10.1186/s13062-020-00267-2

AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4
Cited by: 87
Author(s): Mario S. Valdés-Tresanco, Mario E. Valdés‐Tresanco, Pedro A. Valiente, Ernesto Moreno
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.639913

Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.11359

Development of an inexpensive matrix-assisted laser desorption—time of flight mass spectrometry method for the identification of endophytes and rhizobacteria cultured from the microbiome associated with maize
Cited by: 7
Author(s): Michael G. LaMontagne, Phi L. Tran, Alexander Benavidez, Lisa Morano
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.65948

Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments
Cited by: 42
Author(s): Sylvie Estrela, Alicia Sánchez-Gorostiaga, Jean C. C. Vila, Álvaro Sánchez
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1005822

Regulation of Stem Cell Proliferation and Cell Fate Specification by Wingless/Wnt Signaling Gradients Enriched at Adult Intestinal Compartment Boundaries
Cited by: 64
Author(s): Ai Tian, Hassina Benchabane, Zhenghan Wang, Yashi Ahmed
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-020-03565-8

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community
Cited by: 22
Author(s): Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, M. A. Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
Software Mentions: 4
Published: almost 6 years ago

10.1111/imb.12585

Developmental expression and evolution of hexamerin and haemocyanin from <i>Folsomia candida</i> (Collembola)
Cited by: 3
Author(s): Yangyang Liang, Wei Xie, Yigang Luan
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-89364-4

Diversification of the Balloon bushcrickets (Orthoptera, Hexacentrinae, Aerotegmina) in the East African mountains
Cited by: 3
Author(s): Beata Grzywacz, Elżbieta Warchałowska‐Śliwa, Maciej Kociński, Klaus‐Gerhard Heller, Claudia Hemp
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-018-4783-x

The genomic features of parasitism, Polyembryony and immune evasion in the endoparasitic wasp Macrocentrus cingulum
Cited by: 27
Author(s): Chuanlin Yin, Meizhen Li, Jian Hu, Kun Lang, Qiming Chen, Jinding Liu, Dan Guo, Kang He, Yipei Dong, Jiapeng Luo, Zhenkun Song, James R. Walters, Wenqing Zhang, Fĕi Li, Xue-Xin Chen
Software Mentions: 4
Published: about 8 years ago

10.1001/jamanetworkopen.2021.14723

Performance of a Machine Learning Algorithm Using Electronic Health Record Data to Identify and Estimate Survival in a Longitudinal Cohort of Patients With Lung Cancer
Cited by: 43
Author(s): Qian Yuan, Tianrun Cai, Chuan Hong, Mulong Du, Bruce E. Johnson, Michael Lanuti, Tianxi Cai, David C. Christiani
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008589

Systematic review and meta-analysis of the epidemiology of Lassa virus in humans, rodents and other mammals in sub-Saharan Africa
Cited by: 21
Author(s): Sébastien Kenmoe, Serges Tchatchouang, Jean Thierry Ebogo‐Belobo, Aude Christelle Ka’e, Gadji Mahamat, Raïssa Estelle Guiamdjo Simo, Arnol Bowo‐Ngandji, Cynthia Paola Demeni Emoh, Emmanuel Che, Dimitri Tchami Ngongang, Marie Amougou‐Atsama, Nathalie Diane Nzukui, Chris André Mbongue Mikangue, Donatien Serge Mbaga, Sorel Kenfack, Sandrine Rachel Kingue Bebey, Nathalie Amvongo-Adjia, Atembeh Noura Efietngab, Hervé Raoul Tazokong, Abdou Fatawou Modiyinji, Cyprien Kengne‐Nde, Serge Alain Sadeuh-Mba, Richard Njouom
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-019-2676-x

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Cited by: 5
Author(s): Taewoon Joo, Ji-Hye Choi, Jihye Lee, So Eun Park, Youngsic Jeon, Sae Hoon Jung, Hyun Goo Woo
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.19893

The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status
Cited by: 16
Author(s): Dongming Li, Ana Marie S. Palanca, So Youn Won, Lei Gao, Ying Feng, Ajay A. Vashisht, Li Liu, Yuanyuan Zhao, Xigang Liu, Xiuyun Wu, Shaofang Li, Brandon H. Le, Yun Ju Kim, Guodong Yang, Shengben Li, Jinyuan Liu, James A. Wohlschlegel, Hongwei Guo, Beixin Mo, Xuemei Chen, Julie A. Law
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.01656

