anselmo, Merijn Vanhee, Hans Nauwynck, Elisabetta Giuffra, Sara Botti
Software Mentions: 4
Published: over 12 years ago