Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/nu13082833

https://doi.org/10.3390/nu13082833

Targeted High-Resolution Taxonomic Identification of Bifidobacterium longum subsp. infantis Using Human Milk Oligosaccharide Metabolizing Genes

Cited by: 8
Author(s): Lauren Tso, Kevin S. Bonham, Alyssa Fishbein, Sophie Rowland, Vanja Klepac‐Ceraj
Published: over 3 years ago

Software Mentions 6

cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: primer
Functions and Data for the Book, a Primer of Ecology with R
Papers that mentioned: 237
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: primer
A primer for prime numbers
Papers that mentioned: 237
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120