Linseed Oil Supplementation of Lambs’ Diet in Early Life Leads to Persistent Changes in Rumen Microbiome Structure
Cited by: 36
Author(s): Tamsin Lyons, T. M. Boland, Sean Storey, Evelyn Doyle
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13073-020-00740-7

Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues
Cited by: 24
Author(s): Jean-David Larouche, Assya Trofimov, Leslie Hesnard, Grégory Ehx, Qingchuan Zhao, Krystel Vincent, Chantal Durette, Patrick Gendron, Jean‐Philippe Laverdure, Éric Bonneil, Caroline Côté, Sébastien Lemieux, Pierre Thibault, Claude Perreault
Software Mentions: 4
Published: about 6 years ago

10.1523/ENEURO.0524-20.2021

Sharing an Open Stimulation System for Auditory EEG Experiments Using Python, Raspberry Pi, and HifiBerry
Cited by: 1
Author(s): Alexandra Corneyllie, Fabien Perrin, Lizette Heine
Software Mentions: 4
Published: about 5 years ago

10.1038/sdata.2018.305

The sequence and de novo assembly of hog deer genome
Cited by: 7
Author(s): Wei Wang, Yan Huang, Shiyi Chen, Zhenzhen Li, Jun Yi, Lili Niu, Jia-Po Deng, Weigang Chen, Yunfeng Pu, Xianbo Jia, Yu Qu, Ang Chen, Yan Zhong, Xiaoxi Yu, Shuai Pang, Wanlong Huang, Yue Han, Guangjian Liu, Jianqiu Yu
Software Mentions: 4
Published: over 7 years ago

10.1186/1752-0509-7-93

JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis
Cited by: 17
Author(s): Prashant K. Srivastava, Richard Hull, Jacques Behmoaras, Enrico Petretto, Timothy J. Aitman
Software Mentions: 4
Published: almost 13 years ago

10.1111/jth.13613

Clustering of glycoprotein VI (GPVI) dimers upon adhesion to collagen as a mechanism to regulate GPVI signaling in platelets
Cited by: 82
Author(s): Natalie S. Poulter, Alice Y. Pollitt, Dylan M. Owen, Elizabeth E. Gardiner, Robert K. Andrews, Hiroyuki Shimizu, Daisuke Ishikawa, Dominique Bihan, Richard W. Farndale, Masaaki Moroi, Steve P. Watson, Stéphanie Jung
Software Mentions: 4
Published: over 9 years ago

10.1093/bioinformatics/btz470

Scaling tree-based automated machine learning to biomedical big data with a feature set selector
Cited by: 216
Author(s): Trang T. Le, Weixuan Fu, Jason H. Moore
Software Mentions: 4
Published: about 7 years ago

10.1038/srep38274

Edge enhancement improves disruptive camouflage by emphasising false edges and creating pictorial relief
Cited by: 27
Author(s): John T. Egan, Rebecca J. Sharman, Kenneth C. Scott-Brown, P. George Lovell
Software Mentions: 4
Published: over 9 years ago

10.1002/1878-0261.12692

DAPK3 participates in the mRNA processing of immediate early genes in chronic lymphocytic leukaemia
Cited by: 2
Author(s): Fraser Thomas, Katie Holmes, Sarah Kreuz, Peter Hillmen, Pascal Lefèvre
Software Mentions: 4
Published: about 6 years ago

10.1002/1878-0261.12052

A genome-wide siRNA screen for regulators of tumor suppressor p53 activity in human non-small cell lung cancer cells identifies components of the RNA splicing machinery as targets for anticancer treatment
Cited by: 50
Author(s): Ellen Siebring-van Olst, Maxime Blijlevens, Renée X. de Menezes, Ida H. van der Meulen-Muileman, Egbert F. Smit, Victor W. van Beusechem
Software Mentions: 4
Published: over 9 years ago

10.1186/s13321-020-00451-6

Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
Cited by: 9
Author(s): Simon Bray, Tharindu Senapathi, Christopher B. Barnett, Björn Grüning
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijerph18042186

