10.1186/1471-2164-14-320

Sequencing platform and library preparation choices impact viral metagenomes
Cited by: 88
Author(s): Sergei A. Solonenko, J. Cesar Ignacio‐Espinoza, Adriana Alberti, Corinne Cruaud, Steven J. Hallam, Kostas Konstantinidis, Gene W. Tyson, Patrick Wincker, Matthew B. Sullivan
Software Mentions: 4
Published: about 13 years ago

10.3389/fpsyg.2018.02142

Integrating Differential Evolution Optimization to Cognitive Diagnostic Model Estimation
Cited by: 13
Author(s): Zhehan Jiang, Wenchao Ma
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0211776

Overcoming the problem of multicollinearity in sports performance data: A novel application of partial least squares correlation analysis
Cited by: 28
Author(s): Dan Weaving, Ben Jones, Matt Ireton, Sarah Whitehead, Kevin Till, Clive Beggs
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0223271

Gender linked fate explains lower legal abortion support among white married women
Cited by: 3
Author(s): Leah Ruppanner, Gosia Mikołajczak, Kelsy Kretschmer, Christopher Stout
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0165800

Low CO2 Sensitivity of Microzooplankton Communities in the Gullmar Fjord, Skagerrak: Evidence from a Long-Term Mesocosm Study
Cited by: 16
Author(s): Henriette G. Horn, Nils Sander, Annegret Stuhr, María Algueró-Muñiz, Lennart T. Bach, Martin G. J. Löder, Maarten Boersma, Ulf Riebesell, Nicole Aberle
Software Mentions: 4
Published: over 9 years ago

10.3390/cancers13102389

Mutation Profile of Aggressive Pheochromocytoma and Paraganglioma with Comparison of TCGA Data
Cited by: 5
Author(s): Yun Mi Choi, Jinyeong Lim, Min Ji Jeon, Yu‐Mi Lee, Tae‐Yon Sung, Eun‐Gyoung Hong, Jiyoung Lee, Se Jin Jang, Won Gu Kim, Dong Eun Song, Sung-Min Chun
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.2003583

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species
Cited by: 146
Author(s): Abigail Lind, Jennifer H. Wisecaver, Catarina Lameiras, Philipp Wiemann, Jonathan M. Palmer, Nancy P. Keller, Fernando Rodrigues, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 4
Published: over 8 years ago

10.1534/g3.118.200646

A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat
Cited by: 10
Author(s): Nicholas Santantonio, Jean‐Luc Jannink, Mark E. Sorrells
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2021.685992

The Immune Subtypes and Landscape of Gastric Cancer and to Predict Based on the Whole-Slide Images Using Deep Learning
Cited by: 28
Author(s): Yan Chen, Zhiwei Sun, Wanlan Chen, Changyan Liu, Ruoyang Chai, Jingjing Ding, Wen Liu, Xianzhen Feng, Jun Zhou, Xiaoyi Shen, Shan Huang, Zhongqing Xu
Software Mentions: 4
Published: about 5 years ago

10.1186/s12877-021-02010-6

Risk‐of‐falling related outcomes improved in community‐dwelling older adults after a 6-week sideways walking intervention: a feasibility and pilot study
Cited by: 8
Author(s): Andreas Skiadopoulos, Nick Stergiou
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.567160

Value of 18F-FDG PET/CT-Based Radiomics Nomogram to Predict Survival Outcomes and Guide Personalized Targeted Therapy in Lung Adenocarcinoma With EGFR Mutations
Cited by: 10
Author(s): Bin Yang, Han Ji, Jing Zhong, Lifang Ma, Jian Zhong, Hao Dong, Changsheng Zhou, Shaofeng Duan, Chengzhang Zhu, Jiahe Tian, Longjiang Zhang, Rui Wang, Hong Zhu, Guangming Lu
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.704655

An Immune-Associated Genomic Signature Effectively Predicts Pathologic Complete Response to Neoadjuvant Paclitaxel and Anthracycline-Based Chemotherapy in Breast Cancer
Cited by: 4
Author(s): Changfang Fu, Yu Liu, Xinghua Han, Yueyin Pan, Hongqiang Wang, Hongzhi Wang, Haiming Dai, Wulin Yang
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2164-13-519

Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression
Cited by: 37
Author(s): Sebastian Müller, Clara Baldin, Marco Groth, Reinhard Guthke, Olaf Kniemeyer, Axel A. Brakhage, Vito Valiante
Software Mentions: 4
Published: almost 14 years ago

10.1038/sdata.2015.6

Allometry and growth of eight tree taxa in United Kingdom woodlands
Cited by: 11
Author(s): Matthew R. Evans, Aristides Moustakas, Gregory Carey, Yadvinder Malhi, Nathalie Butt, Sue Benham, D. Pallett, Stefanie Schäfer
Software Mentions: 4
Published: over 11 years ago

10.3389/fpsyt.2021.706474

Adaptive Empathy: Empathic Response Selection as a Dynamic, Feedback-Based Learning Process
Cited by: 4
Author(s): Elena Kozakevich Arbel, Simone G. Shamay‐Tsoory, Uri Hertz
Software Mentions: 4
Published: about 5 years ago

10.3389/fdata.2021.582468

Named Data Networking for Genomics Data Management and Integrated Workflows
Cited by: 3
Author(s): Cameron Ogle, David Reddick, Coleman B. McKnight, Tyler D. Biggs, Rini Pauly, Stephen P. Ficklin, F. Alex Feltus, Susmit Shannigrahi
Software Mentions: 4
Published: over 5 years ago

10.1080/20002297.2020.1742527

The relationship between cigarette smoking and the tongue microbiome in an East Asian population
Cited by: 14
Author(s): Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto, Shigeyuki Nakaji, Koichi Murashita, Yasushi Okuno
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0017476

Functional Structure of Biological Communities Predicts Ecosystem Multifunctionality
Cited by: 341
Author(s): David Mouillot, Sébastien Villéger, Michael Scherer‐Lorenzen, Norman W. H. Mason
Software Mentions: 4
Published: over 15 years ago

10.7554/eLife.27786

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response
Cited by: 29
Author(s): Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0251262

Predictors for inpatient mortality during the first wave of the SARS-CoV-2 pandemic: A retrospective analysis
Cited by: 6
Author(s): Daniel E. Sammartino, Farrukh N Jafri, Brennan Cook, Lisa La, Hye Min Kim, John Cardasis, Joshua P. Raff
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0219652

Drone-based effective counting and ageing of hippopotamus (Hippopotamus amphibius) in the Okavango Delta in Botswana
Cited by: 16
Author(s): Victoria L. Inman, Richard T. Kingsford, Michael J. Chase, Keith E. A. Leggett
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-60025-2

Identification of putative biomarkers for Infantile Hemangiomas and Propranolol treatment via data integration
Cited by: 14
Author(s): Horacio Gómez-Acevedo, Yuemeng Dai, Graham M. Strub, Carrie J. Shawber, June K. Wu, Gresham T. Richter
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2407-10-78

Selective regain of egfr gene copies in CD44+/CD24-/lowbreast cancer cellular model MDA-MB-468
Cited by: 20
Author(s): Konstantin Agelopoulos, Burkhard Greve, Hartmut Schmidt, Heike Pospisil, Stefan Kurtz, Kai Bartkowiak, Antje Andreas, Marek Wieczorek, Eberhard Korsching, Horst Buerger, Burkhard Brandt
Software Mentions: 4
Published: over 16 years ago

10.3390/vaccines8040709

Bacterial Immunogenicity Prediction by Machine Learning Methods
Cited by: 9
Author(s): Иван Димитров, Nevena Zaharieva, Irini Doytchinova
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0088998

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity
Cited by: 58
Author(s): Ron Ophir, Amir Sherman, Mor Rubinstein, Ravit Eshed, Michal Sharabi Schwager, Rotem Harel-Beja, Irit Bar-Ya’akov, Doron Holland
Software Mentions: 4
Published: over 12 years ago

10.18632/aging.102470

Genome-wide association study of hippocampal atrophy rate in non-demented elders
Cited by: 12
Author(s): Yu Guo, Wei Xu, Jieqiong Li, Ya‐Nan Ou, Xue–Ning Shen, Yu‐Yuan Huang, Qiang Dong, Lan Tan, Jin‐Tai Yu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0061623

