Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008625

https://doi.org/10.1371/journal.pcbi.1008625

Cited by: 27
Author(s): Stephanie C. Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
Published: over 3 years ago

Software Mentions 15

bioconductor: beachmat
Compiling Bioconductor to Handle Each Matrix Type
Papers that mentioned: 3
bioconductor: BiocSingular
Singular Value Decomposition for Bioconductor Packages
Papers that mentioned: 2
bioconductor: DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Papers that mentioned: 6
bioconductor: DelayedMatrixStats
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Papers that mentioned: 1
bioconductor: HDF5Array
HDF5 backend for DelayedArray objects
Papers that mentioned: 3
bioconductor: mbkmeans
Mini-batch K-means Clustering for Single-Cell RNA-seq
Papers that mentioned: 2
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: ClusterR
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering
Papers that mentioned: 2
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: scanpy
Single-Cell Analysis in Python.
Papers that mentioned: 68
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431