Psychological Impact of Pro-Anorexia and Pro-Eating Disorder Websites on Adolescent Females: A Systematic Review
Cited by: 14
Author(s): Carmela Mento, Maria Catena Silvestri, Maria Rosaria Anna Muscatello, Amelia Rizzo, Laura Celebre, Martina Praticò, Rocco Antonio Zoccali, Antonio Bruno
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0008164

Occupational exposure to Brucella spp.: A systematic review and meta-analysis
Cited by: 37
Author(s): Carine Rodrigues Pereira, João Vitor Fernandes Cotrim de Almeida, Izabela Regina Cardoso de Oliveira, Luciana Faria de Oliveira, Luciano José Pereira, Márcio Gilberto Zangerônimo, Andrey Pereira Lage, Elaine Maria Seles Dorneles
Software Mentions: 4
Published: about 6 years ago

10.1002/hbm.25245

Sex‐differences in network level brain dynamics associated with pain sensitivity and pain interference
Cited by: 12
Author(s): Junseok A. Kim, Rachael L. Bosma, Kasey S. Hemington, Anton Rogachov, Natalie R. Osborne, Jui‐Ching Cheng, Benjamin T. Dunkley, Karen D. Davis
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.patter.2021.100212

VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples
Cited by: 26
Author(s): Daniele Ramazzotti, Fabrizio Angaroni, Davide Maspero, Carlo Gambacorti‐Passerini, Marco Antoniotti, Alex Graudenzi, Rocco Piazza
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-019-2914-2

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery
Cited by: 33
Author(s): Zheng Gao, Gang Fu, Cheng Ouyang, Satoshi Tsutsui, Xiaozhong Liu, Jeremy J. Yang, Christopher R Gessner, Brian Foote, David Wild, Ying Ding, Qi Yu
Software Mentions: 4
Published: about 7 years ago

10.3390/s19081933

A Review of Remote Sensing Approaches for Monitoring Blue Carbon Ecosystems: Mangroves, Seagrassesand Salt Marshes during 2010–2018
Cited by: 83
Author(s): Tien Dat Pham, Junshi Xia, Nam Thang Ha, Dieu Tien Bui, Nga Nhu Le, Wataru Tekeuchi
Software Mentions: 4
Published: about 7 years ago

10.1186/s40795-019-0315-6

Relationship between ethanol consumption and TBL2 rs17145738 on LDL-C concentration in Japanese adults: a four season 3-day weighed diet record study
Cited by: 1
Author(s): Shin‐ichi Akimoto, Chiho Goto, Kiyonori Kuriki
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-07200-x

iCLIP analysis of RNA substrates of the archaeal exosome
Cited by: 2
Author(s): Jochen Bathke, A. Susann Gauernack, Oliver Rupp, Lennart Weber, Christian Preußer, Marcus Lechner, Oliver Roßbach, Alexander Goesmann, Elena Evguenieva‐Hackenberg, Gabriele Klug
Software Mentions: 4
Published: over 5 years ago

10.1107/S2059798321001765

Protein identification from electron cryomicroscopy maps by automated model building and side-chain matching
Cited by: 7
Author(s): Thomas C. Terwilliger, Oleg V. Sobolev, Pavel V. Afonine, Paul D. Adams, Chin-Ming Ho, Xiaorun Li, Z. Hong Zhou
Software Mentions: 4
Published: over 5 years ago

10.1093/jxb/ery147

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution
Cited by: 24
Author(s): HueyTyng Lee, Agnieszka A. Golicz, Philipp E. Bayer, Anita A. Severn‐Ellis, Chon‐Kit Kenneth Chan, Jacqueline Batley, Gary A. Kendrick, David Edwards
Software Mentions: 4
Published: over 8 years ago

10.1186/s12920-019-0605-5

Prediction of comorbid diseases using weighted geometric embedding of human interactome
Cited by: 8
Author(s): Pakeeza Akram, Li Liao
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0048375

NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation
Cited by: 99
Author(s): Markus Neuditschko, Mehar S. Khatkar, Herman W. Raadsma
Software Mentions: 4
Published: over 13 years ago

10.3389/fonc.2020.573318

PHF20 Promotes Glioblastoma Cell Malignancies Through a WISP1/BGN-Dependent Pathway
Cited by: 6
Author(s): Qianquan Ma, Wenyong Long, Changsheng Xing, Chongming Jiang, Jun Su, Helen Y. Wang, Qing Liu, Rong Fu Wang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pbio.3001270