Boosted Beta Regression
Cited by: 45
Author(s): Matthias Schmid, Florian Wickler, Kelly O. Maloney, Richard M. Mitchell, Nora Fenske, Andreas Mayr
Software Mentions: 4
Published: about 13 years ago

10.7554/eLife.44279

Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield
Cited by: 42
Author(s): Wei Zhang, Jason A. Corwin, Daniel Copeland, Julie E. Feusier, Robert Eshbaugh, David E. Cook, Suzi Atwell, Daniel J. Kliebenstein
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-019-2845-y

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions
Cited by: 29
Author(s): Akanksha Srivastava, Yuliya V. Karpievitch, Steven R. Eichten, Justin O. Borevitz, Ryan Lister
Software Mentions: 4
Published: about 7 years ago

10.3758/s13415-020-00857-7

Effects of trait empathy and expectation on the processing of observed actions
Cited by: 3
Author(s): Christine Albrecht, Christian Bellebaum
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2017.01199

Plasmodium berghei NK65 in Combination with IFN-γ Induces Endothelial Glucocorticoid Resistance via Sustained Activation of p38 and JNK
Cited by: 9
Author(s): Karolina Zielińska, Lode De Cauwer, Sofie Knoops, Kristof Van der Molen, Alexander Sneyers, Jonathan Thommis, J. Brian de Souza, Ghislain Opdenakker, Karolien De Bosscher, Philippe E. Van den Steen
Software Mentions: 4
Published: almost 9 years ago

10.1093/conphys/cow049

The use of α- or β-blockers to ameliorate the chronic stress of captivity in the house sparrow (Passer domesticus)
Cited by: 9
Author(s): Clare Parker Fischer, L. Michael Romero
Software Mentions: 4
Published: over 10 years ago

10.1093/conphys/cou056

Efficacy of a sensory deterrent and pipe modifications in decreasing entrainment of juvenile green sturgeon (Acipenser medirostris) at unscreened water diversions
Cited by: 8
Author(s): Jamilynn B. Poletto, Dennis E. Cocherell, Timothy D. Mussen, Ali Ercan, Hossein Bandeh, M. L. Kavvas, Joseph J. Cech, Nann A. Fangue
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0129350

Multiplexing of ChIP-Seq Samples in an Optimized Experimental Condition Has Minimal Impact on Peak Detection
Cited by: 0
Author(s): Thadeous J. Kacmarczyk, Caitlin Bourque, Xihui Zhang, Yanwen Jiang, Yariv Houvras, Alicia Alonso, Doron Betel
Software Mentions: 4
Published: about 11 years ago

10.3389/fmolb.2019.00044

Integration of Random Forest Classifiers and Deep Convolutional Neural Networks for Classification and Biomolecular Modeling of Cancer Driver Mutations
Cited by: 34
Author(s): Steve Agajanian, Oluyemi Odeyemi, Gennady M. Verkhivker
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-021-04061-3

ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries
Cited by: 2
Author(s): Liangliang Zhang, Yushu Shi, Kim Anh, Christine B. Peterson, Robert R. Jenq
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-020-02002-3

Lifestyle modifications result in alterations in the gut microbiota in obese children
Cited by: 21
Author(s): Ky Young Cho
Software Mentions: 4
Published: over 5 years ago

10.1186/s12986-017-0170-x

High-cholesterol diet does not alter gut microbiota composition in mice
Cited by: 31
Author(s): Lidiya G. Dimova, Nikola Zlatkov, Henkjan J. Verkade, Bernt Eric Uhlin, Uwe J. F. Tietge
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.7209

Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells
Cited by: 20
Author(s): Elena Alexandrova, Giovanni Nassa, Giacomo Corleone, Anton Buzdin, Alexander Aliper, Nadezhda V. Terekhanova, Denis Shepelin, Alex Zhavoronkov, Michael Tamm, Luciano Milanesi, Nicola Miglino, Alessandro Weisz, Pieter Borger
Software Mentions: 4
Published: over 10 years ago

