Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1006883

https://doi.org/10.1371/journal.pgen.1006883

Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses

Cited by: 108
Author(s): Jumpei Ito, Ryota Sugimoto, Hirofumi Nakaoka, Shiro Yamada, Tetsuaki Kimura, Takahide Hayano, Ituro Inoue
Published: over 7 years ago

Software Mentions 8

cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: ReorderCluster
Reordering the Dendrogram According to the Class Labels
Papers that mentioned: 1
cran: wordcloud
Word Clouds
Papers that mentioned: 39
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
pypi: dump
Wrapper around psql and pg_dump to make it easier to backup/restore a PostgreSQL database
Papers that mentioned: 6
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: wordcloud
A little word cloud generator
Papers that mentioned: 39