Tempo and mode of morphological evolution are decoupled from latitude in birds
Cited by: 4
Author(s): Jonathan P. Drury, Julien Clavel, Joe Tobias, Jonathan Rolland, Catherine Sheard, Hélène Morlon
Software Mentions: 4
Published: almost 5 years ago

10.1177/1073191119866257

The Reliability of the Wisconsin Card Sorting Test in Clinical Practice
Cited by: 51
Author(s): Bruno Kopp, Florian Lange, Alexander Steinke
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0232853

An assessment of the impacts of litter treatments on the litter quality and broiler performance: A systematic review and meta-analysis
Cited by: 17
Author(s): Taiani dos Santos de Toledo, Aline Arassiana Piccini Roll, Fernando Rutz, Henrique Müller Dallmann, Marcos Antonio Dai Prá, Fábio Pereira Leivas Leite, Victor Fernando Büttow Roll
Software Mentions: 4
Published: about 6 years ago

10.1186/s12887-021-02881-z

Can high-flow nasal cannula reduce the risk of bronchopulmonary dysplasia compared with CPAP in preterm infants? A systematic review and meta-analysis
Cited by: 5
Author(s): Sabrina de Jesus Brito, Sabrina Pinheiro Tsopanoglou, Endi Lanza Galvão, Franciele Ângelo de Deus, Vanessa Pereira de Lima
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0064744

Population Structure of Atlantic Mackerel (Scomber scombrus)
Cited by: 45
Author(s): Teunis Jansen, Henrik Gislason
Software Mentions: 4
Published: about 13 years ago

10.3390/s21020430

WSN-SES/MB: System Entity Structure and Model Base Framework for Large-Scale Wireless Sensor Networks
Cited by: 6
Author(s): Su Man Nam, Hyung Jong Kim
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0157665

Development and Validation of a New Clinical Scale for Infants with Acute Respiratory Infection: The ReSVinet Scale
Cited by: 35
Author(s): Antonio José Justicia-Grande, Jacobo Pardo‐Seco, Miriam Cebey-López, Lucía Vilanova‐Trillo, Alberto Gómez‐Carballa, Irene Rivero‐Calle, María Puente-Puig, Carmen Curros-Novo, José Gómez-Rial, Antonio Salas, José María Martinón-Sánchez, Lorenzo Redondo-Collazo, Carmen Rodrı́guez-Tenreiro, Federico Martinón‐Torres
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01590

Seasonal Variation of Bacterial Diversity Along the Marine Particulate Matter Continuum
Cited by: 38
Author(s): Mireia Mestre, Juan Höfer, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 4
Published: about 6 years ago

10.1186/s12888-018-1741-8

Prevalence of depression or depressive symptoms among people living with HIV/AIDS in China: a systematic review and meta-analysis
Cited by: 68
Author(s): Tingting Wang, Hanlin Fu, Atipatsa Chiwanda Kaminga, Zhanzhan Li, Gangqiang Guo, Lizhang Chen, Qiongxuan Li
Software Mentions: 4
Published: about 8 years ago

10.1186/s12936-021-03812-0

Impact of Plasmodium falciparum pfhrp2 and pfhrp3 gene deletions on malaria control worldwide: a systematic review and meta-analysis
Cited by: 15
Author(s): Irene Molina-de la Fuente, Andrea Pastor, Zaida Herrador, Agustín Benito, Pedro Berzosa
Software Mentions: 4
Published: about 5 years ago

10.3390/s21113600

Development and Validation of an ISA100.11a Simulation Model for Accurate Industrial WSN Planning and Deployment
Cited by: 1
Author(s): Zoltan Padrah, Andra Pastrav, Tudor Palade, Ovidiu Ratiu, Emanuel Puşchiţă
Software Mentions: 4
Published: about 5 years ago

10.1186/s12889-021-10993-5

The prevalence of diabetes in Afghanistan: a systematic review and meta-analysis
Cited by: 8
Author(s): Shabbir Akhtar, Jamal Abdul Nasir, Amara Javed, Mariyam Saleem, Sundas Sajjad, Momna Khan, Abdul Wadood, Khwaja Mir Islam Saeed
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0134250

