10.1016/j.ajhg.2019.03.025

Cell-Type Heterogeneity in Adipose Tissue Is Associated with Complex Traits and Reveals Disease-Relevant Cell-Specific eQTLs
Cited by: 76
Author(s): Craig A. Glastonbury, Alexessander Couto Alves, Julia S. El-Sayed Moustafa, Kerrin S. Small
Software Mentions: 4
Published: about 7 years ago

10.1186/s13321-020-00451-6

Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
Cited by: 9
Author(s): Simon Bray, Tharindu Senapathi, Christopher B. Barnett, Björn Grüning
Software Mentions: 4
Published: almost 6 years ago

10.1107/S1399004715011426

From deep TLS validation to ensembles of atomic models built from elemental motions
Cited by: 14
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, A.H. Van Benschoten, James S. Fraser, Paul D. Adams
Software Mentions: 4
Published: almost 11 years ago

10.1038/srep25398

Influence of DNA extraction methods on relative telomere length measurements and its impact on epidemiological studies
Cited by: 40
Author(s): Julia Raschenberger, Claudia Lamina, Margot Haun, Barbara Kollerits, Stefan Coassin, Eva Boes, Ludmilla Kedenko, Anna Köttgen, Florian Kronenberg
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-018-26259-x

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
Cited by: 22
Author(s): Marie‐Alice Fraiture, Assia Saltykova, Stefan Hoffman, Raf Winand, Dieter Deforce, Kevin Vanneste, Sigrid C. J. De Keersmaecker
Software Mentions: 4
Published: about 8 years ago

10.1155/2014/134023

Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives
Cited by: 105
Author(s): Ivan Merelli, Horacio Pérez‐Sánchez, Sandra Gesing, Daniele D’Agostino
Software Mentions: 4
Published: over 12 years ago

10.3389/fneur.2020.610192

Delayed Neurosurgical Intervention in Traumatic Brain Injury Patients Referred From Primary Hospitals Is Not Associated With an Unfavorable Outcome
Cited by: 2
Author(s): Niklas Grevfors, Caroline Lindblad, David W. Nelson, Mikael Svensson, Eric Peter Thelin, Rebecka Rubenson Wahlin
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.02343-19

Reintroducing mothur: 10 Years Later
Cited by: 132
Author(s): Patrick D. Schloss
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.65948

Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments
Cited by: 42
Author(s): Sylvie Estrela, Alicia Sánchez-Gorostiaga, Jean C. C. Vila, Álvaro Sánchez
Software Mentions: 4
Published: over 5 years ago

10.1093/icb/icz007

Leukocyte Profiles Reflect Geographic Range Limits in a Widespread Neotropical Bat
Cited by: 22
Author(s): Daniel J. Becker, Cecilia Nachtmann, Hernán Darío Argibay, Gonzalo Núñez, Marina Escalera-Zamudio, Jorge Carrera, Carlos Tello, Erik Winiarski, Alex D. Greenwood, Maria L. Méndez-Ojeda, Elizabeth Loza-Rubio, Anne Lee, Benoı̂t de Thoisy, Gábor Á. Czirják, Raina K. Plowright, Sonia Altizer, Daniel G. Streicker
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0237950

Individual response to antidepressants for depression in adults-a meta-analysis and simulation study
Cited by: 10
Author(s): Klaus Munkholm, Stephanie Winkelbeiner, Philipp Homan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2021.660750

Teaching the Teachers About Language Support Strategies: Effects on Young Children's Language Development
Cited by: 5
Author(s): Katharina Voltmer, Oliver Hormann, Marcus Pietsch, Claudia Maehler, Maria von Salisch
Software Mentions: 4
Published: about 5 years ago

10.3390/s21020430

WSN-SES/MB: System Entity Structure and Model Base Framework for Large-Scale Wireless Sensor Networks
Cited by: 6
Author(s): Su Man Nam, Hyung Jong Kim
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0222011

Human-induced fire regime shifts during 19th century industrialization: A robust fire regime reconstruction using northern Polish lake sediments
Cited by: 19
Author(s): Elisabeth Dietze, Dariusz Brykała, Laura T. Schreuder, Krzysztof Jażdżewski, Olivier Blarquez, Achim Brauer, Michael Dietze, Milena Obremska, Florian Ott, Anna Pieńczewska, Stefan Schouten, Ellen C. Hopmans, Michael Słowiński
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.1838

