Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.1029

https://doi.org/10.7717/peerj.1029

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

Cited by: 584
Author(s): Francesco Asnicar, George Weingart, Timothy L. Tickle, Curtis Huttenhower, Nicola Segata
Published: over 9 years ago

Software Mentions 6

cran: HMP
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
Papers that mentioned: 25
pypi: export2graphlan
export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn
Papers that mentioned: 4
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144