Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.62320

https://doi.org/10.7554/eLife.62320

Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response

Cited by: 9
Author(s): Timurs Maculins, Erik Verschueren, Trent Hinkle, Meena Choi, Patrick Chang, Cécile Chalouni, Shilpa Rao, Youngsu Kwon, Junghyun Lim, Anand Kumar Katakam, Ryan C. Kunz, Brian K. Erickson, Ting Huang, Tsung-Heng Tsai, Olga Vitek, Mike Reichelt, Yasin Şenbabaoğlu, Brent McKenzie, John R. Rohde, Ivan Đikić, Donald S. Kirkpatrick, Aditya Murthy
Published: over 3 years ago

Software Mentions 4

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: HTSeqGenie
A NGS analysis pipeline.
Papers that mentioned: 12
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Papers that mentioned: 5