Squares of different sizes: effect of geographical projection on model parameter estimates in species distribution modeling
Cited by: 14
Author(s): Lara Budic, Gregor Didenko, Carsten F. Dormann
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0255368

Application of endocrine biomarkers to update information on reproductive physiology in gray whale (Eschrichtius robustus)
Cited by: 13
Author(s): Valentina Melica, Shannon Atkinson, John Calambokidis, Aimée R. Lang, Jonathan J. Scordino, Franz J. Mueter
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.633751

Aboveground and Belowground Plant Traits Explain Latitudinal Patterns in Topsoil Fungal Communities From Tropical to Cold Temperate Forests
Cited by: 5
Author(s): Jun Teng, Jing Tian, Romain L. Barnard, Guirui Yu, Yakov Kuzyakov, Jizhong Zhou
Software Mentions: 4
Published: about 5 years ago

10.1136/bmjopen-2019-035640

Prevalence and clinical implications of respiratory viruses in stable chronic obstructive pulmonary disease (COPD) and exacerbations: a systematic review and meta-analysis protocol
Cited by: 8
Author(s): Anastasia Maria Kefala, Rebecca Fortescue, Gioulinta S. Alimani, Prodromos Kanavidis, Melissa McDonnell, Emmanouil Magiorkinis, Spyridon Megremis, Dimitrios Paraskevis, Chrysa Voyiatzaki, Georgios A. Mathioudakis, Effie Papageorgiou, Nikolaos G. Papadopoulos, Jørgen Vestbo, Apostolos Beloukas, Alexander G. Mathioudakis
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0211827

A new approach to measure the resistance of fabric to liquid and viral penetration
Cited by: 6
Author(s): Min Li, Jennifer L. Furlong, Patrick L. Yorio, Lee Portnoff
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0245064

Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts
Cited by: 19
Author(s): Anne L. Dunlop, Alicynne Glazier Essalmi, Lyndsay Alvalos, Carrie V. Breton, Carlos A. Camargo, Whitney Cowell, Dana Dabelea, Stephen R. Dager, Cristiane S. Duarte, Amy J. Elliott, Raina N. Fichorova, James E. Gern, Monique M. Hedderson, Elizabeth Hom Thepaksorn, Kathi Huddleston, Margaret R. Karagas, Ken Kleinman, Leslie D. Leve, Ximin Li, Yijun Li, Augusto A. Litonjua, Yunin Ludena-Rodriguez, Juliette C. Madan, Julio Mateus Nino, Cynthia McEvoy, Thomas G. O’Connor, Amy Padula, Nigel Paneth, Frederica P. Perera, Sheela Sathyanarayana, Rebecca J. Schmidt, Robert T. Schultz, Jessica Snowden, Joseph B. Stanford, Leonardo Trasande, Heather E. Volk, William Wheaton, Rosalind J. Wright, Monica McGrath
Software Mentions: 4
Published: over 5 years ago

10.1111/1751-7915.13871

Strain diversity of plant‐associated <i>Lactiplantibacillus plantarum</i>
Cited by: 15
Author(s): Alice Yu, Elissa A. Goldman, Jason T. Brooks, Benjamin L. Golomb, Irene S. Yim, Velitchka Gotcheva, Angel Angelov, Eun Bae Kim, Maria L. Marco
Software Mentions: 4
Published: about 5 years ago

10.1136/bmjopen-2020-043505

Insufficient iodine nutrition status and the risk of pre-eclampsia: a systemic review and meta-analysis
Cited by: 6
Author(s): Charles Bitamazire Businge, Anthony Usenbo, Benjamin Longo-Mbenza, André Pascal Kengne
Software Mentions: 4
Published: over 5 years ago

10.1111/1751-7915.12190

The <scp>R</scp>sm regulon of plant growth‐promoting <scp><i>P</i></scp><i>seudomonas fluorescens</i> <scp>SS</scp>101: role of small <scp>RNA</scp>s in regulation of lipopeptide biosynthesis
Cited by: 17
Author(s): Song Cui, Menno van der Voort, Judith E. van de Mortel, Karl A. Hassan, Liam D. H. Elbourne, Ian T. Paulsen, Joyce E. Loper, Jos M. Raaijmakers
Software Mentions: 4
Published: over 11 years ago

10.1186/s13321-021-00513-3

Deep learning integration of molecular and interactome data for protein–compound interaction prediction
Cited by: 4
Author(s): Narumi Watanabe, Yuuto Ohnuki, Yasubumi Sakakibara
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-018-0568-3