Short-Term Space-Use Patterns of Translocated Mojave Desert Tortoise in Southern California
Cited by: 20
Author(s): Matthew L. Farnsworth, Brett G. Dickson, Luke J. Zachmann, Ericka E. Hegeman, Amanda R. Cangelosi, T. G. Jackson, Amanda F. Scheib
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12862-019-1392-5

Population genomics of rapid evolution in natural populations: polygenic selection in response to power station thermal effluents
Cited by: 59
Author(s): David I. Dayan, Xiao Du, Tara Zeynep Baris, Dominique Wagner, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0244298

Adélie penguins foraging consistency and site fidelity are conditioned by breeding status and environmental conditions
Cited by: 7
Author(s): Candice Michelot, Akira Kato, Thierry Raclot, Yan Ropert‐Coudert
Software Mentions: 4
Published: over 5 years ago

10.3389/fninf.2014.00006

Equation-oriented specification of neural models for simulations
Cited by: 120
Author(s): Marcel Stimberg, Dan F. M. Goodman, Victor Benichoux, Romain Brette
Software Mentions: 4
Published: over 12 years ago

10.3390/s20247289

On the Fidelity of NS-3 Simulations of Wireless Multipath TCP Connections
Cited by: 3
Author(s): Monika Prakash, Atef Abdrabou
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.44454

Correlated evolution between repertoire size and song plasticity predicts that sexual selection on song promotes open-ended learning
Cited by: 26
Author(s): Cristina M. Robinson, Kate T. Snyder, Nicole Creanza
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12859-018-2446-1

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics
Cited by: 26
Author(s): Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes, Scott Hazelhurst, Hocine Bendou, Eugene de Beste, Phelelani T. Mpangase, Oussema Souiai, Mustafa Alghali, Long Yi, Brian D. O’Connor, Michael R. Crusoe, Don Armstrong, Shaun Aron, Fourie Joubert, Azza E. Ahmed, Mamana Mbiyavanga, Peter van Heusden, Lerato E Magosi, Jennie Zermeno, Liudmila Sergeevna Mainzer, Faisal M. Fadlelmola, C V Jongeneel, Nicola Mulder
Software Mentions: 4
Published: over 7 years ago

10.1186/s12889-015-2408-8

Causal inference in multi-state models–sickness absence and work for 1145 participants after work rehabilitation
Cited by: 43
Author(s): Jon Michael Gran, Stein Atle Lie, Irene Øyeflaten, Ørnulf Borgan, Odd O. Aalen
Software Mentions: 4
Published: over 10 years ago

10.1186/s12936-021-03873-1

Efficacy of dihydroartemisinin-piperaquine versus artemether-lumefantrine for the treatment of uncomplicated Plasmodium falciparum malaria among children in Africa: a systematic review and meta-analysis of randomized control trials
Cited by: 6
Author(s): Dawit Assefa, Gizachew Yismaw, Eyasu Makonnen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13023-018-0820-8

Lessons learned from IDeAl — 33 recommendations from the IDeAl-net about design and analysis of small population clinical trials
Cited by: 18
Author(s): Ralf-Dieter Hilgers, Małgorzata Bogdan, Carl‐Fredrik Burman, Holger Dette, Mats O. Karlsson, Franz König, Christoph Male, France Mentré, Geert Molenberghs, Stephen Senn
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0238354

Interventions for increasing colorectal cancer screening uptake among African-American men: A systematic review and meta-analysis
Cited by: 18
Author(s): Charles R. Rogers, Phung Matthews, Xu Liu, Kenneth M. Boucher, Colin Riley, Matthew Huntington, Nathan Le Duc, Kola Okuyemi, Margaret Foster
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0240135

Post-competition recovery strategies in elite male soccer players. Effects on performance: A systematic review and meta-analysis
Cited by: 18
Author(s): Albert Altarriba-Bartés, Javier Peña, Jordi Vicens-Bordas, Raimon Milà-Villaroel, Julio Calleja-González
Software Mentions: 4
Published: almost 6 years ago

10.1093/bioinformatics/bty157

Integrating long-range connectivity information into de Bruijn graphs
Cited by: 56
Author(s): Isaac Turner, Kiran Garimella, Zamin Iqbal, Gil McVean
Software Mentions: 4
Published: over 8 years ago