10.3390/microorganisms9061297

Bacterial Communities in Alkaline Saline Soils Amended with Young Maize Plants or Its (Hemi)Cellulose Fraction
Cited by: 1
Author(s): Valentín Pérez-Hernández, Mario Hernández-Guzmán, Marco Luna‐Guido, Yendi E. Navarro‐Noya, Elda M. Romero-Tepal, Luc Dendooven
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0187044

Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
Cited by: 19
Author(s): Kalie F. Beckers, Christopher Schulz, Gary W. Childers
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0231838

Crewmember microbiome may influence microbial composition of ISS habitable surfaces
Cited by: 47
Author(s): Aram Avila-Herrera, James B. Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish K. Mehta, Kasthuri Venkateswaran, Crystal Jaing
Software Mentions: 4
Published: about 6 years ago

10.1111/mec.12840

Niche divergence promotes rapid diversification of East African sky island white-eyes (Aves: Zosteropidae)
Cited by: 46
Author(s): Siobhan C. Cox, Robert Prŷs-Jones, Jan Christian Habel, Bernard Amakobe, Julia J. Day
Software Mentions: 4
Published: about 12 years ago

10.3389/fgene.2020.566734

Pituitary Tumor Transforming Gene 1 Orchestrates Gene Regulatory Variation in Mouse Ventral Midbrain During Aging
Cited by: 4
Author(s): Yujuan Gui, Mélanie Thomas, Pierre Garcia, Mona Karout, Rashi Halder, Alessandro Michelucci, Heike Kollmus, Cuiqi Zhou, Shlomo Melmed, Klaus Schughart, Rudi Balling, Michel Mittelbronn, Joseph H. Nadeau, Robert W. Williams, Thomas Sauter, Manuel Buttini, Lasse Sinkkonen
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00122-018-3186-3

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality
Cited by: 77
Author(s): Bettina Lado, Daniel Vázquez, Martín Quincke, Paula Silva, Ignácio Aguilar, Lucı́a Gutiérrez
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0217464

Characterizing innovators: Ecological and individual predictors of problem-solving performance
Cited by: 18
Author(s): Sanjay Prasher, Julian C. Evans, Megan J. Thompson, Julie Morand‐Ferron
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms20040962

Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.)
Cited by: 29
Author(s): Jianxin Bian, Pingchuan Deng, Haoshuang Zhan, Xiaotong Wu, Mutthanthirige Don Lalith Chandana Nishantha, Zhaogui Yan, Xianghong Du, Xiaojun Nie, Weining Song
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-70026-w

Synergistic drug combinations and machine learning for drug repurposing in chordoma
Cited by: 25
Author(s): Edward E. Anderson, Tammy M. Havener, Kimberley M. Zorn, Daniel H. Foil, Thomas R. Lane, Stephen J. Capuzzi, D. F. C. Morris, Anthony Hickey, David H. Drewry, Sean Ekins
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0173368

Breeding Jatropha curcas by genomic selection: A pilot assessment of the accuracy of predictive models
Cited by: 15
Author(s): Leonardo de Azevedo Peixoto, Bruno Galvêas Laviola, Alexandre Alonso Alves, Tatiana Barbosa Rosado, Leonardo Lopes Bhering
Software Mentions: 4
Published: over 9 years ago

10.3390/cancers13184539

Atomic Force Microscope Nanoindentation Analysis of Diffuse Astrocytic Tumor Elasticity: Relation with Tumor Histopathology
Cited by: 4
Author(s): Abraham Tsitlakidis, Anastasia Tsingotjidou, Aristeidis Κritis, Angeliki Cheva, Panagiotis Selviaridis, Elias C. Aifantis, Nicolas Foroglou
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-16520-0

propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis
Cited by: 130
Author(s): Thomas P. Quinn, Mark F. Richardson, David Lovell, Tamsyn M. Crowley
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2021.705381

Antibody Repertoire Analysis of Tumor-Infiltrating B Cells Reveals Distinct Signatures and Distributions Across Tissues
Cited by: 7
Author(s): Ligal Aizik, Yael Dror, David Taussig, Adi Barzel, Yaron Carmi, Yariv Wine
Software Mentions: 4
Published: about 5 years ago