Fecal source identification using random forest
Cited by: 85
Author(s): Adélaïde Roguet, A. Murat Eren, Ryan J. Newton, Sandra L. McLellan
Software Mentions: 4
Published: almost 8 years ago

10.1523/ENEURO.0237-16.2016

Circadian Forced Desynchrony of the Master Clock Leads to Phenotypic Manifestation of Depression in Rats
Cited by: 41
Author(s): Miriam Ben-Hamo, Tracy A. Larson, Leanne S. Duge, Carl Sikkema, Charles W. Wilkinson, Horacio O. de la Iglesia, Mónica M. C. González
Software Mentions: 4
Published: over 9 years ago

10.1186/s13104-016-2064-9

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses
Cited by: 40
Author(s): Marie Lisandra Zepeda Mendoza, Kristine Bohmann, Aldo Carmona Baez, M. Thomas P. Gilbert
Software Mentions: 4
Published: about 10 years ago

10.1007/s13304-021-01079-3

Feasibility and safety of robotic-assisted total pancreatectomy: a pilot western series
Cited by: 5
Author(s): Emanuele Federico Kauffmann, Niccolò Napoli, Valerio Genovese, Michael Ginesini, Cesare Gianfaldoni, Fabio Vistoli, G Amorese, Ugo Boggi
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.00593

Genome Sequence, Assembly and Characterization of Two Metschnikowia fructicola Strains Used as Biocontrol Agents of Postharvest Diseases
Cited by: 51
Author(s): Edoardo Piombo, Noa Sela, Michael Wisniewski, Maria Hoffmann, M. L. Gullino, Marc W. Allard, E.J. Levin, D. Spadaro, Samir Droby
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pcbi.1008936

Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?
Cited by: 15
Author(s): Jon Kapla, Ismael Rodríguez‐Espigares, Flavio Ballante, Jana Selent, Jens Carlsson
Software Mentions: 4
Published: about 5 years ago

10.1080/23311908.2018.1424680

Brain’s functional network clustering coefficient changes in response to instruction (RTI) in students with and without reading disabilities: Multi-leveled reading brain’s RTI
Cited by: 7
Author(s): Todd L. Richards, Virginia W. Berninger, Kevin Yagle, Robert D. Abbott, Dan Peterson
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-79422-8

FlavorGraph: a large-scale food-chemical graph for generating food representations and recommending food pairings
Cited by: 13
Author(s): Donghyeon Park, Keonwoo Kim, Seoyoon Kim, Michael Spranger, Jaewoo Kang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-015-0657-2

Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysis
Cited by: 8
Author(s): Itziar Frades, Svante Resjö, Erik Andréasson
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12859-020-3427-8

Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data
Cited by: 33
Author(s): Aaron Smith, Jonathan R. Walsh, John M. Long, Craig B. Davis, Peter V. Henstock, Martin R. Hodge, Mateusz Maciejewski, Xinmeng Jasmine Mu, Stephen Ra, Shanrong Zhao, Daniel Ziemek, Charles K. Fisher
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2164-14-425

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing
Cited by: 47
Author(s): Shanrong Zhao, Kurt Prenger, Lance Smith, Thomas Messina, Huiying Fan, Edward P. Jaeger, S. A. Stephens
Software Mentions: 4
Published: over 13 years ago

10.1186/s13229-020-00372-z

Placebo response in pharmacological and dietary supplement trials of autism spectrum disorder (ASD): systematic review and meta-regression analysis
Cited by: 32
Author(s): Spyridon Siafis, Oğulcan Çıray, Johannes Schneider‐Thoma, Irene Bighelli, Marc Krause, Alessandro Rodolico, Anna Ceraso, Giacomo Deste, Maximilian Huhn, David Fraguas, Dimitris Mavridis, Tony Charman, Declan Murphy, Mara Parellada, Celso Arango, Stefan Leucht
Software Mentions: 4
Published: almost 6 years ago

10.3758/s13428-020-01360-0

Multiple moderator meta-analysis using the R-package Meta-CART
Cited by: 16
Author(s): Xinru Li, Elise Dusseldorp, Xiaogang Su, Jacqueline J. Meulman
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0238876

Identification and validation of early genetic biomarkers for apple replant disease
Cited by: 11
Author(s): Annmarie-Deetja Rohr, Jessica Schimmel, Benye Liu, Georg Guggenberger, Traud Winkelmann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0235009

