An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.3390/ijms22062822

https://doi.org/10.3390/ijms22062822

A Detailed Catalogue of Multi-Omics Methodologies for Identification of Putative Biomarkers and Causal Molecular Networks in Translational Cancer Research

Cited by: 6
Author(s): Efstathios Iason Vlachavas, Jonas Bohn, Frank Ückert, Sylvia Nürnberg
Published: over 4 years ago

Software Mentions 16

bioconductor: cBioPortalData
Exposes and makes available data from the cBioPortal web resources
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: GenomicDataCommons
NIH / NCI Genomic Data Commons Access
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: M3C
Monte Carlo Reference-based Consensus Clustering
Papers that mentioned: 7
Very Likely Science (90)
bioconductor: MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor
Papers that mentioned: 16
Very Likely Science (85)
bioconductor: netDx
Network-based patient classifier
Papers that mentioned: 4
Very Likely Science (100)
bioconductor: ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
Papers that mentioned: 4
Very Likely Science (100)
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
Very Likely Science (100)
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
Very Likely Science (100)
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
Very Likely Science (100)
cran: ActivePathways
Integrative Pathway Enrichment Analysis of Multivariate Omics Data
Papers that mentioned: 3
Very Likely Science (100)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: SIMMS
Subnetwork Integration for Multi-Modal Signatures
Papers that mentioned: 1
Very Likely Science (93)
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
Papers that mentioned: 827
Very Likely Science (75)
pypi: SpatialDE
Spatial and Temporal DE test
Papers that mentioned: 14
Very Likely Science (100)
pypi: xenaPython
XENA python API
Papers that mentioned: 3
Very Likely Science (75)