10.15252/msb.20177573

Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in <i>Escherichia coli</i>
Cited by: 61
Author(s): Manuel Campos, Sander K. Govers, Irnov Irnov, Genevieve S Dobihal, François Cornet, Christine Jacobs‐Wagner
Software Mentions: 4
Published: about 8 years ago

10.3390/nu12113422

PROVIT: Supplementary Probiotic Treatment and Vitamin B7 in Depression—A Randomized Controlled Trial
Cited by: 59
Author(s): Eva Reininghaus, Martina Platzer, Alexandra Kohlhammer-Dohr, Carlo Hamm, Sabrina Mörkl, Susanne Bengesser, Frederike T. Fellendorf, Theressa Lahousen-Luxenberger, Birgitta Leitner-Afschar, Helmut Schöggl, Daniela Amberger-Otti, Walter Wurm, Robert Queissner, Armin Birner, Valerie S Falzberger, Annamaria Painold, Werner Fitz, Jolana Wagner-Skacel, Martina Brunnmayr, Alexandra Rieger, Alexander Maget, Renate Unterweger, Karin Schwalsberger, Bernd Reininghaus, Melanie Lenger, Thomaz F.S. Bastiaanssen, Nina Dalkner
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pbio.3001248

Identification of sequence changes in myosin II that adjust muscle contraction velocity
Cited by: 7
Author(s): Chloe A Johnson, Jake E McGreig, Sarah T. Jeanfavre, Jonathan Walklate, Carlos Vera, Marta Farré, Daniel P. Mulvihill, Anthony J. Baines, Martin S. Ridout, Leslie A. Leinwand, Mark N. Wass, Michael A. Geeves
Software Mentions: 4
Published: about 5 years ago

10.1093/conphys/coab052

Effects of human disturbance on postnatal growth and baseline corticosterone in a long-lived bird
Cited by: 2
Author(s): Hannah Watson, Pat Monaghan, Britt J. Heidinger, Mark Bolton
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01142

The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards
Cited by: 103
Author(s): Carmen Berlanas, Mónica Berbegal, Elena González-Peñas, Meriem Laidani, José Félix Cibriain, Ana Sagües, David Gramaje
Software Mentions: 4
Published: about 7 years ago

10.1186/s12951-021-00916-2

Silicon dioxide nanoparticles induced neurobehavioral impairments by disrupting microbiota–gut–brain axis
Cited by: 23
Author(s): Jun Diao, Yinyin Xia, Xuejun Jiang, Jingfu Qiu, Shuqun Cheng, Junhao Su, Xinhao Duan, Min Gao, Xia Qin, Jun Zhang, Jie Fan, Zhen Zou, Chengzhi Chen
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1007510

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data
Cited by: 39
Author(s): Kai Kang, Qian Meng, Igor Shats, David M. Umbach, Melissa Li, Yuanyuan Li, Xiaoling Li, Leping Li
Software Mentions: 4
Published: over 6 years ago

10.1002/gch2.202000044

Preparation and Evaluation of Rice Bran‐Modified Urea Formaldehyde as Environmental Friendly Wood Adhesive
Cited by: 5
Author(s): Nazrul Islam, Omar Faruk, Nasim Rana, Atanu Kumar Das, Ahsan Habib
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-71301-6

Impact of hyperuricemia on mortality related to aortic diseases: a 3.8-year nationwide community-based cohort study
Cited by: 12
Author(s): Yoichiro Otaki, Tetsu Watanabe, Tsuneo Konta, Masafumi Watanabe, Koichi Asahi, Kunihiro Yamagata, Shouichi Fujimoto, Kazuhiko Tsuruya, Ichiei Narita, Masato Kasahara, Yugo Shibagaki, Kunitoshi Iseki, Toshiki Moriyama, Masahide Kondo, Tsuyoshi Watanabe
Software Mentions: 4
Published: almost 6 years ago

10.3390/metabo10040143

Metabolomics Benefits from Orbitrap GC–MS—Comparison of Low- and High-Resolution GC–MS
Cited by: 29
Author(s): Daniel Stettin, Remington X. Poulin, Georg Pohnert
Software Mentions: 4
Published: over 6 years ago