Identifying hotspots of cardiometabolic outcomes based on a Bayesian approach: The example of Chile
Cited by: 3
Author(s): Gloria Aguayo, Anna Schritz, María Ruiz-Castell, Luís Villarroel, Gonzalo Valdívia, Guy Fagherazzi, Daniel R. Witte, Andrew Lawson
Software Mentions: 4
Published: about 6 years ago

10.1186/s12920-016-0193-6

Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values
Cited by: 6
Author(s): Matteo Comin, Michele Schimd
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0210431

Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders
Cited by: 20
Author(s): Arthur Sant’Anna Feltrin, Ana Carolina Tahira, Sérgio Nery Simões, Helena Brentani, David Martins
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-018-2485-7

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Cited by: 590
Author(s): Michael J. Roach, Simon A. Schmidt, Anthony R. Borneman
Software Mentions: 4
Published: over 7 years ago

10.1016/S2215-0366(19)30416-X

Comparative effects of 18 antipsychotics on metabolic function in patients with schizophrenia, predictors of metabolic dysregulation, and association with psychopathology: a systematic review and network meta-analysis
Cited by: 433
Author(s): Toby Pillinger, Robert McCutcheon, Luke Vano, Yuya Mizuno, Atheeshaan Arumuham, Guy Hindley, Katherine Beck, Sridhar Natesan, Orestis Efthimiou, Andrea Cipriani, Oliver Howes
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2016.01468

Altered Precipitation Impacts on Above- and Below-Ground Grassland Invertebrates: Summer Drought Leads to Outbreaks in Spring
Cited by: 40
Author(s): Marcel D. Torode, Kirk Barnett, Sarah L. Facey, Uffe N. Nielsen, Sally A. Power, Scott N. Johnson
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0227161

Assessing trends and vulnerabilities in the mutualism between whitebark pine (Pinus albicaulis) and Clark’s nutcracker (Nucifraga columbiana) in national parks of the Sierra-Cascade region
Cited by: 2
Author(s): Chris Ray, Regina M. Rochefort, Jason I. Ransom, Jonathan C. B. Nesmith, Sylvia Haultain, Taza D. Schaming, John R. Boetsch, Mandy L Holmgren, Robert L. Wilkerson, Rodney B. Siegel
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80145-z

Sex-specific differences in peripheral blood leukocyte transcriptional response to LPS are enriched for HLA region and X chromosome genes
Cited by: 10
Author(s): Michelle M. Stein, Mitchell Conery, Kevin M. Magnaye, Selene M. Clay, Christine Billstrand, Raluca Nicolae, Katherine A. Naughton, Carole Ober, Emma E. Thompson
Software Mentions: 4
Published: over 5 years ago

10.1128/mBio.01408-18

Heterosubtypic Protections against Human-Infecting Avian Influenza Viruses Correlate to Biased Cross-T-Cell Responses
Cited by: 23
Author(s): Min Zhao, Kefang Liu, Jiejian Luo, Shuguang Tan, Chuansong Quan, Shuijun Zhang, Yan Chai, Jianxun Qi, Yan Li, Yang Bi, Haixia Xiao, Gary Wong, Jianfang Zhou, Taijiao Jiang, Wenjun Liu, Hongjie Yu, Jinghua Yan, Yingxia Liu, Yuelong Shu, Guizhen Wu, Aiping Wu, George F. Gao, William J. Liu
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.6053

One size does not fit all: Customizing MCMC methods for hierarchical models using NIMBLE
Cited by: 14
Author(s): Lauren C. Ponisio, Perry de Valpine, Nicholas Michaud, Daniel Turek
Software Mentions: 4
Published: over 6 years ago

10.1101/2020.08.17.254839

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
Cited by: 5
Author(s): Justin Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica Munoz‐Torres, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Software Mentions: 4
Published: almost 6 years ago

10.1111/1365-2656.12798

Soil temperature effects on the structure and diversity of plant and invertebrate communities in a natural warming experiment
Cited by: 44
Author(s): Sinikka I. Robinson, Órla B. McLaughlin, Bryndís Marteinsdóttir, Eoin J. O’Gorman
Software Mentions: 4
Published: over 8 years ago

10.1186/s12918-018-0566-x

KF-finder: identification of key factors from host-microbial networks in cervical cancer
Cited by: 15
Author(s): Jialu Hu, Yiqun Gao, Yanyan Zheng, Xuequn Shang
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0255545