10.1155/2014/914767

<i>Geodermatophilus poikilotrophi</i>sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Cited by: 32
Author(s): María del Carmen Montero-Calasanz, Benjamin Hofner, Markus Göker, Manfred Rohde, Cathrin Spröer, Karima Hezbri, Maher Gtari, Peter Schümann, Hans‐Peter Klenk
Software Mentions: 4
Published: over 12 years ago

10.1186/s13059-020-02163-4

Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
Cited by: 55
Author(s): Ranjith Papareddy, Katalin Páldi, Subramanian Paulraj, Ping Kao, Stefan Lutzmayer, Michael D. Nodine
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2019.00113

Efficacy of Hepatic Resection vs. Radiofrequency Ablation for Patients With Very-Early-Stage or Early-Stage Hepatocellular Carcinoma: A Population-Based Study With Stratification by Age and Tumor Size
Cited by: 26
Author(s): Yiquan Jiang, Zi‐Xian Wang, Yihui Deng, Yang Yang, Guoying Wang
Software Mentions: 4
Published: over 7 years ago

10.1038/s41438-020-00416-8

Identification of key gene networks controlling organic acid and sugar metabolism during watermelon fruit development by integrating metabolic phenotypes and gene expression profiles
Cited by: 66
Author(s): Muhammad Umer, Luqman Bin Safdar, Haileslassie Gebremeskel, Shengjie Zhao, Pingli Yuan, Huiling Zhu, Mohamed Omar Kaseb, Muhammad Anees, Xingrong Lu, Nan He, Chengsheng Gong, Wenge Liu
Software Mentions: 4
Published: over 5 years ago

10.1097/MD.0000000000025756

Uracil-tegafur vs fluorouracil as postoperative adjuvant chemotherapy in Stage II and III colon cancer
Cited by: 1
Author(s): Po-Huang Chen, Yi‐Ying Wu, Chien-Hsing Lee, Chi‐Hsiang Chung, Yuguang Chen, Tseng Huang, Ren-Hua Yeh, Ping‐Ying Chang, Ming–Shen Dai, Shiue‐Wei Lai, Ching–Liang Ho, Jiahong Chen, Yeu‐Chin Chen, Je-Ming Hu, Sung-Sen Yang, Wu-Chien Chien
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-017-1849-8

MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics
Cited by: 11
Author(s): Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu
Software Mentions: 4
Published: almost 9 years ago

10.1523/ENEURO.0237-16.2016

Circadian Forced Desynchrony of the Master Clock Leads to Phenotypic Manifestation of Depression in Rats
Cited by: 41
Author(s): Miriam Ben-Hamo, Tracy A. Larson, Leanne S. Duge, Carl Sikkema, Charles W. Wilkinson, Horacio O. de la Iglesia, Mónica M. C. González
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0078546

Whole-Genome Pathway Analysis on 132,497 Individuals Identifies Novel Gene-Sets Associated with Body Mass Index
Cited by: 4
Author(s): Matthew A. Simonson, Matthew B. McQueen, Matthew C. Keller
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0225650

Are viral-infections associated with Ménière’s Disease? A systematic review and meta-analysis of molecular-markers of viral-infection in case-controlled observational studies of MD
Cited by: 11
Author(s): Nicholas John Dean, Christopher J. Pastras, Daniel Brown, Aaron J. Camp
Software Mentions: 4
Published: over 6 years ago

10.1186/s12889-020-8414-5

The prevalence of hepatitis C virus infection in β-thalassemia patients in Pakistan: a systematic review and meta-analysis
Cited by: 8
Author(s): Shabbir Akhtar, Jamal Abdul Nasir, Andrew Hinde
Software Mentions: 4
Published: about 6 years ago

10.1007/s00432-019-02982-4

Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers
Cited by: 70
Author(s): Mingjia Li, Daniel Spakowicz, Jarred Burkart, Sandip Pravin Patel, Marium Husain, Kai He, Erin M. Bertino, Peter G. Shields, David P. Carbone, Claire F. Verschraegen, Carolyn J. Presley, Gregory A. Otterson, Kari Kendra, Dwight H. Owen
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0110189