10.3390/insects11020127

Oviposition Preference of the Cabbage Root Fly towards Some Chinese Cabbage Cultivars: A Search for Future Trap Crop Candidates
Cited by: 7
Author(s): Fabrice Lamy, Laura Bellec, Amélie Rusu-Stievenard, Pauline Clin, Claire Ricono, Diane Olivier, Solène Mauger, Denis Poinsot, Vincent Faloya, Loïc Daniel, Anne Marie Cortesero
Software Mentions: 4
Published: over 6 years ago

10.3390/insects11080492

Descriptive Analysis of the Varroa Non-Reproduction Trait in Honey Bee Colonies and Association with Other Traits Related to Varroa Resistance
Cited by: 12
Author(s): Sonia Eynard, Christina Sann, Benjamin Basso, Anne-Laure Guirao, Yves Le Conte, Bertrand Servin, Léa Tison, Alain Vignal, Fanny Mondet
Software Mentions: 4
Published: almost 6 years ago

10.3390/insects11110748

Effects of Lethal Bronzing Disease, Palm Height, and Temperature on Abundance and Monitoring of Haplaxius crudus
Cited by: 6
Author(s): De‐Fen Mou, Chih-Chung Lee, Philip G. Hahn, Noemi Soto, Alessandra R. Humphries, Brian W. Bahder, Brian W. Bahder
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-25578-3

Distinguishing mirtrons from canonical miRNAs with data exploration and machine learning methods
Cited by: 32
Author(s): Grzegorz Rorbach, Olgierd Unold, Bogumił M. Konopka
Software Mentions: 4
Published: about 8 years ago

10.1186/s40709-020-00118-1

Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach
Cited by: 11
Author(s): Umair Ilyas, Shahiq uz Zaman, Reem Altaf, Humaira Nadeem, Syed Aun Muhammad
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0178603

Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus
Cited by: 17
Author(s): Yangyong Lv
Software Mentions: 4
Published: about 9 years ago

10.1126/sciadv.aay1048

Variable effects of local management on coral defenses against a thermally regulated bleaching pathogen
Cited by: 14
Author(s): Deanna S. Beatty, Jinu Mathew Valayil, Cody S. Clements, Kim B. Ritchie, Frank J. Stewart, Mark E. Hay
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-020-02119-8

Methods for copy number aberration detection from single-cell DNA-sequencing data
Cited by: 63
Author(s): Xian Mallory, Mohammadamin Edrisi, Nicholas E. Navin, Luay Nakhleh
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-019-6294-9

Refining modules to determine functionally significant clusters in molecular networks
Cited by: 2
Author(s): Rama Kaalia, Jagath C. Rajapakse
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00268-20

Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure
Cited by: 49
Author(s): Erick V. S. Motta, Nancy A. Moran
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13059-018-1437-x

Vex-seq: high-throughput identification of the impact of genetic variation on pre-mRNA splicing efficiency
Cited by: 63
Author(s): Scott I. Adamson, Lijun Zhan, Brenton R. Graveley
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pgen.1006297

Drosophila Adaptation to Viral Infection through Defensive Symbiont Evolution
Cited by: 24
Author(s): Vítor G. Faria, Nelson Martins, Sara Magalhães, Tânia F. Paulo, Viola Nolte, Christian Schlötterer, Élio Sucena, Luı́s Teixeira
Software Mentions: 4
Published: almost 10 years ago

10.3389/fgene.2013.00237

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
Cited by: 238
Author(s): Sujai Kumar, Martin O. Jones, Georgios Koutsovoulos, Michael J. Clarke, Mark Blaxter
Software Mentions: 4
Published: over 13 years ago

10.1111/pcmr.12568

An ongoing role for <i>Wnt</i> signaling in differentiating melanocytes in vivo
Cited by: 28
Author(s): Laura Vibert, Gerardo Aquino, Ines Gehring, Tatiana Subkankulova, Thomas F. Schilling, Andrea Rocco, Robert N. Kelsh
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-019-2656-1

Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information
Cited by: 13
Author(s): Zaixiang Tang, Shu‐Feng Lei, Xinyan Zhang, Zixuan Yi, Boyi Guo, Jake Y. Chen, Yueping Shen, Nengjun Yi
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-10-373