Comparative efficacy of single-inhaler triple therapies for COPD: A protocol for systematic review and network meta-analysis
Cited by: 0
Author(s): Yu-Long Jiang, Hao Hu, Siu-wai Leung
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.639913

Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 5 years ago

10.3390/vaccines7040215

Mapping Host-Related Correlates of Influenza Vaccine-Induced Immune Response: An Umbrella Review of the Available Systematic Reviews and Meta-Analyses
Cited by: 13
Author(s): Alexander Domnich, Ilaria Manini, Giovanna Elisa Calabrò, Chiara de Waure, Emanuele Montomoli
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2018.02689

Analysis of a Large Standardized Food Challenge Data Set to Determine Predictors of Positive Outcome Across Multiple Allergens
Cited by: 18
Author(s): Sayantani Sindher, Andrew J. Long, Natasha Purington, Madeleine Chollet, Sara C. Slatkin, Sandra Andorf, Dana Tupa, Divya Kumar, Margaret Woch, Katherine O'Laughlin, Amal Assa’ad, Jacqueline A. Pongracic, Jonathan M. Spergel, Jonathan S. Tam, Stephen A. Tilles, Julie Wang, Stephen J. Galli, R. Sharon Chinthrajah
Software Mentions: 4
Published: over 7 years ago

10.14202/vetworld.2021.1263-1271

An Estimate of Global Anthrax Prevalence in Livestock: A Meta-analysis
Cited by: 10
Author(s): Sushma Bylaiah, S. Seema, Kuralayanapalya Puttahonnappa Suresh, Leena Gowda, S. S. Patil, Srikantha Gowda
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-81193-9

INSPECTOR: free software for magnetic resonance spectroscopy data inspection, processing, simulation and analysis
Cited by: 21
Author(s): Martin Gajdošík, Karl Landheer, Kelley M. Swanberg, Christoph Juchem
Software Mentions: 4
Published: over 5 years ago

10.3390/s21113600

Development and Validation of an ISA100.11a Simulation Model for Accurate Industrial WSN Planning and Deployment
Cited by: 1
Author(s): Zoltan Padrah, Andra Pastrav, Tudor Palade, Ovidiu Ratiu, Emanuel Puşchiţă
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2020.599284

Introducing a Controlled Outdoor Environment Impacts Positively in Cat Welfare and Owner Concerns: The Use of a New Feline Welfare Assessment Tool
Cited by: 1
Author(s): Luciana Santos de Assis, Daniel S. Mills
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0101239

Visualizing Molecular Profiles of Glioblastoma with GBM-BioDP
Cited by: 49
Author(s): Orieta Celiku, Seth Johnson, Shuping Zhao, Kevin Camphausen, Uma Shankavaram
Software Mentions: 4
Published: about 12 years ago

10.1186/s12918-018-0534-5

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis
Cited by: 7
Author(s): Petronela Buiga, Ari Elson, Lydia Tabernero, Jean-Marc Schwartz
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0141524

Application of Penalized Regression Techniques in Modelling Insulin Sensitivity by Correlated Metabolic Parameters
Cited by: 17
Author(s): Christian Göbl, Latife Bozkurt, Andrea Tura, Giovanni Pacini, Alexandra Kautzky–Willer, Martina Mittlböck
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-015-1954-x

Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken
Cited by: 8
Author(s): David Wragg, Andrew S. Mason, Lejun Yu, Richard Kuo, Raman Akinyanju Lawal, Takele Taye Desta, Joram M. Mwacharo, Chang-Yeon Cho, Stephen J. Kemp, David W. Burt, Olivier Hanotte
Software Mentions: 4
Published: almost 11 years ago

10.3390/cells8121566

Stromal Cell Signature Associated with Response to Neoadjuvant Chemotherapy in Locally Advanced Breast Cancer
Cited by: 20
Author(s): Maria Lúcia Hirata Katayama, René Aloísio da Costa Vieira, Victor Piana de Andrade, Rosimeire Aparecida Roela, Luciana Lima, Lígia Maria Kerr, Adriano Polpo de Campos, Carlos Alberto Pereira, Pedro Adolpho de Menezes Pacheco Serio, Giselly Encinas, Simone Maistro, Matheus de Almeida Leite Petroni, Maria Mitzi Brentani, Maria Aparecida Azevedo Koike Folgueira
Software Mentions: 4
Published: over 6 years ago

