Data

Tools

Indexes

Applications

Experiments

Papers

Papers: 10.1371/journal.pcbi.1003326

https://doi.org/10.1371/journal.pcbi.1003326

Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

Cited by: 228
Author(s): Timonthy Bailey, Paweł Krajewski, István Ladunga, Céline Lefèbvre, Qunhua Li, Tao Liu, Pedro Madrigal, Cenny Taslim, Jie Zhang
Published: almost 13 years ago

Software Mentions 4

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
Very Likely Science (76)
cran: DIME
Differential Identification using Mixture Ensemble
Papers that mentioned: 19
Very Likely Science (93)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets
Papers that mentioned: 42
Very Likely Science (80)