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers
Cited by: 170
Author(s): Xinxia Peng, Li Yu, Kathie–Anne Walters, Elizabeth Rosenzweig, Sharon Lederer, Lauri Aicher, Sean Proll, Michael G. Katze
Software Mentions: 4
Published: almost 17 years ago

10.3390/insects12050441

Diel Rhythmicity of Field Responses to Synthetic Pheromone Lures in the Pine Sawyer Monochamus saltuarius
Cited by: 2
Author(s): Junheon Kim, Young Hak Jung, Sang-Myeong Lee
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0183679

Multidimensional pooled shRNA screens in human THP-1 cells identify candidate modulators of macrophage polarization
Cited by: 31
Author(s): Ewa Surdziel, Ieuan Clay, Florian Nigsch, Anke Thiemeyer, Cyril Allard, Gregory R. Hoffman, John S. Reece‐Hoyes, Tanushree Phadke, Romain Gambert, Caroline Gubser Keller, Marie-Gabrielle Ludwig, Birgit Baumgarten, Mathias Frederiksen, Dirk Schübeler, Klaus Seuwen, Tewis Bouwmeester, Barna D. Fodor
Software Mentions: 4
Published: almost 9 years ago

10.3389/fnins.2017.00112

Antidyskinetic Effects of MEK Inhibitor Are Associated with Multiple Neurochemical Alterations in the Striatum of Hemiparkinsonian Rats
Cited by: 21
Author(s): Guiqin Chen, Shuke Nie, Chao Han, Kai Ma, Xu Yan, Zhentao Zhang, Stella M. Papa, Xin Cao
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7466

Turning to the dark side: LED light at night alters the activity and species composition of a foraging bat assemblage in the northeastern United States
Cited by: 5
Author(s): Chad L. Seewagen, Amanda M. Adams
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0122339

The Active Tamoxifen Metabolite Endoxifen (4OHNDtam) Strongly Down-Regulates Cytokeratin 6 (CK6) in MCF-7 Breast Cancer Cells
Cited by: 4
Author(s): Thomas Helland, Jennifer Gjerde, Simon N. Dankel, Ingvild S. Fenne, Linn Skartveit, Andreas Drangevåg, Olivera Bozickovic, Marianne Hauglid Flågeng, Håvard Søiland, Gunnar Mellgren, Ernst A. Lien
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0241964

Motivations and fears driving participation in collaborative research infrastructure for animal tracking
Cited by: 2
Author(s): Tara L. Crewe, Dave Kendal, Hamish A. Campbell
Software Mentions: 4
Published: over 5 years ago

10.1186/s12966-020-00992-x

Diurnal patterns of sedentary behavior and changes in physical function over time among older women: a prospective cohort study
Cited by: 8
Author(s): Chase Reuter, John Bellettiere, Sandy Liles, Chongzhi Di, Dorothy D. Sears, Michael J. LaMonte, Marcia L. Stefanick, Andrea Z. LaCroix, Loki Natarajan
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-018-4800-0

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits
Cited by: 20
Author(s): Min Wang, Tim Hancock, Amanda J. Chamberlain, Christy J. Vander Jagt, J.E. Pryce, Benjamin G. Cocks, Michael E. Goddard, Ben J. Hayes
Software Mentions: 4
Published: about 8 years ago

10.3390/cancers11050698

NECTIN4 (PVRL4) as Putative Therapeutic Target for a Specific Subtype of High Grade Serous Ovarian Cancer—An Integrative Multi-Omics Approach
Cited by: 25
Author(s): Christine Bekos, Besnik Muqaku, Sabine Dekan, Reinhard Horvat, Stephan Polterauer, Christopher Gerner, Stefanie Aust, Dietmar Pils
Software Mentions: 4
Published: about 7 years ago

10.1038/s41398-020-00898-z

Multi-domain potential biomarkers for post-traumatic stress disorder (PTSD) severity in recent trauma survivors
Cited by: 29
Author(s): Ziv Ben‐Zion, Yoav Zeevi, Nimrod Jackob Keynan, Roee Admon, Tal Kozlovski, Haggai Sharon, Pinchas Halpern, Israel Liberzon, Arieh Y. Shalev, Yoav Benjamini, Talma Hendler
Software Mentions: 4
Published: about 6 years ago