10.1038/s41419-021-03649-0

Maheshvara regulates JAK/STAT signaling by interacting and stabilizing hopscotch transcripts which leads to apoptosis in Drosophila melanogaster
Cited by: 0
Author(s): Bhawana Maurya, Satya Surabhi, Rituparna Das, Pranjali Pandey, Ashim Mukherjee, Mousumi Mutsuddi
Software Mentions: 4
Published: over 5 years ago

10.3390/vaccines5040037

Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward
Cited by: 8
Author(s): David J. Lemler, Hayden Brochu, Fang Yang, Erin Harrell, Xinxia Peng
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2021.675048

A Simple Culture Method Enhances the Recovery of Culturable Actinobacteria From Coastal Sediments
Cited by: 6
Author(s): Zhongdong Huang, Shiqing Mo, Lifei Yan, Xiaomei Wei, Yangze Huang, Lizhen Zhang, Shuhui Zhang, Jianzong Liu, Qing Xiao, Hong Lin, Yu Guo
Software Mentions: 4
Published: about 5 years ago

10.1099/mgen.0.000312

Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids
Cited by: 13
Author(s): Thomas Vognbjerg Sydenham, Søren Overballe‐Petersen, Henrik Hasman, Hannah M. Wexler, Michael Kemp, Ulrik Stenz Justesen
Software Mentions: 4
Published: over 6 years ago

10.12669/pjms.35.4.194

Diabetes in Pakistan: A systematic review and meta-analysis
Cited by: 27
Author(s): Sohail Akhtar, Jamal Abdul Nasir, Tahir Abbas, Aqsa Sarwar
Software Mentions: 4
Published: about 7 years ago

10.1016/j.bja.2020.05.061

Intrathecal hydrophilic opioids for abdominal surgery: a meta-analysis, meta-regression, and trial sequential analysis
Cited by: 39
Author(s): Mark V. Koning, Markus Klimek, K. Rijs, Robert Jan Stolker, M. Heesen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2021.661296

Combined Analysis of Volatile Terpenoid Metabolism and Transcriptome Reveals Transcription Factors Related to Terpene Synthase in Two Cultivars of Dendrobium officinale Flowers
Cited by: 20
Author(s): Ninghong Li, Yan Dong, Min Lv, Qian Li, Xinwei Sun, Liu Lin, Yongping Cai, Honghong Fan
Software Mentions: 4
Published: over 5 years ago

10.3390/genes11111303

Mitochondrial Sequencing of Missing Persons DNA Casework by Implementing Thermo Fisher’s Precision ID mtDNA Whole Genome Assay
Cited by: 19
Author(s): Daniela Cuenca, Jessica Battaglia, Michelle Halsing, Sandra Sheehan
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-21917-6

Multimorbidity patterns in relation to polypharmacy and dosage frequency: a nationwide, cross-sectional study in a Japanese population
Cited by: 64
Author(s): Takuya Aoki, Yosuke Yamamoto, Tatsuyoshi Ikenoue, Yoshihiro Ônishi, Shunichi Fukuhara
Software Mentions: 4
Published: over 8 years ago

10.1080/19490976.2021.1927635

Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Cited by: 8
Author(s): Patrick Browne, Frederik Cold, Andreas Munk Petersen, Sofie Ingdam Halkjær, Alice Højer Christensen, Stig Günther, Lars Hestbjerg Hansen
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2019.00113

Efficacy of Hepatic Resection vs. Radiofrequency Ablation for Patients With Very-Early-Stage or Early-Stage Hepatocellular Carcinoma: A Population-Based Study With Stratification by Age and Tumor Size
Cited by: 26
Author(s): Yiquan Jiang, Zi‐Xian Wang, Yihui Deng, Yang Yang, Guoying Wang
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-85179-5

A systematic review with network meta-analysis on mono strategy of anaesthesia for preeclampsia in caesarean section
Cited by: 1
Author(s): Chao Cheng, Alan Hsi-Wen Liao, Chien‐Yu Chen, Yu-Cih Lin, Yi‐No Kang
Software Mentions: 4
Published: over 5 years ago

10.1007/s11060-017-2649-8

Local alkylating chemotherapy applied immediately after 5-ALA guided resection of glioblastoma does not provide additional benefit
Cited by: 20
Author(s): William Sage, Mathew R. Guilfoyle, Catriona Luney, Adam M. H. Young, Rohitashwa Sinha, Donatella Sgubin, Joseph H. McAbee, Roy Ma, Sarah Jefferies, R. Jena, Frances Harris, Kieren Allinson, Tomasz Matys, Wendi Qian, Thomas Santarius, Stephen J. Price, Colin Watts
Software Mentions: 4
Published: over 8 years ago