Comparison of Statistical and Clinical Predictions of Functional Outcome after Ischemic Stroke
Cited by: 11
Author(s): Douglas Thompson, Gordon Murray, Cathie Sudlow, Martin Dennis, William Whiteley
Software Mentions: 4
Published: almost 12 years ago

10.1136/jclinpath-2019-206300

Prognostic value of perineural invasion in prostate needle biopsies: a population-based study of patients treated by radical prostatectomy
Cited by: 8
Author(s): Peter Ström, Tobias Nordström, Brett Delahunt, Hema Samaratunga, Henrik Grönberg, Lars Egevad, Martin Eklund
Software Mentions: 4
Published: over 6 years ago

10.1111/1751-7915.13871

Strain diversity of plant‐associated <i>Lactiplantibacillus plantarum</i>
Cited by: 15
Author(s): Alice Yu, Elissa A. Goldman, Jason T. Brooks, Benjamin L. Golomb, Irene S. Yim, Velitchka Gotcheva, Angel Angelov, Eun Bae Kim, Maria L. Marco
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-44445-3

Epidemiologic evaluation of Nhanes for environmental Factors and periodontal disease
Cited by: 8
Author(s): Pinar Emecen‐Huja, H. F. Li, Jeffrey L. Ebersole, Joshua Lambert, Heather Bush
Software Mentions: 4
Published: about 7 years ago

10.1038/srep25398

Influence of DNA extraction methods on relative telomere length measurements and its impact on epidemiological studies
Cited by: 40
Author(s): Julia Raschenberger, Claudia Lamina, Margot Haun, Barbara Kollerits, Stefan Coassin, Eva Boes, Ludmilla Kedenko, Anna Köttgen, Florian Kronenberg
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pgen.1005422

Retrohoming of a Mobile Group II Intron in Human Cells Suggests How Eukaryotes Limit Group II Intron Proliferation
Cited by: 11
Author(s): David M. Truong, F. Curtis Hewitt, Joseph H. Hanson, Xiaoxia Cui, Alan M. Lambowitz
Software Mentions: 4
Published: almost 11 years ago

10.1111/1751-7915.12190

The <scp>R</scp>sm regulon of plant growth‐promoting <scp><i>P</i></scp><i>seudomonas fluorescens</i> <scp>SS</scp>101: role of small <scp>RNA</scp>s in regulation of lipopeptide biosynthesis
Cited by: 17
Author(s): Song Cui, Menno van der Voort, Judith E. van de Mortel, Karl A. Hassan, Liam D. H. Elbourne, Ian T. Paulsen, Joyce E. Loper, Jos M. Raaijmakers
Software Mentions: 4
Published: over 11 years ago

10.3390/ijms22062826

Role of Genetic Variation in Cytochromes P450 in Breast Cancer Prognosis and Therapy Response
Cited by: 4
Author(s): Viktor Hlaváč, Radka Václavíková, Veronika Brynychová, Pavel Ostašov, Renata Koževnikovová, Kateřina Kopečková, David Vrána, Jiří Gatěk, Pavel Souček
Software Mentions: 4
Published: over 5 years ago

10.3389/fnhum.2021.622224

Predicting Student Performance Using Machine Learning in fNIRS Data
Cited by: 10
Author(s): Amanda Yumi Ambriola Oku, João Ricardo Sato
Software Mentions: 4
Published: over 5 years ago

10.1099/mic.0.001051

The impact of intra-specific diversity in the rhizobia-legume symbiosis
Cited by: 5
Author(s): Bryden Fields, Emma K Moffat, Ville‐Petri Friman, Ellie Harrison
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2015.00380

Benchmarking neuromorphic systems with Nengo
Cited by: 0
Author(s): Trevor Bekolay, Terrence C. Stewart, Chris Eliasmith
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0011040

Drug-Eluting versus Bare-Metal Stent for Treatment of Saphenous Vein Grafts: A Meta-Analysis
Cited by: 49
Author(s): Pascal Meier, Emmanouil S. Brilakis, Roberto Corti, Guido Knapp, Mehdi H. Shishehbor, Hitinder S. Gurm
Software Mentions: 4
Published: about 16 years ago

10.1038/s41598-021-81193-9

INSPECTOR: free software for magnetic resonance spectroscopy data inspection, processing, simulation and analysis
Cited by: 21
Author(s): Martin Gajdošík, Karl Landheer, Kelley M. Swanberg, Christoph Juchem
Software Mentions: 4
Published: over 5 years ago