10.7150/thno.49451

An immune cell infiltration-based immune score model predicts prognosis and chemotherapy effects in breast cancer
Cited by: 75
Author(s): Silei Sui, Xin An, Caiming Xu, Zongjuan Li, Yi-Jun Hua, Geya Huang, Sibei Sui, Long Qian, Yanxia Sui, Yuqing Xiong, Michael Ntim, Wei Guo, Miao Chen, Wu Deng, Xia Xiao, Man Li
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-017-3745-z

The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model
Cited by: 20
Author(s): Martijn van Hagen, Diewertje G. E. Piebes, Wim C. de Leeuw, Ilona M. Vuist, Willeke M. C. van Roon‐Mom, Perry D. Moerland, Pernette J. Verschure
Software Mentions: 4
Published: about 9 years ago

10.3390/genes10100745

Differential Gene Expression in Articular Cartilage and Subchondral Bone of Neonatal and Adult Horses
Cited by: 4
Author(s): Ann M. Kemper, Jenny Drnevich, Molly E. McCue, Annette M. McCoy
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12870-016-0933-y

Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico
Cited by: 39
Author(s): Andréa Garavito, Christophe Montagnon, Romain Guyot, Benoît Bertrand
Software Mentions: 4
Published: over 9 years ago

10.1186/s13024-021-00450-7

Genome-wide histone acetylation analysis reveals altered transcriptional regulation in the Parkinson’s disease brain
Cited by: 37
Author(s): Lilah Toker, Gia Tuong Thi Tran, Janani Sundaresan, Ole‐Bjørn Tysnes, Guido Alves, Kristoffer Haugarvoll, Gonzalo S. Nido, Christian Dölle, Charalampos Tzoulis
Software Mentions: 4
Published: about 5 years ago

10.1126/sciadv.abf8660

FUS-ALS mutants alter FMRP phase separation equilibrium and impair protein translation
Cited by: 32
Author(s): Nicol Birsa, Agnieszka M Ule, Maria Giovanna Garone, Brian Tsang, Francesca Mattedi, P. Andrew Chong, Jack Humphrey, Seth Jarvis, Melis Pisiren, Oscar G. Wilkins, Micheal L Nosella, Anny Devoy, Cristian Bodo, Rafaela Fernandez de la Fuente, Elizabeth Fisher, Alessandro Rosa, Gabriella Viero, Julie D. Forman-Kay, Giampietro Schiavo, Pietro Fratta
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms20092177

Polysome Profiling of a Human Glioblastoma Reveals Intratumoral Heterogeneity
Cited by: 9
Author(s): Fernanda C. S. Lupinacci, Hellen Kuasne, Martín Roffé, Julia Avian Vassalakis, Fernanda Ferreira da Silva, Tiago G. Santos, Victor Piana de Andrade, Paulo Sanematsu, Vilma R. Martins, Sílvia Regina Rogatto, Glaucia Noeli Maroso Hajj
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pcbi.1009250

IUSMMT: Survival mediation analysis of gene expression with multiple DNA methylation exposures and its application to cancers of TCGA
Cited by: 7
Author(s): Zhonghe Shao, Ting Wang, Meng Zhang, Zhou Jiang, Shuiping Huang, Ping Zeng
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-020-02249-z

N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer’s disease
Cited by: 112
Author(s): Andrew M Shafik, Feiran Zhang, Zhiqin Guo, Qing Dai, Kinga Pajdzik, Yangping Li, Yunhee Kang, Bing Yao, Hao Wu, Chuan He, Emily G. Allen, Ranhui Duan, Peng Jin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-03871-x

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida
Cited by: 21
Author(s): Marc‐Olivier Duceppe, Joël Lafond-Lapalme, Juan E. Palomares-Rius, Michaël Sabeh, Vivian C. Blok, Peter Moffett, Benjamin Mimee
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0051013

A Measure of the Signal-to-Noise Ratio of Microarray Samples and Studies Using Gene Correlations
Cited by: 15
Author(s): David Venet, Vincent Detours, Hugues Bersini
Software Mentions: 4
Published: over 13 years ago