10.1186/s13071-015-1164-z

Effect of gastro-intestinal nematode infection on sheep performance: a systematic review and meta-analysis
Cited by: 145
Author(s): Fabien Mavrot, Hubertus Hertzberg, Paul R. Torgerson
Software Mentions: 4
Published: almost 11 years ago

10.1128/mSphere.00194-18

Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial Community
Cited by: 19
Author(s): Adit Chaudhary, Imrose Kauser, Anirban Ray, Rachel Poretsky
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0159688

Internal Tooth Structure and Burial Practices: Insights into the Neolithic Necropolis of Gurgy (France, 5100-4000 cal. BC)
Cited by: 10
Author(s): Mona Le Luyer, Michaël Coquerelle, Stéphane Rottier, Priscilla Bayle
Software Mentions: 4
Published: about 10 years ago

10.1002/mbo3.320

Altered acetylation and succinylation profiles in <i>Corynebacterium glutamicum</i> in response to conditions inducing glutamate overproduction
Cited by: 49
Author(s): Yuta Mizuno, Megumi Nagano‐Shoji, Shosei Kubo, Y. Kawamura, Ayako Yoshida, Hisashi Kawasaki, Makoto Nishiyama, Minoru Yoshida, Saori Kosono
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-019-39142-0

Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning
Cited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 7 years ago

10.1155/2014/914767

<i>Geodermatophilus poikilotrophi</i>sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Cited by: 32
Author(s): María del Carmen Montero-Calasanz, Benjamin Hofner, Markus Göker, Manfred Rohde, Cathrin Spröer, Karima Hezbri, Maher Gtari, Peter Schümann, Hans‐Peter Klenk
Software Mentions: 4
Published: over 12 years ago

10.3390/pathogens9060500

Classical Swine Fever Virus Biology, Clinicopathology, Diagnosis, Vaccines and a Meta-Analysis of Prevalence: A Review from the Indian Perspective
Cited by: 14
Author(s): Yashpal Singh Malik, Sushant Bhat, O.R. Vinodh Kumar, Ajay Yadav, Shubhankar Sircar, Mohd Ikram Ansari, D. K. Sarma, T.K. Rajkhowa, Souvik Ghosh, Kuldeep Dhama
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2019.01249

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
Cited by: 9
Author(s): Anna Furches, David Kainer, Deborah Weighill, Annabel Large, Piet Jones, Angelica M. Walker, Jonathon Romero, João Gabriel Felipe Machado Gazolla, Wayne Joubert, Manesh Shah, Jared Streich, Priya Ranjan, Jeremy Schmutz, Avinash Sreedasyam, David Macaya‐Sanz, Nan Zhao, Madhavi Z. Martin, Xiaolan Rao, Richard A. Dixon, Stephen P. DiFazio, Timothy J. Tschaplinski, Jay Chen, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 4
Published: almost 7 years ago

10.2196/17872

A Nonproprietary Movement Analysis System (MoJoXlab) Based on Wearable Inertial Measurement Units Applicable to Healthy Participants and Those With Anterior Cruciate Ligament Reconstruction Across a Range of Complex Tasks: Validation Study
Cited by: 8
Author(s): Riasat Islam, Mohamed Bennasar, Kevin Nicholas, Kate Button, Simon Holland, Paul Mulholland, Bob Price, Mohammad Al-Amri
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.704218

RGB Three-Channel SWE-Based Ultrasomics Model: Improving the Efficiency in Differentiating Focal Liver Lesions
Cited by: 2
Author(s): Minquan Cheng, Meng-Fei Xian, Wei Tian, Ming‐De Li, Hang-Tong Hu, Wei Li, Jianchao Zhang, Yang Huang, Xiaoyan Xie, Ming-De Lü, Ming Kuang, Wei Wang, Si-Min Ruan, Li-Da Chen
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0091414

Where Wolves Kill Moose: The Influence of Prey Life History Dynamics on the Landscape Ecology of Predation
Cited by: 24
Author(s): Robert A. Montgomery, John A. Vucetich, Gary J. Roloff, Joseph K. Bump, Rolf O. Peterson
Software Mentions: 4
Published: over 12 years ago