10.3389/fninf.2018.00090

Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data
Cited by: 24
Author(s): Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün, Michael Denker
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0256729

Sociodemographic risk factors of under-five stunting in Bangladesh: Assessing the role of interactions using a machine learning method
Cited by: 4
Author(s): Mohaimen Mansur, Awan Afiaz, Md. Saddam Hossain
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12893-021-01272-6

Indications and outcomes of enterovesical and colovesical fistulas: systematic review of the literature and meta-analysis of prevalence
Cited by: 6
Author(s): Stefano Granieri, Francesco Sessa, Alessandro Bonomi, Sissi Paleino, Federica Bruno, Andrea Chierici, Ivano Sciannamea, Alessandro Germini, Riccardo Campi, Michele Talso, Antonio Facciorusso, G. Deiana, Sergio Serni, Christian Cotsoglou
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-26259-x

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
Cited by: 22
Author(s): Marie‐Alice Fraiture, Assia Saltykova, Stefan Hoffman, Raf Winand, Dieter Deforce, Kevin Vanneste, Sigrid C. J. De Keersmaecker
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0255076

A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction
Cited by: 9
Author(s): Teng Ruei Chen, Sheng Hung Juan, Yu Huang, Lianfang Tian, Wei-Cheng Lo
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0237950

Individual response to antidepressants for depression in adults-a meta-analysis and simulation study
Cited by: 10
Author(s): Klaus Munkholm, Stephanie Winkelbeiner, Philipp Homan
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-52832-z

New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies
Cited by: 14
Author(s): Weihong Qi, Andrea Colarusso, Miriam Olombrada, Ermenegilda Parrilli, Andrea Patrignani, Maria Luisa Tutino, Macarena Toll‐Riera
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0221855

Preferences and perceptions of the recreational spearfishery of the Great Barrier Reef
Cited by: 5
Author(s): Thea E. Bradford, Kennedy Wolfe, Peter J. Mumby
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12915-020-00802-7

A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity
Cited by: 25
Author(s): Timothy Driscoll, Victoria I. Verhoeve, Joseph J. Gillespie, J. Spencer Johnston, Mark L. Guillotte, Kristen E. Rennoll-Bankert, M. Sayeedur Rahman, Darren E. Hagen, Christine G. Elsik, Kevin R. Macaluso, Abdu F. Azad
Software Mentions: 4
Published: about 6 years ago

10.1186/s12889-020-08843-x

Long-term sickness absence in a working population: development and validation of a risk prediction model in a large Dutch prospective cohort
Cited by: 9
Author(s): L. van der Burg, Sander M. J. van Kuijk, Marieke M. ter Wee, Martijn W. Heymans, Angelique E. de Rijk, G. Geuskens, Ramon P G Ottenheijm, Geert Jan Dinant, Annelies Boonen
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0003614

Ecological and Sociodemographic Determinants of House Infestation by Triatoma infestans in Indigenous Communities of the Argentine Chaco
Cited by: 37
Author(s): María Sol Gaspe, Yael Mariana Provecho, Marta Victoria Cardinal, María del Pilar Fernández, Ricardo E. Gürtler
Software Mentions: 4
Published: over 11 years ago

10.1186/s13229-020-00372-z

Placebo response in pharmacological and dietary supplement trials of autism spectrum disorder (ASD): systematic review and meta-regression analysis
Cited by: 32
Author(s): Spyridon Siafis, Oğulcan Çıray, Johannes Schneider‐Thoma, Irene Bighelli, Marc Krause, Alessandro Rodolico, Anna Ceraso, Giacomo Deste, Maximilian Huhn, David Fraguas, Dimitris Mavridis, Tony Charman, Declan Murphy, Mara Parellada, Celso Arango, Stefan Leucht
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.ppat.1009461

Deconvolution of intergenic polymorphisms determining high expression of Factor H binding protein in meningococcus and their association with invasive disease
Cited by: 4
Author(s): Marco Spinsanti, Tarcisio Brignoli, Margherita Bodini, Lucia Eleonora Fontana, Matteo De Chiara, Alessia Biolchi, Alessandro Muzzi, Vincenzo Scarlato, Isabel Delany
Software Mentions: 4
Published: over 5 years ago