10.1186/s12887-021-02881-z

Can high-flow nasal cannula reduce the risk of bronchopulmonary dysplasia compared with CPAP in preterm infants? A systematic review and meta-analysis
Cited by: 5
Author(s): Sabrina de Jesus Brito, Sabrina Pinheiro Tsopanoglou, Endi Lanza Galvão, Franciele Ângelo de Deus, Vanessa Pereira de Lima
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-015-1816-6

Uncovering co-expression gene network modules regulating fruit acidity in diverse apples
Cited by: 54
Author(s): Yang Bai, Laura Dougherty, Lailiang Cheng, Gan-Yuan Zhong, Kenong Xu
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pbio.1002512

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates
Cited by: 160
Author(s): Szabolcs Horvát, Răzvan Gămănuţ, Mária Ercsey-Ravasz, Loïc Magrou, Bianca Gămănuț, David C. Van Essen, Andreas Burkhalter, Kenneth Knoblauch, Zoltán Toroczkai, Henry Kennedy
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0238057

First field estimation of greenhouse gas release from European soil-dwelling Scarabaeidae larvae targeting the genus Melolontha
Cited by: 2
Author(s): Carolyn-Monika Görres, Claudia Kammann
Software Mentions: 4
Published: almost 6 years ago

10.1002/ctm2.462

Diversity and intratumoral heterogeneity in human gallbladder cancer progression revealed by single‐cell RNA sequencing
Cited by: 16
Author(s): Peizhan Chen, Yueqi Wang, Jingquan Li, Xiaobo Bo, Jie Wang, Lingxi Nan, Changcheng Wang, Qian Ba, Houbao Liu, Hui Wang
Software Mentions: 4
Published: about 5 years ago

10.1155/2019/9523719

Attention-Based Multi-NMF Deep Neural Network with Multimodality Data for Breast Cancer Prognosis Model
Cited by: 13
Author(s): Hongling Chen, Mingyan Gao, Ying Zhang, Wenbin Liang, Xuan Zou
Software Mentions: 4
Published: about 7 years ago

10.1038/srep12615

Decrease of mRNA Editing after Spinal Cord Injury is Caused by Down-regulation of ADAR2 that is Triggered by Inflammatory Response
Cited by: 27
Author(s): Antonio Fabio Di Narzo, Alexey Kozlenkov, Yongchao Ge, Bin Zhang, Leo Sanelli, Zacnicte May, Yanqing Li, Karim Fouad, Christopher P. Cardozo, Eugene V. Koonin, David J. Bennett, Stella Dracheva
Software Mentions: 4
Published: almost 11 years ago

10.1155/2013/704589

Sensory Recovery Outcome after Digital Nerve Repair in Relation to Different Reconstructive Techniques: Meta-Analysis and Systematic Review
Cited by: 46
Author(s): Felix J. Paprottka, Petra Wolf, Yves Harder, Yasmin Kern, Philipp M. Paprottka, Hans‐Günther Machens, Jörn Andreas Lohmeyer
Software Mentions: 4
Published: almost 13 years ago

10.1002/humu.23277

MiSynPat: An integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases
Cited by: 34
Author(s): Luc Moulinier, Raymond Ripp, Gaston Castillo, Olivier Poch, Marie Sissler
Software Mentions: 4
Published: about 9 years ago

10.3389/fmolb.2020.00027

Conformational Changes Induced by S34Y and R98C Variants in the Death Domain of Myd88
Cited by: 2
Author(s): Vijayakumar Gosu, Kyeong-Hye Won, Jae-Don Oh, Donghyun Shin
Software Mentions: 4
Published: over 6 years ago

10.1093/aje/kwab146

Comparison of Relative Survival and Cause-Specific Survival in Men With Prostate Cancer According to Age and Risk Category: A Nationwide, Population-Based Study
Cited by: 4
Author(s): Andri Wilberg Orrason, Hans Garmo, Johan Styrke, Paul W. Dickman, Pär Stattin
Software Mentions: 4
Published: about 5 years ago

10.1002/cam4.3614

Characteristics and prognosis of synchronous multiple primary lung cancer after surgical treatment: A systematic review and meta‐analysis of current evidence
Cited by: 15
Author(s): Hongtao Tie, Jun Luo, Rui Shi, Zhenhan Li, Dan Chen, Qingchen Wu
Software Mentions: 4
Published: over 5 years ago